Wall clock time and date at job start Tue Mar 31 2020 12:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38260 * 119.99539 * 2 1 4 4 C 1.38211 * 119.99784 * 179.97438 * 3 2 1 5 5 C 1.38263 * 119.99669 * 359.81584 * 4 3 2 6 6 C 1.38210 * 120.00172 * 0.41628 * 5 4 3 7 7 C 1.50703 * 119.99871 * 179.81073 * 6 5 4 8 8 N 1.46899 * 109.47107 * 269.72669 * 7 6 5 9 9 C 1.48534 * 110.99830 * 52.60468 * 8 7 6 10 10 C 1.54939 * 103.22817 * 159.71871 * 9 8 7 11 11 C 1.54596 * 102.92012 * 322.58829 * 10 9 8 12 12 H 1.09001 * 110.39035 * 262.99147 * 11 10 9 13 13 N 1.46904 * 110.31094 * 140.87210 * 11 10 9 14 14 C 1.46899 * 110.99837 * 89.28045 * 13 11 10 15 15 H 1.08999 * 109.47552 * 324.99704 * 14 13 11 16 16 C 1.52998 * 109.47137 * 85.00623 * 14 13 11 17 17 C 1.53007 * 109.46905 * 205.00092 * 14 13 11 18 18 C 1.53007 * 109.46927 * 65.00298 * 17 14 13 19 19 C 1.50703 * 109.46700 * 179.97438 * 18 17 14 20 20 H 1.07998 * 120.00302 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99698 * 179.97438 * 19 18 17 22 22 N 1.31516 * 119.99955 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00040 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47173 * 89.99977 * 23 21 19 25 25 H 1.48501 * 109.47022 * 210.00324 * 23 21 19 26 26 H 1.48504 * 109.46765 * 329.99993 * 23 21 19 27 27 C 1.47901 * 111.00170 * 169.99808 * 8 7 6 28 28 C 1.38210 * 119.99948 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.46908 * 270.01509 * 1 2 3 30 30 H 1.08998 * 109.47536 * 30.02046 * 1 2 3 31 31 H 1.09009 * 109.46935 * 150.02159 * 1 2 3 32 32 H 1.08003 * 119.99991 * 0.02562 * 3 2 1 33 33 H 1.08003 * 120.00129 * 180.02562 * 4 3 2 34 34 H 1.08001 * 119.99573 * 180.23312 * 5 4 3 35 35 H 1.09002 * 109.47152 * 149.72756 * 7 6 5 36 36 H 1.09001 * 109.46980 * 29.72856 * 7 6 5 37 37 H 1.08996 * 110.66891 * 278.15580 * 9 8 7 38 38 H 1.09001 * 110.67193 * 41.28416 * 9 8 7 39 39 H 1.08998 * 110.72475 * 204.22657 * 10 9 8 40 40 H 1.09003 * 110.87498 * 81.01220 * 10 9 8 41 41 H 1.00899 * 111.00119 * 213.23775 * 13 11 10 42 42 H 1.09001 * 109.46740 * 299.99602 * 16 14 13 43 43 H 1.08999 * 109.47156 * 59.99330 * 16 14 13 44 44 H 1.09000 * 109.47267 * 179.97438 * 16 14 13 45 45 H 1.08999 * 109.47124 * 184.99913 * 17 14 13 46 46 H 1.09001 * 109.47043 * 305.00561 * 17 14 13 47 47 H 1.08999 * 109.46904 * 299.99750 * 18 17 14 48 48 H 1.08991 * 109.47053 * 60.00106 * 18 17 14 49 49 H 0.96994 * 119.99839 * 179.97438 * 22 21 19 50 50 H 1.08999 * 109.91618 * 333.51273 * 27 8 7 51 51 H 1.08998 * 109.91656 * 94.80222 * 27 8 7 52 52 H 1.07993 * 120.00257 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1975 0.0005 5 6 4.2716 0.0001 0.0049 6 6 3.5806 -1.1969 0.0001 7 6 4.3342 -2.5019 0.0005 8 7 4.5786 -2.9267 -1.3843 9 6 5.2241 -1.8423 -2.1676 10 6 5.8652 -2.5984 -3.3584 11 6 6.3600 -3.9109 -2.7084 12 1 7.4177 -3.8346 -2.4561 13 7 6.1334 -5.0454 -3.6138 14 6 7.2852 -5.2476 -4.5028 15 1 7.7211 -4.2818 -4.7583 16 6 8.3324 -6.1081 -3.7930 17 6 6.8258 -5.9536 -5.7801 18 6 5.8731 -5.0396 -6.5535 19 6 5.4211 -5.7348 -7.8119 20 1 5.7773 -6.7292 -8.0373 21 6 4.5520 -5.1018 -8.6750 22 7 4.1178 -3.8911 -8.4003 23 14 3.9911 -5.9637 -10.2344 24 1 2.7559 -6.7390 -9.9546 25 1 3.7135 -4.9528 -11.2862 26 1 5.0582 -6.8844 -10.7022 27 6 5.5157 -4.0701 -1.4305 28 6 2.1981 -1.1969 0.0005 29 1 -0.3633 0.0003 1.0277 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3633 -0.8903 -0.5135 32 1 1.6581 2.1327 0.0004 33 1 4.1203 2.1328 0.0010 34 1 5.3516 0.0002 0.0091 35 1 3.7453 -3.2614 0.5150 36 1 5.2868 -2.3713 0.5140 37 1 4.4806 -1.1280 -2.5209 38 1 5.9886 -1.3413 -1.5737 39 1 6.7011 -2.0325 -3.7696 40 1 5.1246 -2.8059 -4.1308 41 1 5.9247 -5.8855 -3.0955 42 1 8.6597 -5.6051 -2.8830 43 1 7.8965 -7.0739 -3.5376 44 1 9.1869 -6.2586 -4.4528 45 1 7.6924 -6.1832 -6.4001 46 1 6.3105 -6.8780 -5.5190 47 1 5.0065 -4.8101 -5.9335 48 1 6.3883 -4.1153 -6.8145 49 1 3.5067 -3.4457 -9.0076 50 1 6.1630 -4.0553 -0.5536 51 1 4.9581 -5.0059 -1.4679 52 1 1.6581 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172489440.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:26 Heat of formation + Delta-G solvation = -5.022396 kcal Electronic energy + Delta-G solvation = -26348.598431 eV Core-core repulsion = 22925.012680 eV Total energy + Delta-G solvation = -3423.585751 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.86690 -39.76627 -37.89428 -35.36900 -34.40280 -33.21577 -32.29144 -31.00708 -30.38684 -28.23158 -27.62393 -26.94159 -26.10390 -23.36161 -23.16509 -22.23023 -21.38891 -21.22229 -21.07174 -18.35488 -17.40638 -17.21459 -16.93360 -16.52779 -16.40619 -16.08586 -15.66662 -15.34361 -14.97145 -14.74620 -14.53181 -14.47566 -14.14028 -14.04301 -13.91873 -13.67828 -13.43313 -13.16097 -13.11340 -13.07254 -12.84369 -12.76588 -12.71368 -12.42916 -12.33892 -12.27771 -12.04508 -11.89302 -11.78138 -11.70504 -11.60742 -11.47183 -11.19623 -10.92343 -10.46806 -9.74571 -9.53449 -9.27271 -9.05570 -8.11720 -6.22341 0.42392 0.51522 1.39558 1.41740 1.52210 2.44557 2.74381 3.19887 3.20794 3.29423 3.58704 3.78548 3.91500 3.95734 4.07744 4.09028 4.22733 4.24541 4.29908 4.35430 4.42663 4.47194 4.50525 4.55092 4.61415 4.66551 4.69431 4.78993 4.81292 4.82913 4.86643 4.92685 4.99802 5.01860 5.05399 5.07288 5.16296 5.19637 5.30611 5.31716 5.36838 5.49952 5.57481 5.61059 5.66652 5.73917 5.89945 5.94218 6.06756 6.08844 6.16839 6.36163 6.38162 6.70315 6.98057 7.45544 8.99306 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011776 B = 0.002875 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.190137 B = 9736.962606 C =11434.895480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.100 4.100 3 C -0.132 4.132 4 C -0.124 4.124 5 C -0.128 4.128 6 C -0.088 4.088 7 C 0.089 3.911 8 N -0.523 5.523 9 C 0.055 3.945 10 C -0.117 4.117 11 C 0.086 3.914 12 H 0.061 0.939 13 N -0.682 5.682 14 C 0.092 3.908 15 H 0.056 0.944 16 C -0.167 4.167 17 C -0.089 4.089 18 C 0.043 3.957 19 C -0.543 4.543 20 H 0.055 0.945 21 C -0.002 4.002 22 N -0.932 5.932 23 Si 0.960 3.040 24 H -0.274 1.274 25 H -0.282 1.282 26 H -0.263 1.263 27 C 0.044 3.956 28 C -0.117 4.117 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.128 0.872 35 H 0.088 0.912 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.047 0.953 41 H 0.344 0.656 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.048 0.952 46 H 0.047 0.953 47 H 0.002 0.998 48 H -0.027 1.027 49 H 0.260 0.740 50 H 0.068 0.932 51 H 0.082 0.918 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.404 6.944 23.484 24.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.100 4.100 3 C -0.150 4.150 4 C -0.142 4.142 5 C -0.146 4.146 6 C -0.088 4.088 7 C -0.038 4.038 8 N -0.247 5.247 9 C -0.073 4.073 10 C -0.156 4.156 11 C -0.024 4.024 12 H 0.078 0.922 13 N -0.314 5.314 14 C -0.017 4.017 15 H 0.074 0.926 16 C -0.226 4.226 17 C -0.127 4.127 18 C 0.006 3.994 19 C -0.581 4.581 20 H 0.073 0.927 21 C -0.199 4.199 22 N -0.572 5.572 23 Si 0.785 3.215 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.188 1.188 27 C -0.084 4.084 28 C -0.136 4.136 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.155 0.845 33 H 0.158 0.842 34 H 0.146 0.854 35 H 0.107 0.893 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.066 0.934 41 H 0.164 0.836 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.021 0.979 48 H -0.008 1.008 49 H 0.069 0.931 50 H 0.086 0.914 51 H 0.101 0.899 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.444 7.276 22.762 23.901 hybrid contribution 0.865 -0.286 -0.328 0.969 sum 1.309 6.990 22.433 23.534 Atomic orbital electron populations 1.20822 0.89930 1.03216 1.03019 1.20244 0.97312 0.93174 0.99296 1.21321 0.94625 0.98074 1.00941 1.21388 0.94593 0.98546 0.99669 1.21228 1.00216 0.92163 1.01035 1.19853 0.94040 0.94821 1.00104 1.21265 0.99058 0.94101 0.89406 1.64819 1.42747 1.05713 1.11459 1.23043 0.96673 0.93774 0.93821 1.22530 0.99764 0.95748 0.97581 1.22307 0.97473 0.91430 0.91192 0.92156 1.60494 1.39889 1.07977 1.23073 1.21511 0.89383 0.98012 0.92829 0.92590 1.22387 0.99356 1.00239 1.00651 1.21463 0.98121 0.98229 0.94874 1.18770 0.94202 0.93200 0.93210 1.21827 1.27009 1.01971 1.07312 0.92711 1.25964 0.96531 0.95638 1.01812 1.70134 1.33965 1.14545 1.38566 0.85524 0.78828 0.78289 0.78838 1.19914 1.20797 1.18773 1.23031 0.93622 0.95469 0.96232 1.21079 0.93840 0.98086 1.00562 0.90034 0.90758 0.91710 0.84488 0.84240 0.85424 0.89326 0.92584 0.91837 0.92203 0.91771 0.93429 0.83588 0.91789 0.91822 0.91855 0.93378 0.93434 0.97936 1.00825 0.93136 0.91417 0.89940 0.86058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.76 10.01 71.24 0.71 -1.04 16 2 C -0.10 -2.03 5.88 -19.86 -0.12 -2.14 16 3 C -0.13 -2.45 9.70 22.27 0.22 -2.23 16 4 C -0.12 -2.28 10.05 22.27 0.22 -2.05 16 5 C -0.13 -2.52 8.36 22.27 0.19 -2.34 16 6 C -0.09 -1.90 4.59 -19.87 -0.09 -1.99 16 7 C 0.09 1.80 5.19 85.56 0.44 2.24 16 8 N -0.52 -13.36 5.39 -887.58 -4.78 -18.14 16 9 C 0.05 1.46 4.97 86.65 0.43 1.89 16 10 C -0.12 -3.78 6.73 31.80 0.21 -3.57 16 11 C 0.09 2.36 3.08 45.79 0.14 2.50 16 12 H 0.06 1.46 7.19 -2.39 -0.02 1.45 16 13 N -0.68 -22.10 5.49 -464.98 -2.55 -24.66 16 14 C 0.09 3.09 2.44 44.92 0.11 3.20 16 15 H 0.06 2.02 7.83 -2.39 -0.02 2.01 16 16 C -0.17 -4.11 9.15 71.98 0.66 -3.45 16 17 C -0.09 -3.77 4.83 30.60 0.15 -3.63 16 18 C 0.04 2.41 4.86 29.85 0.15 2.56 16 19 C -0.54 -32.56 9.11 25.60 0.23 -32.33 16 20 H 0.05 3.15 7.74 -2.91 -0.02 3.13 16 21 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 22 N -0.93 -59.63 13.29 21.45 0.28 -59.34 16 23 Si 0.96 46.31 29.54 68.60 2.03 48.34 16 24 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 25 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 26 H -0.26 -12.08 7.11 99.48 0.71 -11.38 16 27 C 0.04 1.02 6.40 86.44 0.55 1.57 16 28 C -0.12 -2.61 9.36 22.27 0.21 -2.40 16 29 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.07 1.01 8.09 -2.39 -0.02 0.99 16 31 H 0.06 1.04 8.09 -2.38 -0.02 1.02 16 32 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 33 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 34 H 0.13 2.14 7.41 -2.91 -0.02 2.11 16 35 H 0.09 1.66 8.09 -2.39 -0.02 1.64 16 36 H 0.06 0.96 7.75 -2.39 -0.02 0.94 16 37 H 0.06 1.91 7.74 -2.39 -0.02 1.89 16 38 H 0.06 1.33 7.11 -2.39 -0.02 1.31 16 39 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.05 2.02 8.06 -2.39 -0.02 2.00 16 41 H 0.34 9.80 7.76 -89.69 -0.70 9.11 16 42 H 0.06 1.32 7.48 -2.39 -0.02 1.31 16 43 H 0.06 1.46 8.13 -2.39 -0.02 1.44 16 44 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 46 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 47 H 0.00 0.14 7.75 -2.39 -0.02 0.12 16 48 H -0.03 -1.63 8.14 -2.39 -0.02 -1.65 16 49 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 50 H 0.07 1.21 7.57 -2.39 -0.02 1.19 16 51 H 0.08 1.96 7.47 -2.39 -0.02 1.94 16 52 H 0.12 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -71.11 407.76 0.02 -71.09 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: 0.17 Total: 25.59 kcal Atomic # 6 Polarization: -47.75 SS G_CDS: 4.88 Total: -42.87 kcal Atomic # 7 Polarization: -95.09 SS G_CDS: -7.05 Total: -102.14 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -71.11 0.02 -71.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172489440.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.068 kcal (2) G-P(sol) polarization free energy of solvation -71.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds