Wall clock time and date at job start Tue Mar 31 2020 12:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38257 * 119.99972 * 2 1 4 4 C 1.38214 * 119.99828 * 179.97438 * 3 2 1 5 5 C 1.38252 * 120.00086 * 0.02808 * 4 3 2 6 6 C 1.38210 * 120.00003 * 359.69767 * 5 4 3 7 7 C 1.38215 * 119.99997 * 179.97438 * 2 1 3 8 8 C 1.50701 * 119.99842 * 359.97438 * 7 2 1 9 9 N 1.46901 * 109.46921 * 80.00158 * 8 7 2 10 10 C 1.48534 * 111.00172 * 52.60615 * 9 8 7 11 11 C 1.54933 * 103.22824 * 159.71827 * 10 9 8 12 12 C 1.54594 * 102.92252 * 322.58255 * 11 10 9 13 13 H 1.08997 * 110.31096 * 263.04565 * 12 11 10 14 14 N 1.46897 * 110.30821 * 140.87290 * 12 11 10 15 15 C 1.46905 * 111.00104 * 89.28677 * 14 12 11 16 16 H 1.09000 * 109.47041 * 34.99460 * 15 14 12 17 17 C 1.53003 * 109.46981 * 275.00196 * 15 14 12 18 18 C 1.52991 * 109.47305 * 155.00044 * 15 14 12 19 19 C 1.53004 * 109.47359 * 294.99814 * 18 15 14 20 20 C 1.50699 * 109.47410 * 180.02562 * 19 18 15 21 21 H 1.08000 * 119.99680 * 359.97438 * 20 19 18 22 22 C 1.37874 * 119.99788 * 180.02562 * 20 19 18 23 23 N 1.31511 * 120.00249 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99679 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.47001 * 90.00004 * 24 22 20 26 26 H 1.48500 * 109.47077 * 209.99925 * 24 22 20 27 27 H 1.48501 * 109.47010 * 329.99987 * 24 22 20 28 28 C 1.47912 * 110.99681 * 169.99814 * 9 8 7 29 29 H 1.09003 * 109.46832 * 270.01801 * 1 2 3 30 30 H 1.08993 * 109.47286 * 30.01591 * 1 2 3 31 31 H 1.08992 * 109.47075 * 150.01857 * 1 2 3 32 32 H 1.07999 * 119.99807 * 0.02562 * 3 2 1 33 33 H 1.07997 * 119.99713 * 179.97438 * 4 3 2 34 34 H 1.08005 * 120.00236 * 179.97438 * 5 4 3 35 35 H 1.08003 * 120.00334 * 180.30201 * 6 5 4 36 36 H 1.09002 * 109.47060 * 200.00339 * 8 7 2 37 37 H 1.09001 * 109.47380 * 320.00427 * 8 7 2 38 38 H 1.08997 * 110.66294 * 278.15766 * 10 9 8 39 39 H 1.09001 * 110.66815 * 41.27720 * 10 9 8 40 40 H 1.09002 * 110.72385 * 204.22928 * 11 10 9 41 41 H 1.09000 * 110.87522 * 81.01746 * 11 10 9 42 42 H 1.00901 * 111.00148 * 325.33378 * 14 12 11 43 43 H 1.08999 * 109.47157 * 299.99500 * 17 15 14 44 44 H 1.09000 * 109.47210 * 59.99501 * 17 15 14 45 45 H 1.08999 * 109.47348 * 179.97438 * 17 15 14 46 46 H 1.09000 * 109.47564 * 55.00309 * 18 15 14 47 47 H 1.09001 * 109.47165 * 175.00277 * 18 15 14 48 48 H 1.09001 * 109.46665 * 300.00699 * 19 18 15 49 49 H 1.09001 * 109.46603 * 60.00119 * 19 18 15 50 50 H 0.97003 * 119.99962 * 180.02562 * 23 22 20 51 51 H 1.08997 * 109.91505 * 333.51116 * 28 9 8 52 52 H 1.08996 * 109.91557 * 94.80856 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5807 -1.1969 0.0062 7 6 2.1981 -1.1970 0.0005 8 6 1.4446 -2.5021 0.0017 9 7 0.9910 -2.8068 -1.3619 10 6 2.1208 -2.7480 -2.3243 11 6 1.6053 -3.5773 -3.5273 12 6 0.8165 -4.7197 -2.8470 13 1 1.4382 -5.6111 -2.7634 14 7 -0.4051 -5.0182 -3.6062 15 6 -0.1498 -6.0336 -4.6366 16 1 0.5839 -6.7499 -4.2669 17 6 0.3897 -5.3559 -5.8978 18 6 -1.4531 -6.7633 -4.9675 19 6 -1.9271 -7.5432 -3.7395 20 6 -3.2105 -8.2625 -4.0656 21 1 -3.6450 -8.1721 -5.0503 22 6 -3.8306 -9.0352 -3.1068 23 7 -3.3023 -9.1440 -1.9074 24 14 -5.4219 -9.9262 -3.5109 25 1 -5.1113 -11.2773 -4.0429 26 1 -6.2431 -10.0555 -2.2804 27 1 -6.1763 -9.1540 -4.5306 28 6 0.4591 -4.1842 -1.4481 29 1 -0.3633 0.0003 1.0277 30 1 -0.3633 0.8898 -0.5140 31 1 -0.3633 -0.8901 -0.5135 32 1 1.6583 2.1326 0.0004 33 1 4.1204 2.1326 0.0001 34 1 5.3518 -0.0001 0.0005 35 1 4.1206 -2.1323 0.0111 36 1 2.0993 -3.2993 0.3535 37 1 0.5813 -2.4227 0.6625 38 1 2.3185 -1.7186 -2.6231 39 1 3.0141 -3.2040 -1.8973 40 1 2.4383 -3.9755 -4.1066 41 1 0.9493 -2.9785 -4.1591 42 1 -0.7921 -4.1797 -4.0128 43 1 -0.3440 -4.6396 -6.2676 44 1 1.3182 -4.8360 -5.6620 45 1 0.5796 -6.1093 -6.6622 46 1 -2.2141 -6.0368 -5.2525 47 1 -1.2831 -7.4542 -5.7933 48 1 -1.1660 -8.2697 -3.4546 49 1 -2.0971 -6.8523 -2.9137 50 1 -3.7384 -9.6880 -1.2329 51 1 0.9196 -4.8087 -0.6826 52 1 -0.6233 -4.1730 -1.3203 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172489623.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:30 Heat of formation + Delta-G solvation = 14.528719 kcal Electronic energy + Delta-G solvation = -26484.861061 eV Core-core repulsion = 23062.123110 eV Total energy + Delta-G solvation = -3422.737951 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.14615 -38.84720 -36.56299 -33.78667 -32.95650 -32.37752 -30.90474 -29.71865 -29.09505 -27.39781 -26.67415 -25.36113 -24.73282 -22.20305 -21.69247 -21.32374 -20.52621 -20.27596 -19.67188 -16.66713 -16.25801 -16.10281 -15.93474 -15.59325 -15.18452 -14.60143 -14.33140 -14.28736 -13.84839 -13.57381 -13.40926 -13.26924 -13.15337 -12.86635 -12.48461 -12.38214 -12.30877 -12.14843 -12.04405 -11.97092 -11.66505 -11.52516 -11.51796 -11.12605 -11.08459 -11.01136 -10.87358 -10.74601 -10.70900 -10.40259 -10.06029 -9.59718 -9.16777 -9.02408 -8.86424 -8.78781 -8.37968 -8.20785 -7.83634 -5.86103 -3.86907 1.14233 1.20517 3.38654 3.44733 3.48355 3.49995 4.09440 4.40743 4.56237 4.60970 4.63933 4.72028 4.78177 4.82853 4.88270 5.09194 5.19507 5.22146 5.34367 5.42014 5.44469 5.49393 5.50905 5.54575 5.57457 5.59453 5.60292 5.69308 5.72842 5.75201 5.87486 5.89009 5.97871 6.07159 6.12205 6.15184 6.27263 6.30485 6.31250 6.32393 6.46658 6.52425 6.72271 6.81703 6.88339 6.93834 6.99813 7.35338 7.59049 7.86953 7.88389 8.11279 8.26506 8.60804 9.22205 9.75543 11.24957 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019545 B = 0.002438 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.272341 B =11481.903082 C =12253.199639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.060 4.060 3 C -0.125 4.125 4 C -0.119 4.119 5 C -0.130 4.130 6 C -0.111 4.111 7 C -0.081 4.081 8 C 0.083 3.917 9 N -0.508 5.508 10 C 0.041 3.959 11 C -0.152 4.152 12 C 0.084 3.916 13 H 0.080 0.920 14 N -0.660 5.660 15 C 0.085 3.915 16 H 0.069 0.931 17 C -0.182 4.182 18 C -0.099 4.099 19 C 0.030 3.970 20 C -0.517 4.517 21 H 0.050 0.950 22 C 0.056 3.944 23 N -0.895 5.895 24 Si 0.886 3.114 25 H -0.283 1.283 26 H -0.288 1.288 27 H -0.275 1.275 28 C 0.042 3.958 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.042 0.958 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.041 0.959 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.339 0.661 43 H 0.052 0.948 44 H 0.047 0.953 45 H 0.056 0.944 46 H 0.046 0.954 47 H 0.045 0.955 48 H 0.005 0.995 49 H 0.033 0.967 50 H 0.257 0.743 51 H 0.046 0.954 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.817 20.164 2.910 25.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.060 4.060 3 C -0.144 4.144 4 C -0.137 4.137 5 C -0.148 4.148 6 C -0.129 4.129 7 C -0.081 4.081 8 C -0.044 4.044 9 N -0.232 5.232 10 C -0.087 4.087 11 C -0.192 4.192 12 C -0.027 4.027 13 H 0.098 0.902 14 N -0.290 5.290 15 C -0.025 4.025 16 H 0.088 0.912 17 C -0.241 4.241 18 C -0.137 4.137 19 C -0.007 4.007 20 C -0.556 4.556 21 H 0.069 0.931 22 C -0.145 4.145 23 N -0.535 5.535 24 Si 0.715 3.285 25 H -0.209 1.209 26 H -0.213 1.213 27 H -0.200 1.200 28 C -0.086 4.086 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.108 0.892 32 H 0.138 0.862 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.061 0.939 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.059 0.941 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.159 0.841 43 H 0.071 0.929 44 H 0.066 0.934 45 H 0.075 0.925 46 H 0.065 0.935 47 H 0.063 0.937 48 H 0.024 0.976 49 H 0.051 0.949 50 H 0.067 0.933 51 H 0.064 0.936 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 15.109 19.977 3.427 25.281 hybrid contribution 0.437 -0.576 -0.566 0.918 sum 15.546 19.402 2.861 25.026 Atomic orbital electron populations 1.20919 0.90840 1.04087 1.02140 1.19811 0.96423 0.92188 0.97600 1.21059 0.94224 0.97557 1.01512 1.21104 0.94364 0.97909 1.00357 1.21055 0.99655 0.92525 1.01560 1.21055 0.93624 0.98042 1.00196 1.19671 0.93240 0.94549 1.00660 1.21242 0.98426 0.93048 0.91695 1.64928 1.28142 1.25709 1.04430 1.23117 0.92581 1.00156 0.92839 1.23358 1.00482 0.97853 0.97477 1.22411 0.90725 0.96360 0.93223 0.90217 1.60539 1.26147 1.14025 1.28299 1.21778 0.98780 0.93181 0.88718 0.91241 1.22637 1.00474 1.01057 0.99958 1.21632 0.93779 0.97848 1.00433 1.18987 0.94742 0.94249 0.92698 1.21359 1.08232 1.28333 0.97640 0.93148 1.24995 0.97395 0.96920 0.95152 1.69977 1.39621 1.40370 1.03538 0.86689 0.84060 0.80095 0.77683 1.20896 1.21345 1.20015 1.23019 1.02499 0.86932 0.96169 0.91566 0.91957 0.89181 0.86249 0.86387 0.86373 0.86497 0.93942 0.89505 0.90599 0.94092 0.91488 0.90716 0.84123 0.92864 0.93420 0.92535 0.93488 0.93651 0.97624 0.94880 0.93293 0.93584 0.88354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 9.26 36.01 0.33 -0.81 16 2 C -0.06 -0.60 5.88 -104.62 -0.62 -1.21 16 3 C -0.13 -1.14 9.70 -39.58 -0.38 -1.53 16 4 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 5 C -0.13 -1.12 10.05 -39.59 -0.40 -1.52 16 6 C -0.11 -1.04 8.99 -39.59 -0.36 -1.40 16 7 C -0.08 -0.83 4.30 -104.62 -0.45 -1.28 16 8 C 0.08 0.88 4.29 -4.97 -0.02 0.86 16 9 N -0.51 -5.88 4.73 -231.88 -1.10 -6.97 16 10 C 0.04 0.45 5.23 -1.90 -0.01 0.44 16 11 C -0.15 -1.70 5.21 -24.87 -0.13 -1.83 16 12 C 0.08 1.13 3.30 -66.36 -0.22 0.92 16 13 H 0.08 1.13 7.44 -51.93 -0.39 0.74 16 14 N -0.66 -10.39 5.44 -98.32 -0.53 -10.93 16 15 C 0.09 1.41 2.59 -67.71 -0.18 1.23 16 16 H 0.07 1.21 7.44 -51.93 -0.39 0.82 16 17 C -0.18 -2.44 8.97 37.16 0.33 -2.10 16 18 C -0.10 -2.05 4.83 -26.73 -0.13 -2.18 16 19 C 0.03 0.80 4.86 -27.88 -0.14 0.66 16 20 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 21 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 22 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 23 N -0.90 -27.53 13.29 55.43 0.74 -26.80 16 24 Si 0.89 22.19 29.54 -169.99 -5.02 17.16 16 25 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 28 C 0.04 0.55 6.50 -2.75 -0.02 0.54 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 31 H 0.09 0.95 6.35 -51.93 -0.33 0.62 16 32 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 35 H 0.12 0.98 8.04 -52.48 -0.42 0.56 16 36 H 0.04 0.44 7.67 -51.93 -0.40 0.04 16 37 H 0.09 0.91 7.28 -51.93 -0.38 0.53 16 38 H 0.08 0.85 7.90 -51.93 -0.41 0.44 16 39 H 0.04 0.43 7.83 -51.93 -0.41 0.02 16 40 H 0.07 0.70 7.53 -51.93 -0.39 0.31 16 41 H 0.07 0.86 7.56 -51.93 -0.39 0.47 16 42 H 0.34 5.03 7.84 -39.29 -0.31 4.72 16 43 H 0.05 0.69 8.13 -51.93 -0.42 0.27 16 44 H 0.05 0.57 6.13 -51.93 -0.32 0.25 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 47 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 48 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 49 H 0.03 0.93 7.75 -51.93 -0.40 0.53 16 50 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 51 H 0.05 0.61 7.57 -51.93 -0.39 0.21 16 52 H 0.10 1.50 7.92 -51.93 -0.41 1.09 16 LS Contribution 402.27 15.07 6.06 6.06 Total: -1.00 -30.69 402.27 -12.54 -43.23 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -9.50 Total: 2.66 kcal Atomic # 6 Polarization: -21.23 SS G_CDS: -3.18 Total: -24.42 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: -0.89 Total: -44.70 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -30.69 -12.54 -43.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172489623.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.756 kcal (2) G-P(sol) polarization free energy of solvation -30.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds