Wall clock time and date at job start Tue Mar 31 2020 12:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38231 * 119.99379 * 2 1 4 4 C 1.38239 * 120.00084 * 180.02562 * 3 2 1 5 5 C 1.38234 * 119.99592 * 359.95763 * 4 3 2 6 6 C 1.50698 * 120.00093 * 180.02562 * 5 4 3 7 7 N 1.46904 * 109.47326 * 89.99634 * 6 5 4 8 8 C 1.47845 * 110.99935 * 69.15936 * 7 6 5 9 9 C 1.54908 * 104.79717 * 146.36210 * 8 7 6 10 10 C 1.55147 * 101.65049 * 322.93105 * 9 8 7 11 11 H 1.09000 * 110.70143 * 277.26807 * 10 9 8 12 12 N 1.46903 * 110.70446 * 154.03545 * 10 9 8 13 13 C 1.46895 * 110.99986 * 86.44976 * 12 10 9 14 14 H 1.09002 * 109.47182 * 324.99931 * 13 12 10 15 15 C 1.53000 * 109.47168 * 85.00297 * 13 12 10 16 16 C 1.53001 * 109.46945 * 205.00100 * 13 12 10 17 17 C 1.52996 * 109.47337 * 65.00227 * 16 13 12 18 18 C 1.50705 * 109.47143 * 179.97438 * 17 16 13 19 19 H 1.07994 * 119.99843 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99774 * 179.97438 * 18 17 16 21 21 N 1.31511 * 119.99966 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99839 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46990 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47050 * 120.00147 * 22 20 18 25 25 H 1.48499 * 109.47560 * 240.00144 * 22 20 18 26 26 C 1.47439 * 110.99753 * 189.99937 * 7 6 5 27 27 C 1.38243 * 120.00175 * 0.27042 * 5 4 3 28 28 C 1.38229 * 120.00347 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.46981 * 90.00598 * 1 2 3 30 30 H 1.09005 * 109.46715 * 209.99763 * 1 2 3 31 31 H 1.09000 * 109.47472 * 329.99840 * 1 2 3 32 32 H 1.08008 * 120.00652 * 359.97438 * 3 2 1 33 33 H 1.07996 * 120.00619 * 179.97438 * 4 3 2 34 34 H 1.09000 * 109.46871 * 329.99403 * 6 5 4 35 35 H 1.09002 * 109.47086 * 209.99774 * 6 5 4 36 36 H 1.09005 * 110.37246 * 27.53168 * 8 7 6 37 37 H 1.08998 * 110.37354 * 265.19404 * 8 7 6 38 38 H 1.08996 * 110.99351 * 204.83721 * 9 8 7 39 39 H 1.09002 * 110.98650 * 81.01419 * 9 8 7 40 40 H 1.00894 * 111.00120 * 210.41129 * 12 10 9 41 41 H 1.09002 * 109.47368 * 59.99747 * 15 13 12 42 42 H 1.09000 * 109.47124 * 179.97438 * 15 13 12 43 43 H 1.08999 * 109.46645 * 299.99631 * 15 13 12 44 44 H 1.09005 * 109.47124 * 185.00342 * 16 13 12 45 45 H 1.09002 * 109.46982 * 304.99556 * 16 13 12 46 46 H 1.08997 * 109.47312 * 299.99812 * 17 16 13 47 47 H 1.09002 * 109.46896 * 59.99840 * 17 16 13 48 48 H 0.97005 * 119.99874 * 180.02562 * 21 20 18 49 49 H 1.09003 * 109.88723 * 117.34017 * 26 7 6 50 50 H 1.08997 * 110.02921 * 356.22736 * 26 7 6 51 51 H 1.07993 * 120.00121 * 179.73081 * 27 5 4 52 52 H 1.08004 * 119.99700 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1974 -0.0005 5 6 4.2717 0.0003 -0.0002 6 6 5.7787 0.0003 -0.0002 7 7 6.2684 0.0008 1.3848 8 6 5.9821 -1.2889 2.0485 9 6 7.1745 -1.5113 3.0121 10 6 8.3580 -0.9497 2.1808 11 1 8.7239 -1.6976 1.4774 12 7 9.4398 -0.4902 3.0621 13 6 10.3448 -1.5953 3.4050 14 1 9.7726 -2.5186 3.4957 15 6 11.3967 -1.7530 2.3052 16 6 11.0386 -1.2924 4.7346 17 6 9.9987 -1.2581 5.8563 18 6 10.6822 -0.9604 7.1661 19 1 11.7512 -0.8103 7.1953 20 6 9.9424 -0.8787 8.3267 21 7 8.6405 -1.0609 8.2909 22 14 10.7897 -0.5104 9.9503 23 1 12.2482 -0.3487 9.7220 24 1 10.2370 0.7429 10.5240 25 1 10.5576 -1.6320 10.8955 26 6 7.7226 0.2399 1.4309 27 6 3.5806 -1.1970 -0.0050 28 6 2.1983 -1.1971 0.0005 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.6581 2.1326 -0.0004 33 1 4.1205 2.1326 -0.0010 34 1 6.1420 0.8901 -0.5144 35 1 6.1421 -0.8899 -0.5137 36 1 5.9339 -2.0918 1.3128 37 1 5.0484 -1.2289 2.6076 38 1 7.3137 -2.5715 3.2229 39 1 7.0419 -0.9454 3.9343 40 1 9.9463 0.2756 2.6438 41 1 11.9688 -0.8296 2.2144 42 1 12.0685 -2.5727 2.5598 43 1 10.9023 -1.9688 1.3580 44 1 11.7747 -2.0682 4.9453 45 1 11.5377 -0.3254 4.6720 46 1 9.2625 -0.4823 5.6457 47 1 9.4996 -2.2251 5.9188 48 1 8.1200 -1.0031 9.1074 49 1 7.9291 1.1676 1.9647 50 1 8.1237 0.2973 0.4191 51 1 4.1206 -2.1322 -0.0091 52 1 1.6583 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172489778.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:39 Heat of formation + Delta-G solvation = 10.911268 kcal Electronic energy + Delta-G solvation = -26101.070573 eV Core-core repulsion = 22678.175757 eV Total energy + Delta-G solvation = -3422.894815 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.93371 -38.83654 -36.65139 -34.00251 -32.97342 -31.55423 -31.07622 -30.12162 -29.00557 -28.17032 -26.45820 -24.96228 -24.25918 -22.87535 -21.54267 -21.18998 -20.61561 -20.27401 -19.57077 -16.63205 -16.08225 -16.02464 -15.70956 -15.60168 -15.23652 -14.64862 -14.28098 -14.18507 -13.99136 -13.86522 -13.54008 -13.44795 -13.14698 -12.86594 -12.58591 -12.46377 -12.33115 -12.32236 -12.02749 -11.95465 -11.61327 -11.41462 -11.22304 -11.14712 -11.09490 -10.93390 -10.86389 -10.68129 -10.55963 -10.39273 -10.14610 -9.59506 -9.17940 -9.03397 -8.85317 -8.70352 -8.28621 -8.20170 -7.87527 -5.84951 -3.85830 1.17212 1.29358 3.38514 3.45802 3.49743 3.51985 4.08892 4.45838 4.57095 4.58540 4.63252 4.70773 4.83703 4.87226 4.91612 5.06765 5.19036 5.29433 5.30456 5.34121 5.38749 5.41625 5.44009 5.50543 5.54160 5.55093 5.58365 5.59091 5.65446 5.80466 5.93931 5.94769 5.99317 6.03763 6.15275 6.20822 6.27051 6.27960 6.42628 6.44790 6.49948 6.64287 6.73366 6.87075 6.91678 6.97219 7.04685 7.34960 7.55934 7.82510 7.88956 8.11955 8.27795 8.61603 9.23385 9.76607 11.26004 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014718 B = 0.002470 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.920582 B =11335.116270 C =12664.891187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.091 4.091 3 C -0.122 4.122 4 C -0.095 4.095 5 C -0.078 4.078 6 C 0.089 3.911 7 N -0.517 5.517 8 C 0.046 3.954 9 C -0.117 4.117 10 C 0.069 3.931 11 H 0.041 0.959 12 N -0.658 5.658 13 C 0.085 3.915 14 H 0.071 0.929 15 C -0.180 4.180 16 C -0.098 4.098 17 C 0.031 3.969 18 C -0.518 4.518 19 H 0.050 0.950 20 C 0.056 3.944 21 N -0.893 5.893 22 Si 0.885 3.115 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.286 1.286 26 C 0.044 3.956 27 C -0.108 4.108 28 C -0.122 4.122 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.080 0.920 35 H 0.041 0.959 36 H 0.040 0.960 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.095 0.905 40 H 0.335 0.665 41 H 0.053 0.947 42 H 0.058 0.942 43 H 0.041 0.959 44 H 0.045 0.955 45 H 0.046 0.954 46 H 0.033 0.967 47 H 0.006 0.994 48 H 0.257 0.743 49 H 0.089 0.911 50 H 0.048 0.952 51 H 0.117 0.883 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.301 0.985 -22.419 25.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.091 4.091 3 C -0.140 4.140 4 C -0.113 4.113 5 C -0.079 4.079 6 C -0.039 4.039 7 N -0.241 5.241 8 C -0.082 4.082 9 C -0.156 4.156 10 C -0.042 4.042 11 H 0.059 0.941 12 N -0.289 5.289 13 C -0.025 4.025 14 H 0.089 0.911 15 C -0.239 4.239 16 C -0.136 4.136 17 C -0.006 4.006 18 C -0.556 4.556 19 H 0.069 0.931 20 C -0.144 4.144 21 N -0.533 5.533 22 Si 0.714 3.286 23 H -0.199 1.199 24 H -0.211 1.211 25 H -0.212 1.212 26 C -0.084 4.084 27 C -0.127 4.127 28 C -0.140 4.140 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.098 0.902 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.114 0.886 40 H 0.154 0.846 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.064 0.936 45 H 0.065 0.935 46 H 0.052 0.948 47 H 0.024 0.976 48 H 0.067 0.933 49 H 0.107 0.893 50 H 0.067 0.933 51 H 0.135 0.865 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.068 1.328 -21.479 24.673 hybrid contribution 1.345 -0.637 -0.296 1.517 sum -10.723 0.691 -21.775 24.282 Atomic orbital electron populations 1.20786 0.91405 1.02781 1.02087 1.19909 0.95962 0.93297 0.99925 1.21017 0.94217 0.97432 1.01355 1.20997 0.93897 0.97679 0.98735 1.19709 0.94975 0.93227 0.99967 1.21242 0.91279 1.01200 0.90183 1.63604 1.13466 1.32760 1.14316 1.23078 0.99805 0.88938 0.96393 1.22775 0.92142 1.01279 0.99393 1.22690 0.93082 0.95450 0.93000 0.94098 1.60572 1.13373 1.09597 1.45334 1.21757 0.91867 0.93642 0.95239 0.91118 1.22545 1.00316 1.02022 0.99036 1.21625 0.98875 0.99561 0.93543 1.18984 0.93802 0.97267 0.90562 1.21389 0.93807 1.47449 0.92984 0.93130 1.24994 0.94803 0.95790 0.98856 1.69987 1.05211 1.50618 1.27492 0.86645 0.79737 0.77818 0.84412 1.19929 1.21134 1.21218 1.22957 0.86862 0.99698 0.98899 1.21037 0.94177 0.97496 0.99980 1.20972 0.94093 0.97457 1.01450 0.91386 0.91614 0.91585 0.86234 0.85999 0.90165 0.94113 0.94188 0.90222 0.91353 0.88633 0.84649 0.92748 0.92288 0.93961 0.93637 0.93494 0.94829 0.97591 0.93334 0.89262 0.93310 0.86458 0.86298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.01 36.01 0.36 -0.42 16 2 C -0.09 -0.85 5.88 -104.62 -0.62 -1.47 16 3 C -0.12 -1.18 9.70 -39.58 -0.38 -1.56 16 4 C -0.09 -0.98 9.70 -39.58 -0.38 -1.36 16 5 C -0.08 -0.84 5.09 -104.62 -0.53 -1.37 16 6 C 0.09 0.92 4.73 -4.97 -0.02 0.90 16 7 N -0.52 -6.49 5.15 -232.69 -1.20 -7.69 16 8 C 0.05 0.59 5.62 -2.30 -0.01 0.58 16 9 C -0.12 -1.78 6.60 -24.59 -0.16 -1.94 16 10 C 0.07 0.95 3.02 -65.89 -0.20 0.75 16 11 H 0.04 0.55 7.23 -51.93 -0.38 0.17 16 12 N -0.66 -10.45 5.50 -97.84 -0.54 -10.99 16 13 C 0.08 1.41 2.46 -67.71 -0.17 1.25 16 14 H 0.07 1.25 7.75 -51.93 -0.40 0.85 16 15 C -0.18 -2.42 9.15 37.16 0.34 -2.08 16 16 C -0.10 -2.04 4.83 -26.73 -0.13 -2.16 16 17 C 0.03 0.81 4.86 -27.88 -0.14 0.68 16 18 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 19 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -27.57 13.29 55.43 0.74 -26.83 16 22 Si 0.89 22.27 29.54 -169.99 -5.02 17.25 16 23 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 C 0.04 0.54 6.38 -2.84 -0.02 0.52 16 27 C -0.11 -1.11 8.93 -39.58 -0.35 -1.46 16 28 C -0.12 -1.17 9.70 -39.59 -0.38 -1.55 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 31 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 32 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 33 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.08 0.75 7.98 -51.93 -0.41 0.34 16 35 H 0.04 0.40 7.79 -51.93 -0.40 0.00 16 36 H 0.04 0.46 7.01 -51.93 -0.36 0.10 16 37 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 40 H 0.33 4.79 8.19 -39.29 -0.32 4.47 16 41 H 0.05 0.70 8.13 -51.93 -0.42 0.27 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.04 0.51 7.46 -51.93 -0.39 0.12 16 44 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.03 0.95 7.75 -51.93 -0.40 0.55 16 47 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 48 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 49 H 0.09 1.19 7.97 -51.93 -0.41 0.78 16 50 H 0.05 0.51 7.56 -51.93 -0.39 0.12 16 51 H 0.12 1.08 7.50 -52.49 -0.39 0.68 16 52 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 LS Contribution 409.88 15.07 6.18 6.18 Total: -1.00 -31.51 409.88 -12.78 -44.29 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -9.73 Total: 2.36 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: -3.21 Total: -24.56 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: -1.00 Total: -45.51 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -31.51 -12.78 -44.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172489778.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.199 kcal (2) G-P(sol) polarization free energy of solvation -31.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds