Wall clock time and date at job start Tue Mar 31 2020 11:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.44793 * 112.18185 * 2 1 4 4 C 1.53335 * 111.17009 * 52.10325 * 3 2 1 5 5 C 1.54507 * 108.19023 * 294.65207 * 3 2 1 6 6 C 1.52662 * 113.00363 * 175.72615 * 3 2 1 7 7 C 1.52843 * 110.40062 * 310.80946 * 6 3 2 8 8 N 1.46830 * 109.23014 * 179.05110 * 7 6 3 9 9 C 1.38229 * 120.00322 * 151.61897 * 8 7 6 10 10 C 1.38995 * 119.99639 * 5.23159 * 9 8 7 11 11 H 1.08001 * 119.99926 * 45.97150 * 10 9 8 12 12 C 1.40816 * 119.99703 * 225.97361 * 10 9 8 13 13 N 1.30342 * 120.00369 * 8.20119 * 12 10 9 14 14 Si 1.86803 * 120.00036 * 188.19503 * 12 10 9 15 15 H 1.48505 * 109.46831 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46863 * 119.99984 * 14 12 10 17 17 H 1.48501 * 109.47455 * 240.00311 * 14 12 10 18 18 C 1.41144 * 120.00493 * 185.22554 * 9 8 7 19 19 C 1.43207 * 120.00293 * 186.18260 * 18 9 8 20 20 N 8.70292 * 146.67985 * 92.36310 * 2 1 3 21 21 C 1.43203 * 120.00069 * 6.19175 * 18 9 8 22 22 N 7.51384 * 169.30864 * 24.51744 * 2 1 3 23 23 C 1.52851 * 108.53544 * 60.05415 * 7 6 3 24 24 C 1.44797 * 112.17769 * 138.96200 * 2 1 3 25 25 C 1.54485 * 108.20691 * 65.24837 * 24 2 1 26 26 C 1.53330 * 111.18039 * 307.76259 * 24 2 1 27 27 H 1.09002 * 109.47150 * 59.99346 * 1 2 3 28 28 H 1.09000 * 109.46868 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46645 * 300.00038 * 1 2 3 30 30 H 1.08997 * 109.47046 * 301.95194 * 4 3 2 31 31 H 1.08995 * 109.47202 * 181.94510 * 4 3 2 32 32 H 1.08998 * 109.46925 * 61.94650 * 4 3 2 33 33 H 1.08997 * 109.46928 * 179.97438 * 5 3 2 34 34 H 1.09003 * 109.46643 * 299.97383 * 5 3 2 35 35 H 1.09001 * 109.46851 * 59.97132 * 5 3 2 36 36 H 1.09233 * 109.44373 * 71.25884 * 6 3 2 37 37 H 1.09240 * 109.43441 * 190.38657 * 6 3 2 38 38 H 1.08692 * 110.43689 * 298.84551 * 7 6 3 39 39 H 0.97008 * 120.00447 * 331.61961 * 8 7 6 40 40 H 0.96993 * 120.00157 * 184.98718 * 13 12 10 41 41 H 1.09226 * 109.38531 * 60.29020 * 23 7 6 42 42 H 1.09234 * 109.37824 * 179.38549 * 23 7 6 43 43 H 1.08996 * 109.47692 * 182.29859 * 25 24 2 44 44 H 1.09006 * 109.47065 * 302.30014 * 25 24 2 45 45 H 1.09004 * 109.47227 * 62.29373 * 25 24 2 46 46 H 1.08995 * 109.47716 * 298.89998 * 26 24 2 47 47 H 1.09000 * 109.47051 * 58.90388 * 26 24 2 48 48 H 1.09004 * 109.46882 * 178.89641 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0157 1.3408 0.0000 4 6 1.4115 2.1851 1.1283 5 6 1.6308 2.0186 -1.3341 6 6 3.5385 1.3641 0.1047 7 6 4.0077 0.4670 1.2498 8 7 5.4744 0.4906 1.3129 9 6 6.1178 0.2842 2.5188 10 6 5.3833 -0.0531 3.6495 11 1 4.6202 -0.8151 3.5903 12 6 5.6340 0.5988 4.8722 13 7 6.4374 1.6245 4.9113 14 14 4.8150 -0.0061 6.4384 15 1 3.9562 -1.1771 6.1274 16 1 5.8562 -0.4032 7.4198 17 1 3.9818 1.0806 7.0130 18 6 7.5207 0.4158 2.6019 19 6 8.2014 0.0741 3.8146 20 7 8.7413 -0.1971 4.7766 21 6 8.2633 0.8912 1.4736 22 7 8.8524 1.2683 0.5785 23 6 3.5388 -0.9609 0.9717 24 6 2.0156 -1.0114 0.8803 25 6 1.6288 -2.3984 0.3209 26 6 1.4140 -0.9055 2.2867 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 0.3280 2.2209 1.0151 31 1 1.8154 3.1964 1.0816 32 1 1.6616 1.7381 2.0905 33 1 2.0325 3.0316 -1.3560 34 1 2.0435 1.4460 -2.1647 35 1 0.5451 2.0561 -1.4225 36 1 3.9730 1.0115 -0.8334 37 1 3.8748 2.3877 0.2854 38 1 3.6080 0.8203 2.1969 39 1 5.9921 0.6511 0.5083 40 1 6.6669 2.0286 5.7626 41 1 3.9711 -1.3077 0.0305 42 1 3.8765 -1.6167 1.7774 43 1 1.9958 -3.1758 0.9910 44 1 0.5439 -2.4689 0.2422 45 1 2.0738 -2.5293 -0.6656 46 1 1.6534 0.0691 2.7120 47 1 0.3316 -1.0205 2.2284 48 1 1.8291 -1.6900 2.9195 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171623135.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:30 Heat of formation + Delta-G solvation = 43.093492 kcal Electronic energy + Delta-G solvation = -28113.261866 eV Core-core repulsion = 24588.222233 eV Total energy + Delta-G solvation = -3525.039633 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.37959 -38.92365 -36.84165 -36.53819 -36.00894 -35.24237 -33.50245 -30.96284 -29.28849 -28.65608 -28.45957 -27.44298 -27.12136 -26.56073 -23.14124 -22.18716 -21.49162 -20.12057 -18.92476 -18.61944 -17.50383 -17.03485 -16.70982 -16.47888 -15.96912 -15.27478 -15.05856 -14.82056 -14.69674 -14.56717 -14.18285 -14.12974 -13.88054 -13.68150 -13.59336 -13.52896 -13.50813 -13.32011 -13.14235 -13.04428 -12.88150 -12.68827 -12.61828 -12.56471 -12.38141 -12.32155 -12.29182 -12.12547 -12.05711 -11.81885 -11.76342 -11.45868 -11.33660 -11.13004 -11.06075 -10.49369 -8.80733 -8.71435 -8.15017 -6.87595 1.01322 1.41221 1.50394 1.56385 2.14666 2.16253 2.38485 2.45498 2.86008 2.90671 2.98628 3.62734 3.81760 3.93335 3.98300 4.03895 4.07390 4.17061 4.41653 4.46252 4.57855 4.58397 4.62869 4.80458 4.82422 4.83291 4.89417 4.90833 4.95055 5.00281 5.03097 5.04047 5.09044 5.13351 5.15006 5.22326 5.25176 5.31770 5.35032 5.41191 5.46513 5.54917 5.56870 5.64944 5.78414 6.23088 6.50908 6.59309 6.77051 6.87665 7.08684 7.26668 7.62179 8.17254 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.013085 B = 0.005162 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.390879 B = 5422.947477 C = 6424.610478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.575 5.575 3 C 0.151 3.849 4 C -0.180 4.180 5 C -0.136 4.136 6 C -0.114 4.114 7 C 0.159 3.841 8 N -0.722 5.722 9 C 0.456 3.544 10 C -0.487 4.487 11 H 0.112 0.888 12 C 0.066 3.934 13 N -0.782 5.782 14 Si 0.954 3.046 15 H -0.237 1.237 16 H -0.287 1.287 17 H -0.260 1.260 18 C -0.309 4.309 19 C 0.362 3.638 20 N -0.576 5.576 21 C 0.310 3.690 22 N -0.559 5.559 23 C -0.117 4.117 24 C 0.148 3.852 25 C -0.137 4.137 26 C -0.179 4.179 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.028 0.972 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.386 0.614 40 H 0.290 0.710 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.058 0.942 44 H 0.067 0.933 45 H 0.055 0.945 46 H 0.048 0.952 47 H 0.066 0.934 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.728 -2.505 -7.793 22.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.300 5.300 3 C 0.061 3.939 4 C -0.239 4.239 5 C -0.194 4.194 6 C -0.153 4.153 7 C 0.055 3.945 8 N -0.344 5.344 9 C 0.338 3.662 10 C -0.520 4.520 11 H 0.129 0.871 12 C -0.158 4.158 13 N -0.405 5.405 14 Si 0.775 3.225 15 H -0.159 1.159 16 H -0.213 1.213 17 H -0.185 1.185 18 C -0.330 4.330 19 C 0.055 3.945 20 N -0.260 5.260 21 C 0.005 3.995 22 N -0.243 5.243 23 C -0.157 4.157 24 C 0.058 3.942 25 C -0.195 4.195 26 C -0.238 4.238 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.047 0.953 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.219 0.781 40 H 0.102 0.898 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.085 0.915 45 H 0.074 0.926 46 H 0.067 0.933 47 H 0.085 0.915 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.023 -2.247 -7.960 20.744 hybrid contribution 0.070 0.383 1.426 1.478 sum -18.954 -1.864 -6.534 20.135 Atomic orbital electron populations 1.22286 0.85120 1.02464 1.00746 1.56544 1.07227 1.08206 1.57990 1.20279 0.91874 0.86308 0.95436 1.22684 1.01762 1.00423 0.99072 1.22251 1.01899 0.99575 0.95658 1.21882 0.95454 0.99787 0.98166 1.20855 0.78803 0.95500 0.99359 1.45440 1.06406 1.74139 1.08420 1.17085 0.87022 0.77980 0.84162 1.19303 1.19964 1.20624 0.92138 0.87073 1.26508 0.94012 0.92602 1.02718 1.69554 1.25704 1.15455 1.29776 0.85525 0.78908 0.80480 0.77543 1.15894 1.21296 1.18479 1.12810 0.89219 1.43550 0.87428 1.24588 0.89985 0.88897 0.91047 1.80892 1.12393 1.20035 1.12672 1.25522 0.92030 0.89902 0.92031 1.81040 1.08970 1.20492 1.13819 1.22068 0.94667 0.96900 1.02026 1.20342 0.92470 0.91563 0.89827 1.22279 1.01803 0.94484 1.00885 1.22690 1.01426 1.01946 0.97726 0.90909 0.90651 0.95313 0.91232 0.92330 0.93419 0.92255 0.92459 0.91526 0.91217 0.91512 0.90057 0.78054 0.89850 0.91826 0.91546 0.92306 0.91461 0.92632 0.93330 0.91523 0.92347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 7.54 127.69 0.96 1.56 16 2 N -0.58 -10.81 3.54 -827.13 -2.93 -13.74 16 3 C 0.15 3.00 0.69 4.44 0.00 3.00 16 4 C -0.18 -3.59 7.58 72.09 0.55 -3.04 16 5 C -0.14 -2.28 8.11 72.49 0.59 -1.69 16 6 C -0.11 -2.78 4.15 30.43 0.13 -2.65 16 7 C 0.16 4.53 2.12 44.83 0.09 4.63 16 8 N -0.72 -25.11 5.07 -318.33 -1.62 -26.72 16 9 C 0.46 19.16 6.21 39.03 0.24 19.40 16 10 C -0.49 -20.31 6.95 23.08 0.16 -20.15 16 11 H 0.11 4.24 6.68 -2.91 -0.02 4.22 16 12 C 0.07 2.86 4.46 85.54 0.38 3.25 16 13 N -0.78 -37.36 10.71 21.97 0.24 -37.12 16 14 Si 0.95 34.89 29.58 68.60 2.03 36.92 16 15 H -0.24 -7.85 7.11 99.48 0.71 -7.14 16 16 H -0.29 -11.53 7.11 99.48 0.71 -10.83 16 17 H -0.26 -9.02 7.11 99.48 0.71 -8.32 16 18 C -0.31 -14.65 5.34 -20.07 -0.11 -14.75 16 19 C 0.36 18.71 11.56 88.33 1.02 19.73 16 20 N -0.58 -30.93 18.51 19.01 0.35 -30.58 16 21 C 0.31 14.65 14.12 88.33 1.25 15.90 16 22 N -0.56 -26.77 18.54 19.00 0.35 -26.41 16 23 C -0.12 -2.98 4.23 30.44 0.13 -2.85 16 24 C 0.15 3.03 0.68 4.43 0.00 3.03 16 25 C -0.14 -2.41 8.21 72.49 0.60 -1.81 16 26 C -0.18 -3.69 7.66 72.09 0.55 -3.14 16 27 H 0.07 0.94 6.41 -2.39 -0.02 0.93 16 28 H 0.07 0.99 5.79 -2.39 -0.01 0.98 16 29 H 0.03 0.43 5.80 -2.39 -0.01 0.42 16 30 H 0.07 1.18 6.42 -2.39 -0.02 1.16 16 31 H 0.06 1.17 8.10 -2.39 -0.02 1.16 16 32 H 0.05 1.09 5.00 -2.39 -0.01 1.08 16 33 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.07 0.95 6.48 -2.39 -0.02 0.93 16 36 H 0.07 1.68 8.07 -2.26 -0.02 1.66 16 37 H 0.07 1.71 8.04 -2.26 -0.02 1.70 16 38 H 0.08 2.61 5.35 -2.55 -0.01 2.59 16 39 H 0.39 13.38 7.51 -92.70 -0.70 12.68 16 40 H 0.29 13.43 8.29 -92.71 -0.77 12.66 16 41 H 0.06 1.63 8.05 -2.27 -0.02 1.62 16 42 H 0.07 1.85 6.99 -2.26 -0.02 1.83 16 43 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.07 0.99 6.09 -2.38 -0.01 0.98 16 45 H 0.05 1.02 8.12 -2.38 -0.02 1.01 16 46 H 0.05 1.13 5.00 -2.39 -0.01 1.12 16 47 H 0.07 1.16 6.90 -2.39 -0.02 1.14 16 48 H 0.06 1.25 8.08 -2.39 -0.02 1.23 16 Total: -1.00 -54.79 368.44 5.28 -49.51 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: 0.31 Total: 27.74 kcal Atomic # 6 Polarization: 13.87 SS G_CDS: 6.54 Total: 20.41 kcal Atomic # 7 Polarization: -130.97 SS G_CDS: -3.60 Total: -134.58 kcal Atomic # 14 Polarization: 34.89 SS G_CDS: 2.03 Total: 36.92 kcal Total: -54.79 5.28 -49.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171623135.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.605 kcal (2) G-P(sol) polarization free energy of solvation -54.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds