Wall clock time and date at job start Tue Mar 31 2020 12:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38257 * 119.99972 * 2 1 4 4 C 1.38214 * 119.99828 * 179.97438 * 3 2 1 5 5 C 1.38252 * 120.00086 * 0.02808 * 4 3 2 6 6 C 1.38210 * 120.00003 * 359.69767 * 5 4 3 7 7 C 1.38215 * 119.99997 * 179.97438 * 2 1 3 8 8 C 1.50701 * 119.99842 * 359.97438 * 7 2 1 9 9 N 1.46901 * 109.46921 * 80.00158 * 8 7 2 10 10 C 1.48534 * 111.00172 * 52.60615 * 9 8 7 11 11 C 1.54933 * 103.22824 * 159.71827 * 10 9 8 12 12 C 1.54594 * 102.92252 * 322.58255 * 11 10 9 13 13 H 1.08997 * 110.31096 * 263.04565 * 12 11 10 14 14 N 1.46897 * 110.30821 * 140.87290 * 12 11 10 15 15 C 1.46905 * 111.00104 * 89.28677 * 14 12 11 16 16 H 1.09000 * 109.47041 * 34.99460 * 15 14 12 17 17 C 1.53003 * 109.46981 * 275.00196 * 15 14 12 18 18 C 1.52991 * 109.47305 * 155.00044 * 15 14 12 19 19 C 1.53004 * 109.47359 * 294.99814 * 18 15 14 20 20 C 1.50699 * 109.47410 * 180.02562 * 19 18 15 21 21 H 1.08000 * 119.99680 * 359.97438 * 20 19 18 22 22 C 1.37874 * 119.99788 * 180.02562 * 20 19 18 23 23 N 1.31511 * 120.00249 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99679 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.47001 * 90.00004 * 24 22 20 26 26 H 1.48500 * 109.47077 * 209.99925 * 24 22 20 27 27 H 1.48501 * 109.47010 * 329.99987 * 24 22 20 28 28 C 1.47912 * 110.99681 * 169.99814 * 9 8 7 29 29 H 1.09003 * 109.46832 * 270.01801 * 1 2 3 30 30 H 1.08993 * 109.47286 * 30.01591 * 1 2 3 31 31 H 1.08992 * 109.47075 * 150.01857 * 1 2 3 32 32 H 1.07999 * 119.99807 * 0.02562 * 3 2 1 33 33 H 1.07997 * 119.99713 * 179.97438 * 4 3 2 34 34 H 1.08005 * 120.00236 * 179.97438 * 5 4 3 35 35 H 1.08003 * 120.00334 * 180.30201 * 6 5 4 36 36 H 1.09002 * 109.47060 * 200.00339 * 8 7 2 37 37 H 1.09001 * 109.47380 * 320.00427 * 8 7 2 38 38 H 1.08997 * 110.66294 * 278.15766 * 10 9 8 39 39 H 1.09001 * 110.66815 * 41.27720 * 10 9 8 40 40 H 1.09002 * 110.72385 * 204.22928 * 11 10 9 41 41 H 1.09000 * 110.87522 * 81.01746 * 11 10 9 42 42 H 1.00901 * 111.00148 * 325.33378 * 14 12 11 43 43 H 1.08999 * 109.47157 * 299.99500 * 17 15 14 44 44 H 1.09000 * 109.47210 * 59.99501 * 17 15 14 45 45 H 1.08999 * 109.47348 * 179.97438 * 17 15 14 46 46 H 1.09000 * 109.47564 * 55.00309 * 18 15 14 47 47 H 1.09001 * 109.47165 * 175.00277 * 18 15 14 48 48 H 1.09001 * 109.46665 * 300.00699 * 19 18 15 49 49 H 1.09001 * 109.46603 * 60.00119 * 19 18 15 50 50 H 0.97003 * 119.99962 * 180.02562 * 23 22 20 51 51 H 1.08997 * 109.91505 * 333.51116 * 28 9 8 52 52 H 1.08996 * 109.91557 * 94.80856 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5807 -1.1969 0.0062 7 6 2.1981 -1.1970 0.0005 8 6 1.4446 -2.5021 0.0017 9 7 0.9910 -2.8068 -1.3619 10 6 2.1208 -2.7480 -2.3243 11 6 1.6053 -3.5773 -3.5273 12 6 0.8165 -4.7197 -2.8470 13 1 1.4382 -5.6111 -2.7634 14 7 -0.4051 -5.0182 -3.6062 15 6 -0.1498 -6.0336 -4.6366 16 1 0.5839 -6.7499 -4.2669 17 6 0.3897 -5.3559 -5.8978 18 6 -1.4531 -6.7633 -4.9675 19 6 -1.9271 -7.5432 -3.7395 20 6 -3.2105 -8.2625 -4.0656 21 1 -3.6450 -8.1721 -5.0503 22 6 -3.8306 -9.0352 -3.1068 23 7 -3.3023 -9.1440 -1.9074 24 14 -5.4219 -9.9262 -3.5109 25 1 -5.1113 -11.2773 -4.0429 26 1 -6.2431 -10.0555 -2.2804 27 1 -6.1763 -9.1540 -4.5306 28 6 0.4591 -4.1842 -1.4481 29 1 -0.3633 0.0003 1.0277 30 1 -0.3633 0.8898 -0.5140 31 1 -0.3633 -0.8901 -0.5135 32 1 1.6583 2.1326 0.0004 33 1 4.1204 2.1326 0.0001 34 1 5.3518 -0.0001 0.0005 35 1 4.1206 -2.1323 0.0111 36 1 2.0993 -3.2993 0.3535 37 1 0.5813 -2.4227 0.6625 38 1 2.3185 -1.7186 -2.6231 39 1 3.0141 -3.2040 -1.8973 40 1 2.4383 -3.9755 -4.1066 41 1 0.9493 -2.9785 -4.1591 42 1 -0.7921 -4.1797 -4.0128 43 1 -0.3440 -4.6396 -6.2676 44 1 1.3182 -4.8360 -5.6620 45 1 0.5796 -6.1093 -6.6622 46 1 -2.2141 -6.0368 -5.2525 47 1 -1.2831 -7.4542 -5.7933 48 1 -1.1660 -8.2697 -3.4546 49 1 -2.0971 -6.8523 -2.9137 50 1 -3.7384 -9.6880 -1.2329 51 1 0.9196 -4.8087 -0.6826 52 1 -0.6233 -4.1730 -1.3203 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172489623.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:29 Heat of formation + Delta-G solvation = -2.343525 kcal Electronic energy + Delta-G solvation = -26485.592696 eV Core-core repulsion = 23062.123110 eV Total energy + Delta-G solvation = -3423.469586 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.97114 -39.79412 -37.81840 -35.36909 -34.28046 -33.36268 -32.18646 -30.80904 -30.50105 -28.29584 -27.56574 -26.97547 -25.95433 -23.20624 -22.90154 -22.48635 -21.71454 -21.19525 -21.02472 -18.35308 -17.43844 -17.26475 -16.84281 -16.51379 -16.44358 -16.03026 -15.63073 -15.31423 -14.83336 -14.71349 -14.40067 -14.22965 -14.14234 -14.08803 -13.93483 -13.80631 -13.24842 -13.17857 -13.09827 -12.91458 -12.85964 -12.81406 -12.77819 -12.64326 -12.39854 -12.34389 -12.12436 -11.80334 -11.77900 -11.68441 -11.51823 -11.45431 -11.17981 -10.89137 -10.47132 -9.73094 -9.52813 -9.28010 -9.07130 -8.12432 -6.22565 0.44238 0.51967 1.40080 1.41825 1.52717 2.44534 2.76327 3.17978 3.19853 3.30077 3.71073 3.74766 3.90525 3.95837 4.06925 4.12211 4.21966 4.25366 4.34206 4.39239 4.40815 4.46295 4.52502 4.55387 4.64549 4.74035 4.77584 4.80954 4.86212 4.88209 4.90417 4.91684 5.01577 5.04997 5.09008 5.09830 5.18442 5.19328 5.20834 5.32895 5.43002 5.49869 5.58802 5.61139 5.64406 5.79765 5.89960 5.93064 6.05780 6.06490 6.16992 6.35917 6.37970 6.68425 6.97531 7.45333 8.98774 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019545 B = 0.002438 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.272341 B =11481.903082 C =12253.199639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.075 4.075 3 C -0.133 4.133 4 C -0.121 4.121 5 C -0.134 4.134 6 C -0.119 4.119 7 C -0.094 4.094 8 C 0.086 3.914 9 N -0.509 5.509 10 C 0.048 3.952 11 C -0.139 4.139 12 C 0.086 3.914 13 H 0.071 0.929 14 N -0.680 5.680 15 C 0.094 3.906 16 H 0.058 0.942 17 C -0.170 4.170 18 C -0.089 4.089 19 C 0.040 3.960 20 C -0.542 4.542 21 H 0.054 0.946 22 C -0.002 4.002 23 N -0.933 5.933 24 Si 0.960 3.040 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.264 1.264 28 C 0.047 3.953 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.134 0.866 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.124 0.876 36 H 0.042 0.958 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.047 0.953 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.345 0.655 43 H 0.059 0.941 44 H 0.067 0.933 45 H 0.061 0.939 46 H 0.046 0.954 47 H 0.048 0.952 48 H -0.025 1.025 49 H 0.005 0.995 50 H 0.260 0.740 51 H 0.041 0.959 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.640 21.536 1.747 27.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.076 4.076 3 C -0.151 4.151 4 C -0.139 4.139 5 C -0.152 4.152 6 C -0.137 4.137 7 C -0.094 4.094 8 C -0.041 4.041 9 N -0.233 5.233 10 C -0.080 4.080 11 C -0.179 4.179 12 C -0.025 4.025 13 H 0.089 0.911 14 N -0.311 5.311 15 C -0.016 4.016 16 H 0.076 0.924 17 C -0.229 4.229 18 C -0.127 4.127 19 C 0.003 3.997 20 C -0.580 4.580 21 H 0.073 0.927 22 C -0.199 4.199 23 N -0.573 5.573 24 Si 0.785 3.215 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.189 1.189 28 C -0.082 4.082 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.152 0.848 33 H 0.159 0.841 34 H 0.156 0.844 35 H 0.142 0.858 36 H 0.061 0.939 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.065 0.935 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.165 0.835 43 H 0.078 0.922 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.065 0.935 47 H 0.066 0.934 48 H -0.007 1.007 49 H 0.023 0.977 50 H 0.069 0.931 51 H 0.060 0.940 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 15.943 21.364 2.251 26.752 hybrid contribution 0.202 -0.976 -0.130 1.005 sum 16.144 20.388 2.121 26.092 Atomic orbital electron populations 1.20864 0.90788 1.03604 1.02314 1.19969 0.96700 0.92661 0.98245 1.21303 0.94820 0.97769 1.01220 1.21430 0.94282 0.98902 0.99312 1.21348 1.00801 0.92220 1.00799 1.21208 0.93354 0.98900 1.00262 1.19660 0.93703 0.94159 1.01872 1.21196 0.98302 0.93648 0.90946 1.64884 1.28927 1.24166 1.05347 1.23072 0.92358 1.00190 0.92348 1.23248 1.00453 0.96684 0.97503 1.22355 0.90036 0.96960 0.93138 0.91085 1.60412 1.27879 1.14287 1.28515 1.21531 0.96125 0.93269 0.90665 0.92389 1.22481 1.01338 1.01103 0.97943 1.21469 0.95976 0.97571 0.97712 1.18808 0.93328 0.93286 0.94277 1.21822 1.09361 1.28848 0.97952 0.92734 1.25951 1.01294 0.97785 0.94911 1.70120 1.41402 1.41163 1.04646 0.85524 0.79286 0.78923 0.77751 1.19859 1.20834 1.18874 1.22854 1.00995 0.88085 0.96242 0.91117 0.91111 0.90891 0.84763 0.84131 0.84364 0.85840 0.93940 0.90108 0.90386 0.93491 0.90021 0.90542 0.83538 0.92159 0.91409 0.92018 0.93524 0.93366 1.00679 0.97688 0.93080 0.94036 0.90910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.18 9.26 71.24 0.66 -1.52 16 2 C -0.08 -1.46 5.88 -19.86 -0.12 -1.57 16 3 C -0.13 -2.20 9.70 22.27 0.22 -1.99 16 4 C -0.12 -1.78 10.05 22.27 0.22 -1.55 16 5 C -0.13 -2.03 10.05 22.27 0.22 -1.80 16 6 C -0.12 -2.09 8.99 22.27 0.20 -1.89 16 7 C -0.09 -1.86 4.30 -19.87 -0.09 -1.95 16 8 C 0.09 1.86 4.29 85.56 0.37 2.23 16 9 N -0.51 -11.87 4.73 -887.55 -4.20 -16.07 16 10 C 0.05 0.99 5.23 86.65 0.45 1.44 16 11 C -0.14 -2.90 5.21 31.80 0.17 -2.74 16 12 C 0.09 2.33 3.30 45.79 0.15 2.48 16 13 H 0.07 2.04 7.44 -2.39 -0.02 2.02 16 14 N -0.68 -21.73 5.44 -464.99 -2.53 -24.25 16 15 C 0.09 3.09 2.59 44.91 0.12 3.21 16 16 H 0.06 2.04 7.44 -2.39 -0.02 2.02 16 17 C -0.17 -4.19 8.97 71.98 0.65 -3.54 16 18 C -0.09 -3.74 4.83 30.59 0.15 -3.59 16 19 C 0.04 2.20 4.86 29.85 0.15 2.34 16 20 C -0.54 -32.07 9.11 25.60 0.23 -31.84 16 21 H 0.05 3.10 7.74 -2.91 -0.02 3.08 16 22 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 23 N -0.93 -58.79 13.29 21.45 0.28 -58.50 16 24 Si 0.96 45.78 29.54 68.60 2.03 47.81 16 25 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 26 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 27 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 28 C 0.05 1.29 6.50 86.44 0.56 1.86 16 29 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.07 1.13 8.09 -2.39 -0.02 1.11 16 31 H 0.07 1.58 6.35 -2.39 -0.02 1.57 16 32 H 0.13 1.73 8.06 -2.91 -0.02 1.70 16 33 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 34 H 0.14 1.48 8.06 -2.91 -0.02 1.45 16 35 H 0.12 1.93 8.04 -2.91 -0.02 1.90 16 36 H 0.04 0.90 7.67 -2.39 -0.02 0.88 16 37 H 0.08 1.79 7.28 -2.39 -0.02 1.77 16 38 H 0.08 1.61 7.90 -2.39 -0.02 1.60 16 39 H 0.05 0.92 7.83 -2.39 -0.02 0.90 16 40 H 0.08 1.49 7.53 -2.39 -0.02 1.48 16 41 H 0.08 1.61 7.56 -2.39 -0.02 1.59 16 42 H 0.34 10.16 7.84 -89.69 -0.70 9.46 16 43 H 0.06 1.42 8.13 -2.39 -0.02 1.40 16 44 H 0.07 1.42 6.13 -2.39 -0.01 1.40 16 45 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 47 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 48 H -0.03 -1.51 8.14 -2.39 -0.02 -1.53 16 49 H 0.00 0.28 7.75 -2.39 -0.02 0.26 16 50 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 51 H 0.04 1.16 7.57 -2.39 -0.02 1.14 16 52 H 0.07 2.39 7.92 -2.39 -0.02 2.37 16 Total: -1.00 -67.23 402.27 0.52 -66.71 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: 0.17 Total: 24.41 kcal Atomic # 6 Polarization: -44.87 SS G_CDS: 4.77 Total: -40.10 kcal Atomic # 7 Polarization: -92.39 SS G_CDS: -6.44 Total: -98.83 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -67.23 0.52 -66.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172489623.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.366 kcal (2) G-P(sol) polarization free energy of solvation -67.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds