Wall clock time and date at job start Tue Mar 31 2020 11:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47360 * 2 1 4 4 C 1.50704 * 109.47153 * 120.00094 * 2 1 3 5 5 N 1.30806 * 126.24281 * 300.04166 * 4 2 1 6 6 N 1.28684 * 110.28602 * 179.97438 * 5 4 2 7 7 C 1.32298 * 109.48477 * 0.02562 * 6 5 4 8 8 C 1.40827 * 133.46629 * 179.97438 * 7 6 5 9 9 C 1.36014 * 119.22606 * 180.25334 * 8 7 6 10 10 C 1.40545 * 119.74949 * 359.52993 * 9 8 7 11 11 C 1.50704 * 119.81792 * 180.23208 * 10 9 8 12 12 N 1.46901 * 109.46977 * 270.21956 * 11 10 9 13 13 C 1.46901 * 110.99909 * 180.02562 * 12 11 10 14 14 H 1.08995 * 109.47371 * 34.99445 * 13 12 11 15 15 C 1.53005 * 109.46495 * 275.00165 * 13 12 11 16 16 C 1.52992 * 109.47573 * 155.00185 * 13 12 11 17 17 C 1.53005 * 109.46862 * 294.99796 * 16 13 12 18 18 C 1.50698 * 109.46943 * 179.97438 * 17 16 13 19 19 H 1.07995 * 120.00559 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99970 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99906 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00224 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47091 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47145 * 120.00110 * 22 20 18 25 25 H 1.48504 * 109.46835 * 240.00308 * 22 20 18 26 26 C 1.34955 * 120.36487 * 0.44993 * 10 9 8 27 27 N 1.36066 * 126.24764 * 119.99821 * 4 2 1 28 28 H 1.08994 * 109.46883 * 300.00091 * 1 2 3 29 29 H 1.09004 * 109.46760 * 59.99961 * 1 2 3 30 30 H 1.08992 * 109.47062 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47505 * 239.99891 * 2 1 3 32 32 H 1.08995 * 109.46840 * 300.00192 * 3 2 1 33 33 H 1.08994 * 109.46742 * 59.99823 * 3 2 1 34 34 H 1.08997 * 109.46839 * 179.97438 * 3 2 1 35 35 H 1.08002 * 120.38322 * 359.97415 * 8 7 6 36 36 H 1.07999 * 120.12665 * 179.71735 * 9 8 7 37 37 H 1.08998 * 109.47395 * 30.22164 * 11 10 9 38 38 H 1.09007 * 109.47076 * 150.22144 * 11 10 9 39 39 H 1.00890 * 110.99985 * 56.05052 * 12 11 10 40 40 H 1.09000 * 109.46832 * 180.02562 * 15 13 12 41 41 H 1.08995 * 109.47151 * 299.99353 * 15 13 12 42 42 H 1.08997 * 109.47783 * 60.00015 * 15 13 12 43 43 H 1.09007 * 109.47288 * 54.99047 * 16 13 12 44 44 H 1.08995 * 109.47755 * 174.99612 * 16 13 12 45 45 H 1.08998 * 109.47138 * 299.99722 * 17 16 13 46 46 H 1.09003 * 109.47345 * 59.99973 * 17 16 13 47 47 H 0.96993 * 120.00028 * 179.97438 * 21 20 18 48 48 H 1.08001 * 119.74672 * 179.77430 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7922 -0.3721 2.4710 6 7 2.3711 -1.1914 3.2770 7 6 3.0217 -2.1094 2.5810 8 6 3.8084 -3.2207 2.9407 9 6 4.3594 -3.9888 1.9627 10 6 4.1292 -3.6706 0.6132 11 6 4.7346 -4.5236 -0.4717 12 7 6.0613 -3.9999 -0.8233 13 6 6.6829 -4.8081 -1.8808 14 1 5.9139 -5.1607 -2.5681 15 6 7.3952 -6.0081 -1.2533 16 6 7.6975 -3.9551 -2.6448 17 6 6.9674 -2.8259 -3.3748 18 6 7.9668 -1.9853 -4.1268 19 1 9.0176 -2.2315 -4.0878 20 6 7.5397 -0.9018 -4.8649 21 7 6.2601 -0.6016 -4.9121 22 14 8.7784 0.1398 -5.7977 23 1 10.1436 -0.4036 -5.5827 24 1 8.4567 0.1121 -7.2471 25 1 8.7198 1.5392 -5.3042 26 6 3.3726 -2.6028 0.2836 27 7 2.8178 -1.8213 1.2538 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8899 34 1 3.1300 1.4424 0.0005 35 1 3.9760 -3.4576 3.9810 36 1 4.9689 -4.8417 2.2221 37 1 4.8314 -5.5493 -0.1159 38 1 4.0911 -4.5034 -1.3514 39 1 6.6566 -3.9480 -0.0104 40 1 7.8568 -6.6075 -2.0379 41 1 8.1642 -5.6555 -0.5661 42 1 6.6724 -6.6158 -0.7090 43 1 8.4158 -3.5298 -1.9438 44 1 8.2222 -4.5770 -3.3701 45 1 6.2492 -3.2511 -4.0758 46 1 6.4427 -2.2039 -2.6495 47 1 5.9597 0.1608 -5.4310 48 1 3.2052 -2.3652 -0.7566 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172488263.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:50 Heat of formation + Delta-G solvation = 61.387261 kcal Electronic energy + Delta-G solvation = -26256.634428 eV Core-core repulsion = 22732.388072 eV Total energy + Delta-G solvation = -3524.246355 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.62240 -39.85773 -38.23913 -36.86238 -35.45339 -34.68172 -33.69243 -31.79481 -30.31584 -29.77662 -28.15293 -27.04725 -26.41514 -24.89534 -24.45327 -23.41579 -22.92565 -21.34499 -21.17383 -19.12372 -18.35564 -18.08949 -17.64131 -16.96563 -16.51024 -16.45017 -16.16706 -15.78894 -15.22681 -15.14414 -14.80253 -14.49470 -14.26826 -14.11110 -13.82697 -13.56048 -13.41170 -13.28725 -13.11220 -13.06941 -12.91285 -12.85961 -12.73308 -12.51308 -12.40790 -12.35951 -12.28205 -12.14863 -11.97595 -11.73476 -11.54790 -11.48583 -11.17765 -10.93558 -10.50257 -10.45567 -9.12667 -9.04609 -8.13290 -6.21789 -0.36106 0.03912 1.23646 1.39105 1.40485 1.52141 1.57802 2.26394 2.43839 2.94227 3.19831 3.31007 3.34362 3.51092 3.59636 3.79802 3.84842 4.03703 4.08882 4.10966 4.19030 4.27974 4.38155 4.54216 4.59650 4.61301 4.72927 4.76254 4.84046 4.84759 4.85636 4.92602 4.97224 5.03389 5.04964 5.08461 5.17487 5.21247 5.22924 5.28552 5.36993 5.41107 5.51411 5.62216 5.81820 5.92857 6.05829 6.26757 6.37882 6.64305 6.98374 7.41770 7.46069 8.97726 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.009824 B = 0.003816 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2849.464281 B = 7336.305449 C = 9575.627197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.006 4.006 3 C -0.138 4.138 4 C 0.145 3.855 5 N -0.278 5.278 6 N -0.338 5.338 7 C 0.179 3.821 8 C -0.096 4.096 9 C -0.055 4.055 10 C -0.089 4.089 11 C 0.113 3.887 12 N -0.691 5.691 13 C 0.094 3.906 14 H 0.068 0.932 15 C -0.170 4.170 16 C -0.090 4.090 17 C 0.039 3.961 18 C -0.541 4.541 19 H 0.052 0.948 20 C 0.003 3.997 21 N -0.929 5.929 22 Si 0.952 3.048 23 H -0.265 1.265 24 H -0.278 1.278 25 H -0.282 1.282 26 C 0.067 3.933 27 N -0.391 5.391 28 H 0.060 0.940 29 H 0.091 0.909 30 H 0.053 0.947 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.063 0.937 34 H 0.039 0.961 35 H 0.181 0.819 36 H 0.187 0.813 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.346 0.654 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.071 0.929 43 H 0.043 0.957 44 H 0.047 0.953 45 H -0.020 1.020 46 H 0.006 0.994 47 H 0.260 0.740 48 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.228 -9.874 11.900 17.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.027 4.027 3 C -0.196 4.196 4 C -0.119 4.119 5 N -0.117 5.117 6 N -0.184 5.184 7 C -0.070 4.070 8 C -0.117 4.117 9 C -0.080 4.080 10 C -0.093 4.093 11 C -0.016 4.016 12 N -0.323 5.323 13 C -0.016 4.016 14 H 0.086 0.914 15 C -0.229 4.229 16 C -0.128 4.128 17 C 0.002 3.998 18 C -0.579 4.579 19 H 0.070 0.930 20 C -0.195 4.195 21 N -0.570 5.570 22 Si 0.778 3.222 23 H -0.189 1.189 24 H -0.204 1.204 25 H -0.208 1.208 26 C -0.056 4.056 27 N -0.069 5.069 28 H 0.079 0.921 29 H 0.110 0.890 30 H 0.072 0.928 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.198 0.802 36 H 0.204 0.796 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.165 0.835 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.062 0.938 44 H 0.066 0.934 45 H -0.001 1.001 46 H 0.024 0.976 47 H 0.069 0.931 48 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -8.246 -8.363 12.627 17.245 hybrid contribution 1.193 -0.338 -1.226 1.744 sum -7.053 -8.701 11.401 15.983 Atomic orbital electron populations 1.21766 0.91127 1.02434 1.03756 1.19773 0.97963 0.95804 0.89188 1.21785 1.00320 0.93765 1.03728 1.25342 0.98883 0.89415 0.98227 1.74007 1.18753 1.20720 0.98203 1.74799 1.14481 1.04196 1.24879 1.22918 1.02904 1.00627 0.80555 1.20603 0.96881 0.90948 1.03234 1.21535 0.96837 0.99722 0.89863 1.19708 0.97552 0.95635 0.96408 1.20787 0.90529 0.95278 0.94996 1.60424 1.03964 1.54656 1.13218 1.21494 0.95881 0.91351 0.92828 0.91396 1.22404 1.01081 0.97990 1.01428 1.21472 0.97175 0.96678 0.97503 1.18828 0.94202 0.93248 0.93534 1.21862 0.94463 1.12325 1.29287 0.93017 1.25838 0.96872 0.98917 0.97826 1.70088 1.15544 1.28815 1.42539 0.85593 0.79688 0.78536 0.78410 1.18870 1.20419 1.20759 1.21807 0.97761 0.92116 0.93875 1.43806 1.33729 1.20634 1.08738 0.92068 0.89039 0.92787 0.88863 0.89132 0.91824 0.94220 0.80181 0.79555 0.90408 0.90391 0.83527 0.92051 0.92113 0.90960 0.93782 0.93395 1.00124 0.97578 0.93118 0.81165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 9.18 71.98 0.66 -1.95 16 2 C -0.01 -0.15 3.35 -11.54 -0.04 -0.19 16 3 C -0.14 -3.27 9.18 71.98 0.66 -2.61 16 4 C 0.14 4.36 6.64 137.71 0.92 5.28 16 5 N -0.28 -9.59 12.19 -49.68 -0.61 -10.19 16 6 N -0.34 -11.69 12.31 -55.40 -0.68 -12.38 16 7 C 0.18 5.20 7.92 134.07 1.06 6.27 16 8 C -0.10 -1.87 10.11 22.39 0.23 -1.65 16 9 C -0.06 -0.84 9.74 22.32 0.22 -0.62 16 10 C -0.09 -1.75 5.36 -20.06 -0.11 -1.86 16 11 C 0.11 2.11 5.59 85.56 0.48 2.59 16 12 N -0.69 -17.34 5.69 -495.57 -2.82 -20.16 16 13 C 0.09 2.54 2.59 44.91 0.12 2.66 16 14 H 0.07 1.93 7.80 -2.39 -0.02 1.91 16 15 C -0.17 -3.24 9.16 71.98 0.66 -2.58 16 16 C -0.09 -3.40 4.83 30.59 0.15 -3.25 16 17 C 0.04 1.97 4.86 29.85 0.15 2.12 16 18 C -0.54 -30.57 9.11 25.60 0.23 -30.33 16 19 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 20 C 0.00 0.17 5.46 84.65 0.46 0.63 16 21 N -0.93 -55.81 13.29 21.45 0.28 -55.52 16 22 Si 0.95 44.31 29.54 68.60 2.03 46.34 16 23 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 24 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 25 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 26 C 0.07 1.67 10.39 83.23 0.86 2.54 16 27 N -0.39 -11.20 2.95 -342.88 -1.01 -12.21 16 28 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 30 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.09 2.15 7.53 -2.39 -0.02 2.13 16 32 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.18 2.48 8.06 -2.91 -0.02 2.46 16 36 H 0.19 1.27 8.06 -2.91 -0.02 1.25 16 37 H 0.08 0.98 7.38 -2.39 -0.02 0.96 16 38 H 0.08 1.61 7.98 -2.38 -0.02 1.59 16 39 H 0.35 7.63 8.46 -89.70 -0.76 6.88 16 40 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 42 H 0.07 1.02 7.45 -2.39 -0.02 1.01 16 43 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 44 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 45 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 46 H 0.01 0.32 7.75 -2.39 -0.02 0.30 16 47 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 48 H 0.17 4.17 7.63 -2.91 -0.02 4.14 16 Total: -1.00 -74.44 394.45 4.07 -70.36 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 0.18 Total: 16.73 kcal Atomic # 6 Polarization: -29.66 SS G_CDS: 6.70 Total: -22.96 kcal Atomic # 7 Polarization: -105.63 SS G_CDS: -4.83 Total: -110.47 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -74.44 4.07 -70.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488263.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.752 kcal (2) G-P(sol) polarization free energy of solvation -74.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds