Wall clock time and date at job start Tue Mar 31 2020 12:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38263 * 119.99764 * 2 1 4 4 C 1.38213 * 119.99662 * 179.97438 * 3 2 1 5 5 C 1.38252 * 120.00355 * 359.80845 * 4 3 2 6 6 C 1.38215 * 119.99723 * 0.42423 * 5 4 3 7 7 C 1.50703 * 119.99975 * 179.80461 * 6 5 4 8 8 N 1.46900 * 109.47336 * 269.72826 * 7 6 5 9 9 C 1.47840 * 110.99992 * 69.15698 * 8 7 6 10 10 C 1.54906 * 104.79740 * 146.36180 * 9 8 7 11 11 C 1.55137 * 101.65340 * 322.92990 * 10 9 8 12 12 H 1.09002 * 110.70628 * 277.26996 * 11 10 9 13 13 N 1.46898 * 110.85466 * 154.10322 * 11 10 9 14 14 C 1.46903 * 111.00090 * 88.90936 * 13 11 10 15 15 H 1.09002 * 109.46797 * 35.00349 * 14 13 11 16 16 C 1.52994 * 109.47285 * 275.00093 * 14 13 11 17 17 C 1.53000 * 109.47187 * 154.99524 * 14 13 11 18 18 C 1.53000 * 109.47402 * 295.00456 * 17 14 13 19 19 C 1.50700 * 109.46763 * 179.97438 * 18 17 14 20 20 H 1.07994 * 120.00707 * 359.97438 * 19 18 17 21 21 C 1.37887 * 119.99751 * 179.97438 * 19 18 17 22 22 N 1.31519 * 119.99846 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99972 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46853 * 90.00126 * 23 21 19 25 25 H 1.48498 * 109.46852 * 209.99811 * 23 21 19 26 26 H 1.48497 * 109.47087 * 330.00069 * 23 21 19 27 27 C 1.47441 * 110.99858 * 189.99637 * 8 7 6 28 28 C 1.38213 * 120.00242 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47106 * 270.01607 * 1 2 3 30 30 H 1.08998 * 109.47287 * 30.02788 * 1 2 3 31 31 H 1.09007 * 109.47080 * 150.02058 * 1 2 3 32 32 H 1.07990 * 120.00162 * 359.97438 * 3 2 1 33 33 H 1.08004 * 119.99781 * 180.02562 * 4 3 2 34 34 H 1.08005 * 120.00323 * 180.23007 * 5 4 3 35 35 H 1.09000 * 109.47214 * 149.72266 * 7 6 5 36 36 H 1.09007 * 109.46792 * 29.73056 * 7 6 5 37 37 H 1.09005 * 110.37368 * 265.19482 * 9 8 7 38 38 H 1.08999 * 110.37573 * 27.42304 * 9 8 7 39 39 H 1.09002 * 110.99368 * 204.83396 * 10 9 8 40 40 H 1.08999 * 110.98835 * 81.02106 * 10 9 8 41 41 H 1.00903 * 111.00315 * 212.86372 * 13 11 10 42 42 H 1.09002 * 109.47374 * 179.97438 * 16 14 13 43 43 H 1.09004 * 109.47066 * 299.99472 * 16 14 13 44 44 H 1.08995 * 109.47162 * 60.00048 * 16 14 13 45 45 H 1.09005 * 109.47034 * 55.00540 * 17 14 13 46 46 H 1.08998 * 109.47339 * 174.99879 * 17 14 13 47 47 H 1.08991 * 109.47054 * 299.99442 * 18 17 14 48 48 H 1.09004 * 109.47066 * 59.99790 * 18 17 14 49 49 H 0.96996 * 120.00112 * 179.97438 * 22 21 19 50 50 H 1.09008 * 109.88448 * 117.33501 * 27 8 7 51 51 H 1.08994 * 109.89300 * 356.15285 * 27 8 7 52 52 H 1.08000 * 120.00152 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 0.0051 6 6 3.5806 -1.1968 0.0002 7 6 4.3342 -2.5020 0.0007 8 7 4.5787 -2.9268 -1.3841 9 6 5.5524 -2.0342 -2.0480 10 6 6.3412 -2.9559 -3.0113 11 6 6.4468 -4.2612 -2.1796 12 1 7.2775 -4.2039 -1.4762 13 7 6.5916 -5.4302 -3.0574 14 6 8.0063 -5.6964 -3.3506 15 1 8.6104 -5.4541 -2.4763 16 6 8.4527 -4.8350 -4.5336 17 6 8.1852 -7.1751 -3.7001 18 6 7.8575 -8.0319 -2.4757 19 6 8.0332 -9.4885 -2.8202 20 1 8.3468 -9.7745 -3.8133 21 6 7.7936 -10.4560 -1.8676 22 7 7.4121 -10.1077 -0.6580 23 14 8.0120 -12.2614 -2.2944 24 1 9.4087 -12.6734 -2.0032 25 1 7.0753 -13.0789 -1.4823 26 1 7.7257 -12.4672 -3.7369 27 6 5.0989 -4.3056 -1.4297 28 6 2.1981 -1.1969 0.0005 29 1 -0.3633 0.0003 1.0277 30 1 -0.3634 0.8897 -0.5143 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6583 2.1326 -0.0004 33 1 4.1204 2.1327 0.0010 34 1 5.3517 0.0001 0.0092 35 1 3.7453 -3.2613 0.5152 36 1 5.2867 -2.3713 0.5143 37 1 5.0335 -1.2558 -2.6075 38 1 6.2223 -1.5892 -1.3123 39 1 7.3291 -2.5463 -3.2222 40 1 5.7851 -3.1243 -3.9334 41 1 6.1468 -6.2418 -2.6552 42 1 9.5025 -5.0321 -4.7509 43 1 7.8486 -5.0774 -5.4080 44 1 8.3253 -3.7816 -4.2845 45 1 7.5148 -7.4389 -4.5181 46 1 9.2166 -7.3545 -4.0036 47 1 8.5279 -7.7683 -1.6578 48 1 6.8260 -7.8525 -2.1722 49 1 7.2432 -10.7884 0.0121 50 1 4.3987 -4.9486 -1.9632 51 1 5.2501 -4.6787 -0.4168 52 1 1.6582 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172489439.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:23 Heat of formation + Delta-G solvation = -6.766020 kcal Electronic energy + Delta-G solvation = -26051.212619 eV Core-core repulsion = 22627.551259 eV Total energy + Delta-G solvation = -3423.661360 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.83755 -39.82478 -38.00124 -35.38428 -34.38664 -33.20883 -32.24063 -30.90500 -30.74781 -28.36071 -27.62809 -27.05200 -26.06976 -23.28304 -23.15198 -22.05442 -21.54818 -21.27717 -21.09269 -18.51844 -17.46649 -17.13328 -17.00515 -16.55833 -16.37087 -16.20605 -15.93900 -15.30937 -15.01144 -14.64949 -14.50764 -14.45127 -14.38157 -14.23874 -13.90609 -13.59202 -13.33103 -13.21823 -13.07463 -13.03678 -12.85067 -12.81215 -12.73941 -12.49103 -12.43035 -12.35806 -12.03253 -12.00282 -11.76915 -11.73387 -11.56787 -11.48790 -11.29890 -10.92657 -10.55934 -9.70955 -9.52354 -9.37659 -9.28141 -8.21488 -6.31760 0.43924 0.52818 1.38798 1.39659 1.51024 2.39787 2.70894 3.08051 3.12378 3.30445 3.56608 3.78749 3.89261 3.92084 4.06054 4.11091 4.15538 4.26136 4.31105 4.32084 4.38220 4.41745 4.49412 4.53834 4.62647 4.64354 4.69887 4.77459 4.84410 4.84877 4.87312 4.90706 4.97416 5.00786 5.02585 5.07952 5.14401 5.20400 5.22602 5.30405 5.33633 5.45862 5.53167 5.59255 5.67929 5.70349 5.75420 5.83083 5.93182 6.04055 6.17147 6.23676 6.27002 6.41354 6.84631 7.37289 8.89837 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.018533 B = 0.002277 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.451724 B =12293.271643 C =13342.728374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.098 4.098 3 C -0.130 4.130 4 C -0.121 4.121 5 C -0.128 4.128 6 C -0.081 4.081 7 C 0.088 3.912 8 N -0.524 5.524 9 C 0.050 3.950 10 C -0.106 4.106 11 C 0.067 3.933 12 H 0.039 0.961 13 N -0.675 5.675 14 C 0.089 3.911 15 H 0.025 0.975 16 C -0.130 4.130 17 C -0.103 4.103 18 C 0.028 3.972 19 C -0.542 4.542 20 H 0.058 0.942 21 C 0.000 4.000 22 N -0.931 5.931 23 Si 0.962 3.038 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.264 1.264 27 C 0.045 3.955 28 C -0.116 4.116 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.125 0.875 35 H 0.079 0.921 36 H 0.045 0.955 37 H 0.082 0.918 38 H 0.052 0.948 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.340 0.660 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.064 0.936 45 H 0.055 0.945 46 H 0.056 0.944 47 H -0.018 1.018 48 H -0.001 1.001 49 H 0.263 0.737 50 H 0.076 0.924 51 H 0.051 0.949 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.940 24.859 0.646 26.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.098 4.098 3 C -0.148 4.148 4 C -0.139 4.139 5 C -0.147 4.147 6 C -0.081 4.081 7 C -0.039 4.039 8 N -0.248 5.248 9 C -0.078 4.078 10 C -0.145 4.145 11 C -0.044 4.044 12 H 0.057 0.943 13 N -0.308 5.308 14 C -0.020 4.020 15 H 0.043 0.957 16 C -0.188 4.188 17 C -0.141 4.141 18 C -0.009 4.009 19 C -0.580 4.580 20 H 0.076 0.924 21 C -0.197 4.197 22 N -0.572 5.572 23 Si 0.787 3.213 24 H -0.199 1.199 25 H -0.207 1.207 26 H -0.188 1.188 27 C -0.083 4.083 28 C -0.135 4.135 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.157 0.843 33 H 0.159 0.841 34 H 0.143 0.857 35 H 0.098 0.902 36 H 0.064 0.936 37 H 0.100 0.900 38 H 0.071 0.929 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.160 0.840 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.074 0.926 46 H 0.075 0.925 47 H 0.001 0.999 48 H 0.018 0.982 49 H 0.072 0.928 50 H 0.095 0.905 51 H 0.069 0.931 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.568 25.147 -0.022 26.905 hybrid contribution 1.236 -1.801 1.556 2.682 sum -8.332 23.345 1.534 24.835 Atomic orbital electron populations 1.20821 0.89821 1.03386 1.02923 1.20223 0.97295 0.93015 0.99225 1.21322 0.94515 0.98078 1.00861 1.21373 0.94619 0.98357 0.99548 1.21192 1.00137 0.92184 1.01156 1.19743 0.94006 0.94335 1.00024 1.21259 0.98652 0.94676 0.89343 1.63600 1.44161 1.01424 1.15599 1.23055 0.92651 0.95578 0.96470 1.22755 1.00405 0.92878 0.98455 1.22796 0.96017 0.92534 0.93072 0.94344 1.60741 1.14480 1.07640 1.47950 1.21581 0.88001 0.95019 0.97438 0.95656 1.21794 1.00448 0.99334 0.97218 1.21661 1.00683 0.93183 0.98532 1.18991 0.94679 0.94024 0.93197 1.21690 1.45487 0.93051 0.97764 0.92390 1.25951 0.94814 1.04084 0.94884 1.70084 1.47674 1.35039 1.04380 0.85483 0.78096 0.79120 0.78585 1.19890 1.20742 1.18815 1.22883 0.95031 0.91079 0.99290 1.21039 0.93624 0.98135 1.00693 0.90446 0.90413 0.91538 0.84273 0.84136 0.85746 0.90213 0.93639 0.89992 0.92932 0.90051 0.90472 0.83992 0.92139 0.92375 0.91708 0.92607 0.92490 0.99929 0.98240 0.92848 0.90530 0.93096 0.86273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 10.01 71.24 0.71 -0.70 16 2 C -0.10 -1.70 5.88 -19.86 -0.12 -1.82 16 3 C -0.13 -2.03 9.70 22.27 0.22 -1.81 16 4 C -0.12 -1.92 10.05 22.27 0.22 -1.69 16 5 C -0.13 -2.35 8.93 22.27 0.20 -2.15 16 6 C -0.08 -1.68 5.09 -19.87 -0.10 -1.78 16 7 C 0.09 1.95 4.72 85.56 0.40 2.35 16 8 N -0.52 -12.84 5.15 -890.09 -4.59 -17.43 16 9 C 0.05 1.08 5.62 86.77 0.49 1.57 16 10 C -0.11 -2.51 5.65 31.98 0.18 -2.33 16 11 C 0.07 1.92 3.23 46.09 0.15 2.07 16 12 H 0.04 1.18 7.49 -2.39 -0.02 1.16 16 13 N -0.67 -22.54 6.16 -463.46 -2.86 -25.40 16 14 C 0.09 3.06 2.65 44.91 0.12 3.18 16 15 H 0.03 0.92 7.46 -2.39 -0.02 0.91 16 16 C -0.13 -3.57 9.23 71.98 0.66 -2.90 16 17 C -0.10 -4.24 4.74 30.59 0.15 -4.10 16 18 C 0.03 1.48 4.80 29.85 0.14 1.62 16 19 C -0.54 -30.98 9.11 25.60 0.23 -30.74 16 20 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 21 C 0.00 0.03 5.46 84.66 0.46 0.49 16 22 N -0.93 -56.59 13.29 21.45 0.28 -56.31 16 23 Si 0.96 44.56 29.54 68.60 2.03 46.59 16 24 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 25 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 26 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 27 C 0.05 1.27 6.37 86.65 0.55 1.82 16 28 C -0.12 -2.38 9.36 22.27 0.21 -2.17 16 29 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.08 0.77 8.09 -2.39 -0.02 0.75 16 31 H 0.07 0.84 8.09 -2.38 -0.02 0.82 16 32 H 0.14 1.51 8.06 -2.92 -0.02 1.49 16 33 H 0.14 1.55 8.06 -2.91 -0.02 1.52 16 34 H 0.12 2.00 7.50 -2.91 -0.02 1.98 16 35 H 0.08 1.77 7.98 -2.39 -0.02 1.75 16 36 H 0.05 0.97 7.79 -2.38 -0.02 0.96 16 37 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 38 H 0.05 1.04 7.00 -2.39 -0.02 1.02 16 39 H 0.08 1.71 6.81 -2.39 -0.02 1.69 16 40 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.34 12.99 6.12 -89.69 -0.55 12.44 16 42 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 44 H 0.06 1.55 5.76 -2.39 -0.01 1.54 16 45 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 46 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 47 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 48 H 0.00 -0.03 6.43 -2.39 -0.02 -0.05 16 49 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 50 H 0.08 2.33 7.94 -2.38 -0.02 2.31 16 51 H 0.05 1.44 7.55 -2.39 -0.02 1.42 16 52 H 0.12 2.38 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -63.73 403.43 0.07 -63.66 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: 0.32 Total: 27.99 kcal Atomic # 6 Polarization: -43.99 SS G_CDS: 4.88 Total: -39.11 kcal Atomic # 7 Polarization: -91.98 SS G_CDS: -7.16 Total: -99.13 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -63.73 0.07 -63.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172489439.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.895 kcal (2) G-P(sol) polarization free energy of solvation -63.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds