Wall clock time and date at job start Tue Mar 31 2020 12:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38263 * 119.99764 * 2 1 4 4 C 1.38213 * 119.99662 * 179.97438 * 3 2 1 5 5 C 1.38252 * 120.00355 * 359.80845 * 4 3 2 6 6 C 1.38215 * 119.99723 * 0.42423 * 5 4 3 7 7 C 1.50703 * 119.99975 * 179.80461 * 6 5 4 8 8 N 1.46900 * 109.47336 * 269.72826 * 7 6 5 9 9 C 1.47840 * 110.99992 * 69.15698 * 8 7 6 10 10 C 1.54906 * 104.79740 * 146.36180 * 9 8 7 11 11 C 1.55137 * 101.65340 * 322.92990 * 10 9 8 12 12 H 1.09002 * 110.70628 * 277.26996 * 11 10 9 13 13 N 1.46898 * 110.85466 * 154.10322 * 11 10 9 14 14 C 1.46903 * 111.00090 * 88.90936 * 13 11 10 15 15 H 1.09002 * 109.46797 * 35.00349 * 14 13 11 16 16 C 1.52994 * 109.47285 * 275.00093 * 14 13 11 17 17 C 1.53000 * 109.47187 * 154.99524 * 14 13 11 18 18 C 1.53000 * 109.47402 * 295.00456 * 17 14 13 19 19 C 1.50700 * 109.46763 * 179.97438 * 18 17 14 20 20 H 1.07994 * 120.00707 * 359.97438 * 19 18 17 21 21 C 1.37887 * 119.99751 * 179.97438 * 19 18 17 22 22 N 1.31519 * 119.99846 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99972 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46853 * 90.00126 * 23 21 19 25 25 H 1.48498 * 109.46852 * 209.99811 * 23 21 19 26 26 H 1.48497 * 109.47087 * 330.00069 * 23 21 19 27 27 C 1.47441 * 110.99858 * 189.99637 * 8 7 6 28 28 C 1.38213 * 120.00242 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47106 * 270.01607 * 1 2 3 30 30 H 1.08998 * 109.47287 * 30.02788 * 1 2 3 31 31 H 1.09007 * 109.47080 * 150.02058 * 1 2 3 32 32 H 1.07990 * 120.00162 * 359.97438 * 3 2 1 33 33 H 1.08004 * 119.99781 * 180.02562 * 4 3 2 34 34 H 1.08005 * 120.00323 * 180.23007 * 5 4 3 35 35 H 1.09000 * 109.47214 * 149.72266 * 7 6 5 36 36 H 1.09007 * 109.46792 * 29.73056 * 7 6 5 37 37 H 1.09005 * 110.37368 * 265.19482 * 9 8 7 38 38 H 1.08999 * 110.37573 * 27.42304 * 9 8 7 39 39 H 1.09002 * 110.99368 * 204.83396 * 10 9 8 40 40 H 1.08999 * 110.98835 * 81.02106 * 10 9 8 41 41 H 1.00903 * 111.00315 * 212.86372 * 13 11 10 42 42 H 1.09002 * 109.47374 * 179.97438 * 16 14 13 43 43 H 1.09004 * 109.47066 * 299.99472 * 16 14 13 44 44 H 1.08995 * 109.47162 * 60.00048 * 16 14 13 45 45 H 1.09005 * 109.47034 * 55.00540 * 17 14 13 46 46 H 1.08998 * 109.47339 * 174.99879 * 17 14 13 47 47 H 1.08991 * 109.47054 * 299.99442 * 18 17 14 48 48 H 1.09004 * 109.47066 * 59.99790 * 18 17 14 49 49 H 0.96996 * 120.00112 * 179.97438 * 22 21 19 50 50 H 1.09008 * 109.88448 * 117.33501 * 27 8 7 51 51 H 1.08994 * 109.89300 * 356.15285 * 27 8 7 52 52 H 1.08000 * 120.00152 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 0.0051 6 6 3.5806 -1.1968 0.0002 7 6 4.3342 -2.5020 0.0007 8 7 4.5787 -2.9268 -1.3841 9 6 5.5524 -2.0342 -2.0480 10 6 6.3412 -2.9559 -3.0113 11 6 6.4468 -4.2612 -2.1796 12 1 7.2775 -4.2039 -1.4762 13 7 6.5916 -5.4302 -3.0574 14 6 8.0063 -5.6964 -3.3506 15 1 8.6104 -5.4541 -2.4763 16 6 8.4527 -4.8350 -4.5336 17 6 8.1852 -7.1751 -3.7001 18 6 7.8575 -8.0319 -2.4757 19 6 8.0332 -9.4885 -2.8202 20 1 8.3468 -9.7745 -3.8133 21 6 7.7936 -10.4560 -1.8676 22 7 7.4121 -10.1077 -0.6580 23 14 8.0120 -12.2614 -2.2944 24 1 9.4087 -12.6734 -2.0032 25 1 7.0753 -13.0789 -1.4823 26 1 7.7257 -12.4672 -3.7369 27 6 5.0989 -4.3056 -1.4297 28 6 2.1981 -1.1969 0.0005 29 1 -0.3633 0.0003 1.0277 30 1 -0.3634 0.8897 -0.5143 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6583 2.1326 -0.0004 33 1 4.1204 2.1327 0.0010 34 1 5.3517 0.0001 0.0092 35 1 3.7453 -3.2613 0.5152 36 1 5.2867 -2.3713 0.5143 37 1 5.0335 -1.2558 -2.6075 38 1 6.2223 -1.5892 -1.3123 39 1 7.3291 -2.5463 -3.2222 40 1 5.7851 -3.1243 -3.9334 41 1 6.1468 -6.2418 -2.6552 42 1 9.5025 -5.0321 -4.7509 43 1 7.8486 -5.0774 -5.4080 44 1 8.3253 -3.7816 -4.2845 45 1 7.5148 -7.4389 -4.5181 46 1 9.2166 -7.3545 -4.0036 47 1 8.5279 -7.7683 -1.6578 48 1 6.8260 -7.8525 -2.1722 49 1 7.2432 -10.7884 0.0121 50 1 4.3987 -4.9486 -1.9632 51 1 5.2501 -4.6787 -0.4168 52 1 1.6582 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172489439.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:24 Heat of formation + Delta-G solvation = 9.188172 kcal Electronic energy + Delta-G solvation = -26050.520793 eV Core-core repulsion = 22627.551259 eV Total energy + Delta-G solvation = -3422.969534 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.97188 -38.86774 -36.65919 -33.88036 -32.99163 -32.30482 -30.97241 -29.80488 -29.26603 -27.41718 -26.83518 -25.52247 -24.73768 -22.40661 -21.46558 -21.18143 -20.47844 -20.37980 -19.54924 -16.69830 -16.39132 -16.06704 -15.98806 -15.59751 -15.01458 -14.81898 -14.54373 -14.25219 -14.01073 -13.87173 -13.53131 -13.37988 -13.24836 -12.70518 -12.53492 -12.52892 -12.36271 -12.15846 -12.02459 -11.80610 -11.73365 -11.54410 -11.40762 -11.17637 -11.08879 -10.97263 -10.94741 -10.75790 -10.66535 -10.47072 -10.13536 -9.76403 -9.28753 -9.03894 -8.96961 -8.80458 -8.37686 -8.32453 -8.02842 -6.02466 -4.04345 1.15983 1.24055 3.30799 3.37196 3.40950 3.49568 4.06157 4.44445 4.46193 4.55386 4.61777 4.70019 4.78695 4.87649 4.95071 5.08712 5.12410 5.26914 5.31525 5.33779 5.35362 5.37591 5.45249 5.50744 5.53857 5.56765 5.61377 5.68712 5.79370 5.89783 5.93092 5.93649 5.95033 5.98931 6.11288 6.18780 6.28551 6.31285 6.39067 6.40941 6.48176 6.52571 6.57145 6.83795 6.89707 6.94549 7.00582 7.07413 7.53304 7.60187 7.78263 7.88853 7.97661 8.40840 9.02340 9.59933 11.08780 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.018533 B = 0.002277 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.451724 B =12293.271643 C =13342.728374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.089 4.089 3 C -0.125 4.125 4 C -0.118 4.118 5 C -0.119 4.119 6 C -0.067 4.067 7 C 0.086 3.914 8 N -0.518 5.518 9 C 0.044 3.956 10 C -0.116 4.116 11 C 0.069 3.931 12 H 0.047 0.953 13 N -0.674 5.674 14 C 0.084 3.916 15 H 0.036 0.964 16 C -0.139 4.139 17 C -0.115 4.115 18 C 0.021 3.979 19 C -0.519 4.519 20 H 0.055 0.945 21 C 0.056 3.944 22 N -0.896 5.896 23 Si 0.892 3.108 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.273 1.273 27 C 0.040 3.960 28 C -0.099 4.099 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.083 0.917 36 H 0.044 0.956 37 H 0.077 0.923 38 H 0.042 0.958 39 H 0.068 0.932 40 H 0.084 0.916 41 H 0.354 0.646 42 H 0.049 0.951 43 H 0.057 0.943 44 H 0.047 0.953 45 H 0.057 0.943 46 H 0.053 0.947 47 H 0.011 0.989 48 H 0.015 0.985 49 H 0.260 0.740 50 H 0.090 0.910 51 H 0.056 0.944 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.945 23.442 1.506 25.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.089 4.089 3 C -0.143 4.143 4 C -0.136 4.136 5 C -0.137 4.137 6 C -0.068 4.068 7 C -0.042 4.042 8 N -0.242 5.242 9 C -0.084 4.084 10 C -0.155 4.155 11 C -0.043 4.043 12 H 0.065 0.935 13 N -0.309 5.309 14 C -0.026 4.026 15 H 0.054 0.946 16 C -0.197 4.197 17 C -0.153 4.153 18 C -0.016 4.016 19 C -0.557 4.557 20 H 0.073 0.927 21 C -0.145 4.145 22 N -0.536 5.536 23 Si 0.720 3.280 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.198 1.198 27 C -0.088 4.088 28 C -0.117 4.117 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.101 0.899 36 H 0.062 0.938 37 H 0.095 0.905 38 H 0.060 0.940 39 H 0.086 0.914 40 H 0.103 0.897 41 H 0.177 0.823 42 H 0.068 0.932 43 H 0.076 0.924 44 H 0.066 0.934 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.029 0.971 48 H 0.033 0.967 49 H 0.070 0.930 50 H 0.108 0.892 51 H 0.074 0.926 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.580 23.705 0.852 25.582 hybrid contribution 1.272 -1.404 1.241 2.265 sum -8.308 22.301 2.092 23.890 Atomic orbital electron populations 1.20788 0.91291 1.02802 1.02200 1.19921 0.96034 0.93174 0.99786 1.20995 0.94261 0.97389 1.01657 1.21066 0.94298 0.97810 1.00442 1.21038 0.99609 0.92131 1.00972 1.19734 0.93794 0.94365 0.98879 1.21282 0.98512 0.94243 0.90175 1.63605 1.43985 1.02058 1.14551 1.23078 0.92812 0.95970 0.96556 1.22833 0.99634 0.94020 0.99011 1.22739 0.96054 0.92497 0.92980 0.93539 1.60628 1.15167 1.07649 1.47489 1.21652 0.87624 0.96749 0.96561 0.94620 1.21876 0.99925 0.99049 0.98829 1.21840 1.00775 0.91666 1.01037 1.19120 0.96356 0.94035 0.92095 1.21240 1.45474 0.91448 0.97517 0.92658 1.25030 0.95266 0.99123 0.95055 1.69956 1.46856 1.33427 1.03337 0.86595 0.77892 0.85096 0.78442 1.20732 1.21230 1.19833 1.23012 0.95656 0.90208 0.99894 1.20914 0.93471 0.97567 0.99765 0.91302 0.91691 0.91415 0.86417 0.86288 0.86522 0.89850 0.93808 0.90501 0.93989 0.91378 0.89713 0.82332 0.93236 0.92388 0.93425 0.92409 0.92778 0.97074 0.96674 0.93040 0.89207 0.92577 0.85980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.01 36.00 0.36 -0.43 16 2 C -0.09 -0.83 5.88 -104.62 -0.62 -1.44 16 3 C -0.12 -1.10 9.70 -39.58 -0.38 -1.48 16 4 C -0.12 -1.05 10.05 -39.59 -0.40 -1.45 16 5 C -0.12 -1.16 8.93 -39.58 -0.35 -1.52 16 6 C -0.07 -0.72 5.09 -104.62 -0.53 -1.25 16 7 C 0.09 0.94 4.72 -4.97 -0.02 0.92 16 8 N -0.52 -6.37 5.15 -232.69 -1.20 -7.57 16 9 C 0.04 0.50 5.62 -2.30 -0.01 0.49 16 10 C -0.12 -1.44 5.65 -24.59 -0.14 -1.58 16 11 C 0.07 0.98 3.23 -65.89 -0.21 0.77 16 12 H 0.05 0.70 7.49 -51.93 -0.39 0.32 16 13 N -0.67 -11.10 6.16 -97.84 -0.60 -11.71 16 14 C 0.08 1.44 2.65 -67.71 -0.18 1.26 16 15 H 0.04 0.65 7.46 -51.93 -0.39 0.26 16 16 C -0.14 -2.03 9.23 37.15 0.34 -1.69 16 17 C -0.12 -2.36 4.74 -26.73 -0.13 -2.49 16 18 C 0.02 0.53 4.80 -27.88 -0.13 0.40 16 19 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 20 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 21 C 0.06 1.61 5.46 -17.81 -0.10 1.51 16 22 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 23 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 27 C 0.04 0.54 6.37 -2.84 -0.02 0.53 16 28 C -0.10 -1.02 9.36 -39.58 -0.37 -1.39 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 31 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 32 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 33 H 0.12 0.82 8.06 -52.48 -0.42 0.39 16 34 H 0.12 1.02 7.50 -52.48 -0.39 0.63 16 35 H 0.08 0.89 7.98 -51.93 -0.41 0.47 16 36 H 0.04 0.47 7.79 -51.93 -0.40 0.07 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.04 0.45 7.00 -51.93 -0.36 0.09 16 39 H 0.07 0.79 6.81 -51.93 -0.35 0.44 16 40 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.35 6.48 6.12 -39.29 -0.24 6.24 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.05 0.63 5.76 -51.93 -0.30 0.33 16 45 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 48 H 0.02 0.39 6.43 -51.93 -0.33 0.06 16 49 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 50 H 0.09 1.30 7.94 -51.92 -0.41 0.89 16 51 H 0.06 0.75 7.55 -51.93 -0.39 0.36 16 52 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 403.43 15.07 6.08 6.08 Total: -1.00 -29.63 403.43 -12.63 -42.26 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -9.42 Total: 4.01 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: -3.21 Total: -23.77 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: -1.07 Total: -45.23 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -29.63 -12.63 -42.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172489439.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.446 kcal (2) G-P(sol) polarization free energy of solvation -29.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds