Wall clock time and date at job start Tue Mar 31 2020 12:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38260 * 119.99539 * 2 1 4 4 C 1.38211 * 119.99784 * 179.97438 * 3 2 1 5 5 C 1.38263 * 119.99669 * 359.81584 * 4 3 2 6 6 C 1.38210 * 120.00172 * 0.41628 * 5 4 3 7 7 C 1.50703 * 119.99871 * 179.81073 * 6 5 4 8 8 N 1.46899 * 109.47107 * 269.72669 * 7 6 5 9 9 C 1.48534 * 110.99830 * 52.60468 * 8 7 6 10 10 C 1.54939 * 103.22817 * 159.71871 * 9 8 7 11 11 C 1.54596 * 102.92012 * 322.58829 * 10 9 8 12 12 H 1.09001 * 110.39035 * 262.99147 * 11 10 9 13 13 N 1.46904 * 110.31094 * 140.87210 * 11 10 9 14 14 C 1.46899 * 110.99837 * 89.28045 * 13 11 10 15 15 H 1.08999 * 109.47552 * 324.99704 * 14 13 11 16 16 C 1.52998 * 109.47137 * 85.00623 * 14 13 11 17 17 C 1.53007 * 109.46905 * 205.00092 * 14 13 11 18 18 C 1.53007 * 109.46927 * 65.00298 * 17 14 13 19 19 C 1.50703 * 109.46700 * 179.97438 * 18 17 14 20 20 H 1.07998 * 120.00302 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99698 * 179.97438 * 19 18 17 22 22 N 1.31516 * 119.99955 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00040 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47173 * 89.99977 * 23 21 19 25 25 H 1.48501 * 109.47022 * 210.00324 * 23 21 19 26 26 H 1.48504 * 109.46765 * 329.99993 * 23 21 19 27 27 C 1.47901 * 111.00170 * 169.99808 * 8 7 6 28 28 C 1.38210 * 119.99948 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.46908 * 270.01509 * 1 2 3 30 30 H 1.08998 * 109.47536 * 30.02046 * 1 2 3 31 31 H 1.09009 * 109.46935 * 150.02159 * 1 2 3 32 32 H 1.08003 * 119.99991 * 0.02562 * 3 2 1 33 33 H 1.08003 * 120.00129 * 180.02562 * 4 3 2 34 34 H 1.08001 * 119.99573 * 180.23312 * 5 4 3 35 35 H 1.09002 * 109.47152 * 149.72756 * 7 6 5 36 36 H 1.09001 * 109.46980 * 29.72856 * 7 6 5 37 37 H 1.08996 * 110.66891 * 278.15580 * 9 8 7 38 38 H 1.09001 * 110.67193 * 41.28416 * 9 8 7 39 39 H 1.08998 * 110.72475 * 204.22657 * 10 9 8 40 40 H 1.09003 * 110.87498 * 81.01220 * 10 9 8 41 41 H 1.00899 * 111.00119 * 213.23775 * 13 11 10 42 42 H 1.09001 * 109.46740 * 299.99602 * 16 14 13 43 43 H 1.08999 * 109.47156 * 59.99330 * 16 14 13 44 44 H 1.09000 * 109.47267 * 179.97438 * 16 14 13 45 45 H 1.08999 * 109.47124 * 184.99913 * 17 14 13 46 46 H 1.09001 * 109.47043 * 305.00561 * 17 14 13 47 47 H 1.08999 * 109.46904 * 299.99750 * 18 17 14 48 48 H 1.08991 * 109.47053 * 60.00106 * 18 17 14 49 49 H 0.96994 * 119.99839 * 179.97438 * 22 21 19 50 50 H 1.08999 * 109.91618 * 333.51273 * 27 8 7 51 51 H 1.08998 * 109.91656 * 94.80222 * 27 8 7 52 52 H 1.07993 * 120.00257 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1975 0.0005 5 6 4.2716 0.0001 0.0049 6 6 3.5806 -1.1969 0.0001 7 6 4.3342 -2.5019 0.0005 8 7 4.5786 -2.9267 -1.3843 9 6 5.2241 -1.8423 -2.1676 10 6 5.8652 -2.5984 -3.3584 11 6 6.3600 -3.9109 -2.7084 12 1 7.4177 -3.8346 -2.4561 13 7 6.1334 -5.0454 -3.6138 14 6 7.2852 -5.2476 -4.5028 15 1 7.7211 -4.2818 -4.7583 16 6 8.3324 -6.1081 -3.7930 17 6 6.8258 -5.9536 -5.7801 18 6 5.8731 -5.0396 -6.5535 19 6 5.4211 -5.7348 -7.8119 20 1 5.7773 -6.7292 -8.0373 21 6 4.5520 -5.1018 -8.6750 22 7 4.1178 -3.8911 -8.4003 23 14 3.9911 -5.9637 -10.2344 24 1 2.7559 -6.7390 -9.9546 25 1 3.7135 -4.9528 -11.2862 26 1 5.0582 -6.8844 -10.7022 27 6 5.5157 -4.0701 -1.4305 28 6 2.1981 -1.1969 0.0005 29 1 -0.3633 0.0003 1.0277 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3633 -0.8903 -0.5135 32 1 1.6581 2.1327 0.0004 33 1 4.1203 2.1328 0.0010 34 1 5.3516 0.0002 0.0091 35 1 3.7453 -3.2614 0.5150 36 1 5.2868 -2.3713 0.5140 37 1 4.4806 -1.1280 -2.5209 38 1 5.9886 -1.3413 -1.5737 39 1 6.7011 -2.0325 -3.7696 40 1 5.1246 -2.8059 -4.1308 41 1 5.9247 -5.8855 -3.0955 42 1 8.6597 -5.6051 -2.8830 43 1 7.8965 -7.0739 -3.5376 44 1 9.1869 -6.2586 -4.4528 45 1 7.6924 -6.1832 -6.4001 46 1 6.3105 -6.8780 -5.5190 47 1 5.0065 -4.8101 -5.9335 48 1 6.3883 -4.1153 -6.8145 49 1 3.5067 -3.4457 -9.0076 50 1 6.1630 -4.0553 -0.5536 51 1 4.9581 -5.0059 -1.4679 52 1 1.6581 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172489440.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:27 Heat of formation + Delta-G solvation = 13.448807 kcal Electronic energy + Delta-G solvation = -26347.797459 eV Core-core repulsion = 22925.012680 eV Total energy + Delta-G solvation = -3422.784779 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.97955 -38.77022 -36.60157 -33.81923 -32.90659 -32.27450 -30.90032 -29.79617 -28.95339 -27.32002 -26.78699 -25.25931 -24.83301 -22.45931 -21.44771 -21.19217 -20.45151 -20.06878 -19.60546 -16.61259 -16.15662 -16.03624 -15.89515 -15.56278 -15.16864 -14.57718 -14.29951 -14.19872 -13.95264 -13.82799 -13.46795 -13.27584 -13.14421 -12.81776 -12.46450 -12.45407 -12.28048 -12.24561 -11.98220 -11.91222 -11.58200 -11.37750 -11.20264 -11.11584 -11.05112 -10.96556 -10.85789 -10.67154 -10.54318 -10.39834 -10.10381 -9.56743 -9.15298 -8.94465 -8.83752 -8.74998 -8.33911 -8.17422 -7.80789 -5.82778 -3.83627 1.20163 1.29428 3.40920 3.46734 3.49852 3.55280 4.15143 4.45797 4.54301 4.58767 4.65500 4.74145 4.80898 4.96411 5.05340 5.10297 5.20036 5.27179 5.35821 5.39104 5.41763 5.45881 5.48725 5.52569 5.55971 5.57175 5.59626 5.68350 5.69875 5.82199 5.90860 5.94598 6.01405 6.08378 6.15578 6.18891 6.29690 6.33754 6.44129 6.45910 6.51691 6.69633 6.75170 6.87872 6.92661 6.97412 7.04982 7.37944 7.61413 7.87390 7.91055 8.14508 8.30834 8.63802 9.25438 9.78562 11.28152 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011776 B = 0.002875 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.190137 B = 9736.962606 C =11434.895480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.088 4.088 3 C -0.123 4.123 4 C -0.118 4.118 5 C -0.119 4.119 6 C -0.075 4.075 7 C 0.085 3.915 8 N -0.502 5.502 9 C 0.040 3.960 10 C -0.115 4.115 11 C 0.081 3.919 12 H 0.043 0.957 13 N -0.659 5.659 14 C 0.084 3.916 15 H 0.070 0.930 16 C -0.180 4.180 17 C -0.098 4.098 18 C 0.031 3.969 19 C -0.518 4.518 20 H 0.050 0.950 21 C 0.056 3.944 22 N -0.893 5.893 23 Si 0.886 3.114 24 H -0.282 1.282 25 H -0.288 1.288 26 H -0.276 1.276 27 C 0.038 3.962 28 C -0.097 4.097 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.117 0.883 35 H 0.082 0.918 36 H 0.041 0.959 37 H 0.081 0.919 38 H 0.037 0.963 39 H 0.063 0.937 40 H 0.099 0.901 41 H 0.334 0.666 42 H 0.042 0.958 43 H 0.053 0.947 44 H 0.058 0.942 45 H 0.044 0.956 46 H 0.046 0.954 47 H 0.034 0.966 48 H 0.006 0.994 49 H 0.257 0.743 50 H 0.040 0.960 51 H 0.085 0.915 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.568 7.575 22.252 23.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.088 4.088 3 C -0.141 4.141 4 C -0.136 4.136 5 C -0.137 4.137 6 C -0.075 4.075 7 C -0.043 4.043 8 N -0.226 5.226 9 C -0.088 4.088 10 C -0.153 4.153 11 C -0.030 4.030 12 H 0.061 0.939 13 N -0.290 5.290 14 C -0.026 4.026 15 H 0.089 0.911 16 C -0.239 4.239 17 C -0.136 4.136 18 C -0.006 4.006 19 C -0.557 4.557 20 H 0.068 0.932 21 C -0.144 4.144 22 N -0.533 5.533 23 Si 0.714 3.286 24 H -0.208 1.208 25 H -0.214 1.214 26 H -0.201 1.201 27 C -0.091 4.091 28 C -0.116 4.116 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.135 0.865 35 H 0.101 0.899 36 H 0.059 0.941 37 H 0.100 0.900 38 H 0.056 0.944 39 H 0.082 0.918 40 H 0.117 0.883 41 H 0.153 0.847 42 H 0.061 0.939 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.052 0.948 48 H 0.024 0.976 49 H 0.067 0.933 50 H 0.058 0.942 51 H 0.104 0.896 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.400 7.923 21.513 22.929 hybrid contribution 1.177 -0.548 0.067 1.300 sum 0.777 7.376 21.580 22.819 Atomic orbital electron populations 1.20795 0.91227 1.03013 1.02100 1.19932 0.96110 0.93155 0.99606 1.21015 0.94264 0.97452 1.01353 1.21070 0.94317 0.97817 1.00389 1.21033 0.99538 0.92149 1.01021 1.19715 0.93901 0.94295 0.99600 1.21254 0.98283 0.94048 0.90721 1.64880 1.42201 1.05587 1.09889 1.23247 0.96859 0.94147 0.94500 1.22621 1.00996 0.93888 0.97840 1.22325 0.96221 0.93366 0.91091 0.93938 1.60653 1.39545 1.06795 1.21998 1.21769 0.88286 0.98535 0.93987 0.91134 1.22549 1.00654 1.00493 1.00229 1.21624 0.99474 0.99223 0.93284 1.18981 0.94486 0.93514 0.93601 1.21352 1.26634 1.01543 1.06134 0.93216 1.24990 0.96522 0.94931 0.97959 1.69977 1.33374 1.12853 1.37093 0.86705 0.78999 0.79328 0.83581 1.20804 1.21395 1.20114 1.23083 0.93674 0.95922 0.96386 1.20917 0.93418 0.97648 0.99612 0.91364 0.91594 0.91301 0.86333 0.86221 0.86546 0.89941 0.94135 0.90013 0.94448 0.91792 0.88270 0.84660 0.93934 0.92780 0.92329 0.93683 0.93526 0.94778 0.97601 0.93300 0.94167 0.89646 0.85890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 10.01 36.01 0.36 -0.56 16 2 C -0.09 -0.90 5.88 -104.62 -0.62 -1.52 16 3 C -0.12 -1.20 9.70 -39.58 -0.38 -1.58 16 4 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 5 C -0.12 -1.23 8.36 -39.58 -0.33 -1.56 16 6 C -0.07 -0.83 4.59 -104.62 -0.48 -1.31 16 7 C 0.08 0.91 5.19 -4.98 -0.03 0.89 16 8 N -0.50 -6.54 5.39 -231.89 -1.25 -7.79 16 9 C 0.04 0.54 4.97 -1.90 -0.01 0.53 16 10 C -0.11 -1.77 6.73 -24.87 -0.17 -1.94 16 11 C 0.08 1.13 3.08 -66.36 -0.20 0.93 16 12 H 0.04 0.57 7.19 -51.93 -0.37 0.19 16 13 N -0.66 -10.65 5.49 -98.32 -0.54 -11.19 16 14 C 0.08 1.41 2.44 -67.71 -0.17 1.25 16 15 H 0.07 1.26 7.83 -51.93 -0.41 0.85 16 16 C -0.18 -2.44 9.15 37.16 0.34 -2.10 16 17 C -0.10 -2.06 4.83 -26.72 -0.13 -2.18 16 18 C 0.03 0.83 4.86 -27.88 -0.14 0.69 16 19 C -0.52 -15.18 9.11 -34.44 -0.31 -15.50 16 20 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 21 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 22 N -0.89 -27.70 13.29 55.43 0.74 -26.96 16 23 Si 0.89 22.36 29.54 -169.99 -5.02 17.34 16 24 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 C 0.04 0.46 6.40 -2.76 -0.02 0.44 16 28 C -0.10 -1.08 9.36 -39.58 -0.37 -1.45 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 31 H 0.07 0.55 8.09 -51.92 -0.42 0.13 16 32 H 0.12 0.93 8.06 -52.48 -0.42 0.50 16 33 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 34 H 0.12 1.08 7.41 -52.49 -0.39 0.69 16 35 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 36 H 0.04 0.40 7.75 -51.93 -0.40 0.00 16 37 H 0.08 1.18 7.74 -51.93 -0.40 0.78 16 38 H 0.04 0.44 7.11 -51.93 -0.37 0.07 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.10 1.93 8.06 -51.93 -0.42 1.51 16 41 H 0.33 4.90 7.76 -39.29 -0.30 4.60 16 42 H 0.04 0.51 7.48 -51.93 -0.39 0.13 16 43 H 0.05 0.70 8.13 -51.93 -0.42 0.28 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.03 0.98 7.75 -51.93 -0.40 0.57 16 48 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 49 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 50 H 0.04 0.43 7.57 -51.93 -0.39 0.03 16 51 H 0.09 1.07 7.47 -51.93 -0.39 0.68 16 52 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 407.76 15.07 6.14 6.14 Total: -1.00 -31.72 407.76 -12.74 -44.46 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -9.67 Total: 2.95 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: -3.14 Total: -24.95 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: -1.05 Total: -45.94 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.72 -12.74 -44.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172489440.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.905 kcal (2) G-P(sol) polarization free energy of solvation -31.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds