Wall clock time and date at job start Tue Mar 31 2020 12:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38231 * 119.99379 * 2 1 4 4 C 1.38239 * 120.00084 * 180.02562 * 3 2 1 5 5 C 1.38234 * 119.99592 * 359.95763 * 4 3 2 6 6 C 1.50698 * 120.00093 * 180.02562 * 5 4 3 7 7 N 1.46904 * 109.47326 * 89.99634 * 6 5 4 8 8 C 1.47845 * 110.99935 * 69.15936 * 7 6 5 9 9 C 1.54908 * 104.79717 * 146.36210 * 8 7 6 10 10 C 1.55147 * 101.65049 * 322.93105 * 9 8 7 11 11 H 1.09000 * 110.70143 * 277.26807 * 10 9 8 12 12 N 1.46903 * 110.70446 * 154.03545 * 10 9 8 13 13 C 1.46895 * 110.99986 * 86.44976 * 12 10 9 14 14 H 1.09002 * 109.47182 * 324.99931 * 13 12 10 15 15 C 1.53000 * 109.47168 * 85.00297 * 13 12 10 16 16 C 1.53001 * 109.46945 * 205.00100 * 13 12 10 17 17 C 1.52996 * 109.47337 * 65.00227 * 16 13 12 18 18 C 1.50705 * 109.47143 * 179.97438 * 17 16 13 19 19 H 1.07994 * 119.99843 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99774 * 179.97438 * 18 17 16 21 21 N 1.31511 * 119.99966 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99839 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46990 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47050 * 120.00147 * 22 20 18 25 25 H 1.48499 * 109.47560 * 240.00144 * 22 20 18 26 26 C 1.47439 * 110.99753 * 189.99937 * 7 6 5 27 27 C 1.38243 * 120.00175 * 0.27042 * 5 4 3 28 28 C 1.38229 * 120.00347 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.46981 * 90.00598 * 1 2 3 30 30 H 1.09005 * 109.46715 * 209.99763 * 1 2 3 31 31 H 1.09000 * 109.47472 * 329.99840 * 1 2 3 32 32 H 1.08008 * 120.00652 * 359.97438 * 3 2 1 33 33 H 1.07996 * 120.00619 * 179.97438 * 4 3 2 34 34 H 1.09000 * 109.46871 * 329.99403 * 6 5 4 35 35 H 1.09002 * 109.47086 * 209.99774 * 6 5 4 36 36 H 1.09005 * 110.37246 * 27.53168 * 8 7 6 37 37 H 1.08998 * 110.37354 * 265.19404 * 8 7 6 38 38 H 1.08996 * 110.99351 * 204.83721 * 9 8 7 39 39 H 1.09002 * 110.98650 * 81.01419 * 9 8 7 40 40 H 1.00894 * 111.00120 * 210.41129 * 12 10 9 41 41 H 1.09002 * 109.47368 * 59.99747 * 15 13 12 42 42 H 1.09000 * 109.47124 * 179.97438 * 15 13 12 43 43 H 1.08999 * 109.46645 * 299.99631 * 15 13 12 44 44 H 1.09005 * 109.47124 * 185.00342 * 16 13 12 45 45 H 1.09002 * 109.46982 * 304.99556 * 16 13 12 46 46 H 1.08997 * 109.47312 * 299.99812 * 17 16 13 47 47 H 1.09002 * 109.46896 * 59.99840 * 17 16 13 48 48 H 0.97005 * 119.99874 * 180.02562 * 21 20 18 49 49 H 1.09003 * 109.88723 * 117.34017 * 26 7 6 50 50 H 1.08997 * 110.02921 * 356.22736 * 26 7 6 51 51 H 1.07993 * 120.00121 * 179.73081 * 27 5 4 52 52 H 1.08004 * 119.99700 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1974 -0.0005 5 6 4.2717 0.0003 -0.0002 6 6 5.7787 0.0003 -0.0002 7 7 6.2684 0.0008 1.3848 8 6 5.9821 -1.2889 2.0485 9 6 7.1745 -1.5113 3.0121 10 6 8.3580 -0.9497 2.1808 11 1 8.7239 -1.6976 1.4774 12 7 9.4398 -0.4902 3.0621 13 6 10.3448 -1.5953 3.4050 14 1 9.7726 -2.5186 3.4957 15 6 11.3967 -1.7530 2.3052 16 6 11.0386 -1.2924 4.7346 17 6 9.9987 -1.2581 5.8563 18 6 10.6822 -0.9604 7.1661 19 1 11.7512 -0.8103 7.1953 20 6 9.9424 -0.8787 8.3267 21 7 8.6405 -1.0609 8.2909 22 14 10.7897 -0.5104 9.9503 23 1 12.2482 -0.3487 9.7220 24 1 10.2370 0.7429 10.5240 25 1 10.5576 -1.6320 10.8955 26 6 7.7226 0.2399 1.4309 27 6 3.5806 -1.1970 -0.0050 28 6 2.1983 -1.1971 0.0005 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.6581 2.1326 -0.0004 33 1 4.1205 2.1326 -0.0010 34 1 6.1420 0.8901 -0.5144 35 1 6.1421 -0.8899 -0.5137 36 1 5.9339 -2.0918 1.3128 37 1 5.0484 -1.2289 2.6076 38 1 7.3137 -2.5715 3.2229 39 1 7.0419 -0.9454 3.9343 40 1 9.9463 0.2756 2.6438 41 1 11.9688 -0.8296 2.2144 42 1 12.0685 -2.5727 2.5598 43 1 10.9023 -1.9688 1.3580 44 1 11.7747 -2.0682 4.9453 45 1 11.5377 -0.3254 4.6720 46 1 9.2625 -0.4823 5.6457 47 1 9.4996 -2.2251 5.9188 48 1 8.1200 -1.0031 9.1074 49 1 7.9291 1.1676 1.9647 50 1 8.1237 0.2973 0.4191 51 1 4.1206 -2.1322 -0.0091 52 1 1.6583 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172489778.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:38 Heat of formation + Delta-G solvation = -7.047544 kcal Electronic energy + Delta-G solvation = -26101.849325 eV Core-core repulsion = 22678.175757 eV Total energy + Delta-G solvation = -3423.673568 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.80191 -39.79596 -37.93555 -35.39080 -34.56085 -32.87108 -31.80851 -31.48123 -30.43124 -29.03526 -27.47188 -26.90567 -25.09681 -23.63166 -23.25104 -22.29033 -21.47920 -21.47411 -21.02662 -18.36545 -17.54571 -17.12597 -16.59523 -16.51142 -16.36697 -16.04326 -15.76954 -15.36252 -15.03251 -14.55985 -14.53036 -14.49229 -14.24539 -14.12432 -14.01890 -13.71137 -13.57437 -13.15459 -13.10383 -13.08364 -12.87404 -12.78736 -12.69544 -12.46027 -12.31686 -12.23693 -11.99768 -11.88751 -11.78795 -11.69323 -11.62859 -11.46845 -11.20224 -10.93098 -10.48081 -9.77735 -9.47514 -9.20675 -9.12646 -8.12612 -6.23066 0.42909 0.55034 1.39413 1.40209 1.53130 2.43997 2.72297 3.13027 3.19513 3.32091 3.62645 3.83925 3.91769 3.96132 4.05191 4.12705 4.16791 4.19612 4.26996 4.34324 4.35217 4.44340 4.48702 4.58602 4.62054 4.67122 4.71239 4.78459 4.84517 4.88804 4.89754 4.92837 4.99338 5.00676 5.05718 5.06252 5.16208 5.23141 5.29522 5.31432 5.32839 5.49144 5.53682 5.60610 5.72945 5.74212 5.91345 5.98180 6.05437 6.10351 6.18782 6.32724 6.36203 6.66806 6.97425 7.44953 8.98596 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014718 B = 0.002470 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.920582 B =11335.116270 C =12664.891187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.099 4.099 3 C -0.133 4.133 4 C -0.108 4.108 5 C -0.094 4.094 6 C 0.092 3.908 7 N -0.532 5.532 8 C 0.059 3.941 9 C -0.120 4.120 10 C 0.077 3.923 11 H 0.058 0.942 12 N -0.680 5.680 13 C 0.093 3.907 14 H 0.056 0.944 15 C -0.168 4.168 16 C -0.088 4.088 17 C 0.042 3.958 18 C -0.542 4.542 19 H 0.055 0.945 20 C -0.003 4.003 21 N -0.932 5.932 22 Si 0.961 3.039 23 H -0.262 1.262 24 H -0.279 1.279 25 H -0.279 1.279 26 C 0.052 3.948 27 C -0.118 4.118 28 C -0.133 4.133 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.135 0.865 33 H 0.127 0.873 34 H 0.092 0.908 35 H 0.051 0.949 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.049 0.951 40 H 0.345 0.655 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.048 0.952 45 H 0.048 0.952 46 H 0.003 0.997 47 H -0.026 1.026 48 H 0.260 0.740 49 H 0.075 0.925 50 H 0.077 0.923 51 H 0.125 0.875 52 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.612 1.182 -23.907 26.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.099 4.099 3 C -0.151 4.151 4 C -0.127 4.127 5 C -0.094 4.094 6 C -0.035 4.035 7 N -0.257 5.257 8 C -0.069 4.069 9 C -0.159 4.159 10 C -0.034 4.034 11 H 0.076 0.924 12 N -0.312 5.312 13 C -0.017 4.017 14 H 0.074 0.926 15 C -0.226 4.226 16 C -0.127 4.127 17 C 0.005 3.995 18 C -0.580 4.580 19 H 0.073 0.927 20 C -0.200 4.200 21 N -0.572 5.572 22 Si 0.785 3.215 23 H -0.186 1.186 24 H -0.205 1.205 25 H -0.204 1.204 26 C -0.076 4.076 27 C -0.137 4.137 28 C -0.151 4.151 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.153 0.847 33 H 0.145 0.855 34 H 0.110 0.890 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.165 0.835 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.021 0.979 47 H -0.008 1.008 48 H 0.069 0.931 49 H 0.094 0.906 50 H 0.095 0.905 51 H 0.143 0.857 52 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.369 1.530 -22.987 25.690 hybrid contribution 1.046 -0.693 0.191 1.269 sum -10.323 0.837 -22.796 25.038 Atomic orbital electron populations 1.20825 0.89700 1.03375 1.03013 1.20264 0.97391 0.93146 0.99134 1.21286 0.94220 0.98366 1.01211 1.21197 0.94484 0.97955 0.99021 1.19833 0.95259 0.93569 1.00754 1.21269 0.91130 1.02235 0.88835 1.63532 1.13711 1.32417 1.16010 1.22893 0.97884 0.90005 0.96100 1.22681 0.94660 1.00178 0.98398 1.22649 0.91768 0.96460 0.92543 0.92393 1.60411 1.13979 1.09948 1.46869 1.21502 0.92597 0.93145 0.94457 0.92602 1.22385 0.99257 1.02785 0.98214 1.21458 0.97463 0.99779 0.93956 1.18782 0.94303 0.94197 0.92196 1.21854 0.94232 1.47526 0.94396 0.92680 1.25961 0.95482 0.95411 1.03124 1.70137 1.06921 1.51427 1.28738 0.85472 0.79028 0.77775 0.79186 1.18627 1.20521 1.20449 1.22866 0.86692 0.98160 0.99905 1.21218 0.94678 0.97728 1.00062 1.21250 0.94164 0.98359 1.01293 0.90203 0.91039 0.91001 0.84736 0.85461 0.88986 0.93059 0.92208 0.91626 0.91992 0.93215 0.83478 0.91733 0.91823 0.91923 0.93351 0.93335 0.97855 1.00810 0.93123 0.90642 0.90504 0.85730 0.84803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 10.01 71.24 0.71 -0.67 16 2 C -0.10 -1.76 5.88 -19.87 -0.12 -1.88 16 3 C -0.13 -2.46 9.70 22.27 0.22 -2.24 16 4 C -0.11 -2.18 9.70 22.27 0.22 -1.96 16 5 C -0.09 -1.93 5.09 -19.86 -0.10 -2.03 16 6 C 0.09 1.78 4.73 85.56 0.40 2.18 16 7 N -0.53 -13.00 5.15 -890.10 -4.59 -17.59 16 8 C 0.06 1.53 5.62 86.77 0.49 2.02 16 9 C -0.12 -3.83 6.60 31.98 0.21 -3.62 16 10 C 0.08 2.08 3.02 46.10 0.14 2.22 16 11 H 0.06 1.41 7.23 -2.39 -0.02 1.39 16 12 N -0.68 -21.64 5.50 -463.44 -2.55 -24.19 16 13 C 0.09 3.07 2.46 44.92 0.11 3.18 16 14 H 0.06 2.01 7.75 -2.39 -0.02 1.99 16 15 C -0.17 -4.08 9.15 71.98 0.66 -3.42 16 16 C -0.09 -3.72 4.83 30.59 0.15 -3.57 16 17 C 0.04 2.33 4.86 29.85 0.15 2.48 16 18 C -0.54 -32.26 9.11 25.60 0.23 -32.03 16 19 H 0.05 3.15 7.74 -2.91 -0.02 3.13 16 20 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 21 N -0.93 -59.26 13.29 21.45 0.28 -58.97 16 22 Si 0.96 46.10 29.54 68.60 2.03 48.13 16 23 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 24 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 25 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 26 C 0.05 1.21 6.38 86.65 0.55 1.76 16 27 C -0.12 -2.32 8.93 22.27 0.20 -2.12 16 28 C -0.13 -2.43 9.70 22.27 0.22 -2.22 16 29 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.07 0.79 8.09 -2.38 -0.02 0.77 16 31 H 0.07 0.79 8.09 -2.39 -0.02 0.77 16 32 H 0.13 1.95 8.06 -2.91 -0.02 1.93 16 33 H 0.13 2.30 8.06 -2.91 -0.02 2.28 16 34 H 0.09 1.54 7.98 -2.39 -0.02 1.52 16 35 H 0.05 0.89 7.79 -2.39 -0.02 0.87 16 36 H 0.06 1.32 7.01 -2.38 -0.02 1.30 16 37 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.35 9.58 8.19 -89.70 -0.73 8.84 16 41 H 0.06 1.46 8.13 -2.39 -0.02 1.44 16 42 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.06 1.30 7.46 -2.39 -0.02 1.28 16 44 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 45 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.00 0.18 7.75 -2.39 -0.02 0.16 16 47 H -0.03 -1.61 8.14 -2.39 -0.02 -1.63 16 48 H 0.26 15.53 8.31 -92.70 -0.77 14.76 16 49 H 0.08 1.98 7.97 -2.39 -0.02 1.96 16 50 H 0.08 1.38 7.56 -2.39 -0.02 1.36 16 51 H 0.12 2.15 7.50 -2.91 -0.02 2.13 16 52 H 0.13 1.93 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -70.16 409.88 0.19 -69.97 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: 0.12 Total: 24.27 kcal Atomic # 6 Polarization: -46.51 SS G_CDS: 4.89 Total: -41.61 kcal Atomic # 7 Polarization: -93.90 SS G_CDS: -6.85 Total: -100.75 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -70.16 0.19 -69.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172489778.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.922 kcal (2) G-P(sol) polarization free energy of solvation -70.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds