Wall clock time and date at job start Tue Mar 31 2020 12:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38257 * 119.99972 * 2 1 4 4 C 1.38214 * 119.99828 * 179.97438 * 3 2 1 5 5 C 1.38252 * 120.00086 * 0.02808 * 4 3 2 6 6 C 1.38210 * 120.00003 * 359.69767 * 5 4 3 7 7 C 1.38215 * 119.99997 * 179.97438 * 2 1 3 8 8 C 1.50701 * 119.99842 * 359.97438 * 7 2 1 9 9 N 1.46901 * 109.46921 * 80.00158 * 8 7 2 10 10 C 1.48534 * 111.00172 * 52.60615 * 9 8 7 11 11 C 1.54933 * 103.22824 * 159.71827 * 10 9 8 12 12 C 1.54594 * 102.92252 * 322.58255 * 11 10 9 13 13 H 1.09002 * 110.39476 * 263.00093 * 12 11 10 14 14 N 1.46897 * 110.30821 * 140.87290 * 12 11 10 15 15 C 1.46905 * 111.00104 * 89.28677 * 14 12 11 16 16 H 1.09007 * 109.46576 * 325.00221 * 15 14 12 17 17 C 1.52997 * 109.47154 * 84.99919 * 15 14 12 18 18 C 1.52999 * 109.47279 * 205.00095 * 15 14 12 19 19 C 1.53004 * 109.47129 * 65.00025 * 18 15 14 20 20 C 1.50699 * 109.47099 * 180.02562 * 19 18 15 21 21 H 1.08005 * 119.99992 * 359.97438 * 20 19 18 22 22 C 1.37872 * 120.00029 * 179.97438 * 20 19 18 23 23 N 1.31511 * 120.00213 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 120.00185 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.46710 * 89.99699 * 24 22 20 26 26 H 1.48501 * 109.47379 * 210.00197 * 24 22 20 27 27 H 1.48506 * 109.46772 * 330.00263 * 24 22 20 28 28 C 1.47912 * 110.99681 * 169.99814 * 9 8 7 29 29 H 1.09003 * 109.46832 * 270.01801 * 1 2 3 30 30 H 1.08993 * 109.47286 * 30.01591 * 1 2 3 31 31 H 1.08992 * 109.47075 * 150.01857 * 1 2 3 32 32 H 1.07999 * 119.99807 * 0.02562 * 3 2 1 33 33 H 1.07997 * 119.99713 * 179.97438 * 4 3 2 34 34 H 1.08005 * 120.00236 * 179.97438 * 5 4 3 35 35 H 1.08003 * 120.00334 * 180.30201 * 6 5 4 36 36 H 1.09002 * 109.47060 * 200.00339 * 8 7 2 37 37 H 1.09001 * 109.47380 * 320.00427 * 8 7 2 38 38 H 1.08997 * 110.66294 * 278.15766 * 10 9 8 39 39 H 1.09001 * 110.66815 * 41.27720 * 10 9 8 40 40 H 1.09000 * 110.71879 * 204.22811 * 11 10 9 41 41 H 1.09000 * 110.87522 * 81.01746 * 11 10 9 42 42 H 1.00901 * 111.00148 * 325.33378 * 14 12 11 43 43 H 1.09003 * 109.47185 * 180.02562 * 17 15 14 44 44 H 1.09004 * 109.47139 * 300.00103 * 17 15 14 45 45 H 1.08991 * 109.47315 * 60.00264 * 17 15 14 46 46 H 1.09000 * 109.47261 * 184.99516 * 18 15 14 47 47 H 1.08996 * 109.47160 * 304.99602 * 18 15 14 48 48 H 1.09000 * 109.46633 * 299.99875 * 19 18 15 49 49 H 1.08996 * 109.47446 * 59.99751 * 19 18 15 50 50 H 0.96999 * 120.00204 * 179.97438 * 23 22 20 51 51 H 1.08997 * 109.91505 * 333.51116 * 28 9 8 52 52 H 1.08996 * 109.91557 * 94.80856 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5807 -1.1969 0.0062 7 6 2.1981 -1.1970 0.0005 8 6 1.4446 -2.5021 0.0017 9 7 0.9910 -2.8068 -1.3619 10 6 2.1208 -2.7480 -2.3243 11 6 1.6053 -3.5773 -3.5273 12 6 0.8165 -4.7197 -2.8470 13 1 1.4368 -5.6121 -2.7634 14 7 -0.4051 -5.0182 -3.6062 15 6 -0.1498 -6.0336 -4.6366 16 1 0.8551 -5.8998 -5.0373 17 6 -0.2712 -7.4283 -4.0194 18 6 -1.1728 -5.8842 -5.7644 19 6 -0.9688 -4.5384 -6.4631 20 6 -1.9768 -4.3909 -7.5736 21 1 -2.6912 -5.1786 -7.7625 22 6 -1.9870 -3.2506 -8.3485 23 7 -2.8663 -3.1221 -9.3179 24 14 -0.7518 -1.8879 -8.0214 25 1 0.4724 -2.1257 -8.8276 26 1 -1.3462 -0.5801 -8.3976 27 1 -0.3996 -1.8749 -6.5787 28 6 0.4591 -4.1842 -1.4481 29 1 -0.3633 0.0003 1.0277 30 1 -0.3633 0.8898 -0.5140 31 1 -0.3633 -0.8901 -0.5135 32 1 1.6583 2.1326 0.0004 33 1 4.1204 2.1326 0.0001 34 1 5.3518 -0.0001 0.0005 35 1 4.1206 -2.1323 0.0111 36 1 2.0993 -3.2993 0.3535 37 1 0.5813 -2.4227 0.6625 38 1 2.3185 -1.7186 -2.6231 39 1 3.0141 -3.2040 -1.8973 40 1 2.4384 -3.9754 -4.1065 41 1 0.9493 -2.9785 -4.1591 42 1 -0.7921 -4.1797 -4.0128 43 1 -0.0813 -8.1817 -4.7839 44 1 0.4576 -7.5347 -3.2159 45 1 -1.2759 -7.5620 -3.6186 46 1 -1.0399 -6.6913 -6.4849 47 1 -2.1798 -5.9294 -5.3499 48 1 -1.1017 -3.7312 -5.7427 49 1 0.0383 -4.4931 -6.8776 50 1 -2.8737 -2.3197 -9.8628 51 1 0.9196 -4.8087 -0.6826 52 1 -0.6233 -4.1730 -1.3203 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172489624.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:32 Heat of formation + Delta-G solvation = -1.766777 kcal Electronic energy + Delta-G solvation = -26860.459291 eV Core-core repulsion = 23437.014715 eV Total energy + Delta-G solvation = -3423.444577 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.97029 -39.80038 -37.93787 -35.31578 -34.35112 -33.40887 -32.35180 -31.22431 -30.43388 -28.47611 -27.67027 -27.02605 -25.93233 -22.95412 -22.92538 -22.56128 -21.41547 -21.11934 -21.10971 -18.94560 -17.47984 -17.22051 -16.89107 -16.54037 -16.40286 -16.08999 -15.87530 -15.41135 -14.97968 -14.79828 -14.49238 -14.36709 -14.27340 -14.13959 -13.90987 -13.60590 -13.45224 -13.17870 -13.13979 -12.92694 -12.89450 -12.85792 -12.77875 -12.73496 -12.40769 -12.19729 -12.01270 -11.80929 -11.78708 -11.69344 -11.60991 -11.55109 -11.30305 -11.08687 -10.77621 -9.74061 -9.52855 -9.28197 -9.22294 -8.30901 -6.34219 0.43060 0.50525 1.31583 1.34506 1.45429 2.33104 2.75514 3.04241 3.17829 3.26441 3.69990 3.74908 3.88142 3.95267 4.08423 4.11437 4.15385 4.22002 4.28577 4.37443 4.40077 4.44932 4.49905 4.52837 4.64308 4.72573 4.73347 4.76352 4.83585 4.85175 4.87309 4.89822 4.91110 5.00092 5.03196 5.06022 5.12351 5.15188 5.19343 5.21051 5.41413 5.43708 5.54243 5.56407 5.57766 5.62905 5.66869 5.78081 5.91988 6.08627 6.16635 6.28344 6.31687 6.47380 6.74230 7.30124 8.86167 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012271 B = 0.003387 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.276439 B = 8266.103770 C = 9714.010114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.077 4.077 3 C -0.138 4.138 4 C -0.124 4.124 5 C -0.136 4.136 6 C -0.118 4.118 7 C -0.096 4.096 8 C 0.090 3.910 9 N -0.520 5.520 10 C 0.054 3.946 11 C -0.157 4.157 12 C 0.084 3.916 13 H 0.092 0.908 14 N -0.680 5.680 15 C 0.089 3.911 16 H 0.039 0.961 17 C -0.129 4.129 18 C -0.099 4.099 19 C -0.005 4.005 20 C -0.530 4.530 21 H 0.031 0.969 22 C 0.005 3.995 23 N -0.951 5.951 24 Si 0.948 3.052 25 H -0.268 1.268 26 H -0.285 1.285 27 H -0.247 1.247 28 C 0.051 3.949 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.130 0.870 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.129 0.871 36 H 0.052 0.948 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.075 0.925 41 H 0.052 0.948 42 H 0.340 0.660 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.054 0.946 46 H 0.055 0.945 47 H 0.051 0.949 48 H 0.019 0.981 49 H 0.010 0.990 50 H 0.266 0.734 51 H 0.061 0.939 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.174 3.418 24.607 29.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.078 4.078 3 C -0.156 4.156 4 C -0.142 4.142 5 C -0.154 4.154 6 C -0.136 4.136 7 C -0.096 4.096 8 C -0.037 4.037 9 N -0.245 5.245 10 C -0.074 4.074 11 C -0.197 4.197 12 C -0.027 4.027 13 H 0.110 0.890 14 N -0.313 5.313 15 C -0.021 4.021 16 H 0.057 0.943 17 C -0.187 4.187 18 C -0.137 4.137 19 C -0.043 4.043 20 C -0.568 4.568 21 H 0.049 0.951 22 C -0.191 4.191 23 N -0.592 5.592 24 Si 0.772 3.228 25 H -0.194 1.194 26 H -0.211 1.211 27 H -0.171 1.171 28 C -0.077 4.077 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.148 0.852 33 H 0.156 0.844 34 H 0.156 0.844 35 H 0.147 0.853 36 H 0.070 0.930 37 H 0.106 0.894 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.094 0.906 41 H 0.071 0.929 42 H 0.161 0.839 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.070 0.930 48 H 0.037 0.963 49 H 0.029 0.971 50 H 0.075 0.925 51 H 0.080 0.920 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 15.444 3.421 24.820 29.432 hybrid contribution 1.060 0.746 -1.131 1.720 sum 16.504 4.167 23.689 29.170 Atomic orbital electron populations 1.20863 0.90731 1.03469 1.02465 1.20004 0.96785 0.92782 0.98223 1.21307 0.94887 0.97902 1.01464 1.21422 0.94301 0.98997 0.99527 1.21363 1.00820 0.92333 1.00857 1.21245 0.93415 0.98890 1.00054 1.19751 0.93759 0.94512 1.01596 1.21204 0.98547 0.93369 0.90561 1.64850 1.28866 1.25323 1.05444 1.22970 0.92806 0.99580 0.92059 1.23249 1.00625 0.97874 0.97909 1.22462 0.90094 0.96840 0.93337 0.89008 1.60737 1.27627 1.14808 1.28120 1.21527 0.96739 0.93366 0.90463 0.94309 1.21722 1.02195 0.94324 1.00446 1.21534 0.98702 0.97436 0.96050 1.19494 0.95003 0.95361 0.94431 1.21510 1.16639 1.03234 1.15393 0.95052 1.25989 0.97604 1.01082 0.94454 1.70066 1.38104 1.29381 1.21677 0.85686 0.79026 0.77970 0.80112 1.19370 1.21083 1.17070 1.22880 1.01512 0.87737 0.95576 0.90547 0.91823 0.90679 0.85166 0.84436 0.84389 0.85275 0.92963 0.89422 0.91661 0.92476 0.90648 0.92930 0.83882 0.92197 0.91891 0.92637 0.92660 0.93021 0.96307 0.97122 0.92542 0.92033 0.89984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.22 9.26 71.24 0.66 -1.56 16 2 C -0.08 -1.55 5.88 -19.86 -0.12 -1.67 16 3 C -0.14 -2.53 9.70 22.27 0.22 -2.31 16 4 C -0.12 -2.04 10.05 22.27 0.22 -1.81 16 5 C -0.14 -2.17 10.05 22.27 0.22 -1.94 16 6 C -0.12 -2.01 8.99 22.27 0.20 -1.81 16 7 C -0.10 -1.84 4.30 -19.87 -0.09 -1.92 16 8 C 0.09 1.62 4.29 85.56 0.37 1.99 16 9 N -0.52 -11.22 4.73 -887.55 -4.20 -15.42 16 10 C 0.05 1.18 5.23 86.65 0.45 1.63 16 11 C -0.16 -3.93 6.69 31.80 0.21 -3.72 16 12 C 0.08 1.98 3.07 45.79 0.14 2.12 16 13 H 0.09 1.95 7.19 -2.39 -0.02 1.93 16 14 N -0.68 -19.84 6.01 -464.97 -2.79 -22.64 16 15 C 0.09 2.68 2.50 44.91 0.11 2.79 16 16 H 0.04 1.17 7.83 -2.38 -0.02 1.16 16 17 C -0.13 -3.21 9.40 71.98 0.68 -2.53 16 18 C -0.10 -3.87 4.74 30.60 0.15 -3.72 16 19 C -0.01 -0.25 3.87 29.85 0.12 -0.14 16 20 C -0.53 -31.09 9.66 25.60 0.25 -30.84 16 21 H 0.03 2.03 7.99 -2.91 -0.02 2.00 16 22 C 0.01 0.32 5.47 84.65 0.46 0.78 16 23 N -0.95 -60.80 13.96 21.45 0.30 -60.50 16 24 Si 0.95 45.37 27.47 68.60 1.88 47.26 16 25 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 26 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 27 H -0.25 -11.01 6.54 99.48 0.65 -10.36 16 28 C 0.05 1.08 6.50 86.44 0.56 1.64 16 29 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.06 1.15 8.09 -2.39 -0.02 1.13 16 31 H 0.07 1.61 6.35 -2.39 -0.02 1.60 16 32 H 0.13 1.99 8.06 -2.91 -0.02 1.97 16 33 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 34 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 35 H 0.13 1.80 8.04 -2.91 -0.02 1.77 16 36 H 0.05 0.82 7.67 -2.39 -0.02 0.80 16 37 H 0.09 1.52 7.28 -2.39 -0.02 1.50 16 38 H 0.06 1.61 7.90 -2.39 -0.02 1.60 16 39 H 0.06 1.07 7.83 -2.39 -0.02 1.05 16 40 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.05 1.63 7.56 -2.39 -0.02 1.61 16 42 H 0.34 11.58 5.84 -89.69 -0.52 11.06 16 43 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.06 1.33 7.48 -2.38 -0.02 1.31 16 45 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 47 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 48 H 0.02 0.87 5.48 -2.39 -0.01 0.86 16 49 H 0.01 0.48 7.57 -2.39 -0.02 0.47 16 50 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 51 H 0.06 1.08 7.57 -2.39 -0.02 1.06 16 52 H 0.08 1.95 7.92 -2.39 -0.02 1.94 16 Total: -1.00 -66.36 399.48 0.30 -66.07 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: 0.29 Total: 28.27 kcal Atomic # 6 Polarization: -47.84 SS G_CDS: 4.82 Total: -43.03 kcal Atomic # 7 Polarization: -91.87 SS G_CDS: -6.69 Total: -98.56 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.88 Total: 47.26 kcal Total: -66.36 0.30 -66.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172489624.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.298 kcal (2) G-P(sol) polarization free energy of solvation -66.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds