Wall clock time and date at job start Tue Mar 31 2020 12:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38308 * 119.92348 * 2 1 4 4 C 1.38085 * 120.07462 * 180.02562 * 3 2 1 5 5 C 1.38932 * 119.92380 * 0.02615 * 4 3 2 6 6 N 1.39668 * 120.07561 * 179.97438 * 5 4 3 7 7 C 1.46956 * 111.00150 * 123.79965 * 6 5 4 8 8 C 1.53055 * 109.36362 * 176.81149 * 7 6 5 9 9 N 1.46962 * 109.36424 * 58.40389 * 8 7 6 10 10 C 1.46900 * 111.00016 * 176.81143 * 9 8 7 11 11 H 1.09001 * 109.47040 * 312.35128 * 10 9 8 12 12 C 1.53004 * 109.47035 * 72.34802 * 10 9 8 13 13 C 1.52997 * 109.46904 * 192.34957 * 10 9 8 14 14 C 1.52998 * 109.47079 * 63.92615 * 13 10 9 15 15 C 1.50703 * 109.47048 * 175.93686 * 14 13 10 16 16 H 1.08002 * 119.99952 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99842 * 179.97438 * 15 14 13 18 18 N 1.31507 * 120.00089 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99492 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47242 * 90.00290 * 19 17 15 21 21 H 1.48504 * 109.47170 * 209.99866 * 19 17 15 22 22 H 1.48498 * 109.47455 * 330.00073 * 19 17 15 23 23 C 1.46956 * 110.87879 * 300.67719 * 9 8 7 24 24 C 1.46962 * 110.99871 * 0.02562 * 6 5 4 25 25 C 1.38892 * 119.85041 * 0.25098 * 5 4 3 26 26 C 1.38123 * 119.92568 * 359.47358 * 25 5 4 27 27 C 1.50704 * 119.96624 * 180.27356 * 26 25 5 28 28 H 1.08999 * 109.47422 * 89.99510 * 1 2 3 29 29 H 1.09001 * 109.46970 * 209.99785 * 1 2 3 30 30 H 1.09003 * 109.47093 * 329.99154 * 1 2 3 31 31 H 1.08004 * 119.96426 * 0.03075 * 3 2 1 32 32 H 1.07994 * 120.03613 * 180.02562 * 4 3 2 33 33 H 1.09000 * 109.48677 * 296.77605 * 7 6 5 34 34 H 1.08996 * 109.49187 * 56.84735 * 7 6 5 35 35 H 1.08996 * 109.48986 * 298.43762 * 8 7 6 36 36 H 1.09003 * 109.50426 * 178.37657 * 8 7 6 37 37 H 1.08992 * 109.47122 * 300.00272 * 12 10 9 38 38 H 1.09001 * 109.46940 * 60.00265 * 12 10 9 39 39 H 1.09004 * 109.46651 * 180.02562 * 12 10 9 40 40 H 1.09006 * 109.47128 * 183.92169 * 13 10 9 41 41 H 1.08996 * 109.47330 * 303.91936 * 13 10 9 42 42 H 1.09005 * 109.46982 * 295.92852 * 14 13 10 43 43 H 1.08992 * 109.47742 * 55.93448 * 14 13 10 44 44 H 0.97001 * 119.99941 * 180.02562 * 18 17 15 45 45 H 1.09002 * 109.49293 * 299.35359 * 23 9 8 46 46 H 1.08998 * 109.50647 * 179.29934 * 23 9 8 47 47 H 1.08999 * 109.48466 * 303.15228 * 24 6 5 48 48 H 1.08992 * 109.49314 * 63.19872 * 24 6 5 49 49 H 1.08004 * 120.03811 * 179.72310 * 25 5 4 50 50 H 1.09000 * 109.46895 * 270.25228 * 27 26 25 51 51 H 1.08996 * 109.46684 * 30.24946 * 27 26 25 52 52 H 1.08995 * 109.47258 * 150.25383 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1987 0.0000 4 6 3.5778 1.2024 -0.0005 5 6 4.2740 0.0001 -0.0016 6 7 5.6707 0.0001 -0.0027 7 6 6.1983 -0.7637 1.1366 8 6 7.7260 -0.8065 1.0550 9 7 8.2527 0.5655 1.0553 10 6 9.7217 0.5655 1.0541 11 1 10.0856 -0.1271 1.8129 12 6 10.2306 0.1288 -0.3211 13 6 10.2319 1.9745 1.3629 14 6 9.8052 2.3728 2.7772 15 6 10.3914 3.7186 3.1185 16 1 11.0070 4.2376 2.3987 17 6 10.1417 4.2871 4.3495 18 7 9.3916 3.6553 5.2257 19 14 10.8689 5.9549 4.7727 20 1 9.9240 7.0251 4.3640 21 1 11.1045 6.0352 6.2367 22 1 12.1564 6.1304 4.0539 23 6 7.7251 1.3292 -0.0840 24 6 6.1974 1.3721 -0.0019 25 6 3.5780 -1.2018 -0.0074 26 6 2.1968 -1.1983 -0.0011 27 6 1.4407 -2.5019 -0.0012 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5140 31 1 1.6551 2.1330 0.0005 32 1 4.1159 2.1387 -0.0001 33 1 5.8971 -0.2829 2.0673 34 1 5.8040 -1.7794 1.1074 35 1 8.0272 -1.3114 0.1372 36 1 8.1213 -1.3479 1.9146 37 1 9.8671 -0.8749 -0.5411 38 1 9.8666 0.8215 -1.0800 39 1 11.3206 0.1284 -0.3218 40 1 11.3196 1.9904 1.2936 41 1 9.8117 2.6786 0.6448 42 1 8.7176 2.4272 2.8268 43 1 10.1647 1.6291 3.4882 44 1 9.2157 4.0555 6.0916 45 1 8.0263 0.8486 -1.0148 46 1 8.1194 2.3450 -0.0552 47 1 5.8024 1.9137 -0.8614 48 1 5.8959 1.8768 0.9159 49 1 4.1162 -2.1382 -0.0128 50 1 1.2576 -2.8157 -1.0289 51 1 2.0287 -3.2629 0.5118 52 1 0.4890 -2.3700 0.5133 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172494412.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:28 Heat of formation + Delta-G solvation = 25.066261 kcal Electronic energy + Delta-G solvation = -26907.269575 eV Core-core repulsion = 23484.988567 eV Total energy + Delta-G solvation = -3422.281009 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.50158 -38.91397 -36.67989 -33.65079 -32.72686 -32.21910 -31.10196 -30.71056 -29.11128 -27.62872 -26.62021 -25.24108 -24.54244 -23.82650 -21.79405 -21.57111 -20.62620 -19.75971 -18.70145 -17.24492 -16.13421 -16.03982 -15.47282 -15.32735 -14.82115 -14.62967 -14.46306 -14.31561 -14.17619 -14.04270 -13.63475 -13.34546 -13.09208 -12.96486 -12.73685 -12.63431 -12.35533 -12.11342 -12.07663 -11.75658 -11.65645 -11.58489 -11.41791 -11.23040 -11.17976 -11.00712 -10.86866 -10.65996 -10.49483 -10.44763 -10.06275 -9.61881 -9.50835 -9.19907 -8.89529 -8.75780 -8.24635 -7.80276 -7.70095 -5.89408 -3.90906 1.32399 1.36767 3.36104 3.42392 3.45481 3.54336 3.89898 4.19819 4.53013 4.68065 4.75290 4.89270 4.95912 5.00611 5.12964 5.18394 5.27821 5.32490 5.37712 5.41647 5.44608 5.46259 5.49710 5.49985 5.55007 5.62158 5.65619 5.66688 5.69582 5.70298 5.85043 5.92632 5.98006 6.04003 6.06477 6.15046 6.19634 6.27545 6.33787 6.35624 6.40811 6.61217 6.65994 6.78790 6.85179 7.02452 7.27253 7.32445 7.48376 7.55455 7.84161 8.06010 8.20767 8.56110 9.18171 9.71898 11.21447 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014893 B = 0.002914 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.577928 B = 9606.543022 C =10774.306707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.121 4.121 3 C -0.090 4.090 4 C -0.171 4.171 5 C 0.119 3.881 6 N -0.491 5.491 7 C 0.063 3.937 8 C 0.055 3.945 9 N -0.519 5.519 10 C 0.083 3.917 11 H 0.077 0.923 12 C -0.184 4.184 13 C -0.101 4.101 14 C 0.032 3.968 15 C -0.520 4.520 16 H 0.050 0.950 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.886 3.114 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.275 1.275 23 C 0.055 3.945 24 C 0.053 3.947 25 C -0.140 4.140 26 C -0.065 4.065 27 C -0.116 4.116 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.120 0.880 32 H 0.128 0.872 33 H 0.055 0.945 34 H 0.079 0.921 35 H 0.038 0.962 36 H 0.081 0.919 37 H 0.046 0.954 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.049 0.951 41 H 0.046 0.954 42 H 0.029 0.971 43 H 0.009 0.991 44 H 0.258 0.742 45 H 0.040 0.960 46 H 0.090 0.910 47 H 0.081 0.919 48 H 0.059 0.941 49 H 0.122 0.878 50 H 0.069 0.931 51 H 0.064 0.936 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.713 -11.901 -12.899 22.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.122 4.122 3 C -0.108 4.108 4 C -0.192 4.192 5 C 0.020 3.980 6 N -0.206 5.206 7 C -0.063 4.063 8 C -0.074 4.074 9 N -0.243 5.243 10 C -0.025 4.025 11 H 0.095 0.905 12 C -0.242 4.242 13 C -0.139 4.139 14 C -0.005 4.005 15 C -0.558 4.558 16 H 0.069 0.931 17 C -0.144 4.144 18 N -0.533 5.533 19 Si 0.714 3.286 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.074 4.074 24 C -0.074 4.074 25 C -0.160 4.160 26 C -0.066 4.066 27 C -0.172 4.172 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.138 0.862 32 H 0.146 0.854 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.056 0.944 36 H 0.099 0.901 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.047 0.953 43 H 0.027 0.973 44 H 0.068 0.932 45 H 0.059 0.941 46 H 0.108 0.892 47 H 0.099 0.901 48 H 0.077 0.923 49 H 0.140 0.860 50 H 0.087 0.913 51 H 0.083 0.917 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.674 -11.893 -12.692 22.757 hybrid contribution 0.534 0.994 0.162 1.141 sum -14.140 -10.899 -12.530 21.811 Atomic orbital electron populations 1.20779 0.91633 1.02495 1.01873 1.19626 0.95741 0.92634 1.04220 1.20855 0.93716 0.97320 0.98940 1.21344 0.94639 0.97595 1.05605 1.18965 0.88352 0.93541 0.97096 1.59287 1.04342 1.15629 1.41374 1.22295 0.95099 0.97812 0.91060 1.22166 0.93342 0.90978 1.00867 1.62305 1.08026 1.12002 1.41968 1.21868 0.85671 0.99995 0.95011 0.90480 1.22494 1.01663 1.00534 0.99559 1.21706 0.98720 0.92201 1.01290 1.18963 0.97518 0.95006 0.88988 1.21351 1.30676 1.04133 0.99649 0.93129 1.24996 0.95433 0.97340 0.96622 1.69976 1.38333 1.38133 1.06884 0.86695 0.79520 0.84916 0.77434 1.20809 1.21342 1.20033 1.22214 0.92902 0.99942 0.92306 1.22387 0.95399 0.87754 1.01844 1.20589 0.93172 0.96767 1.05511 1.19553 0.93147 0.94767 0.99134 1.20844 1.00028 0.94150 1.02196 0.91668 0.91495 0.91940 0.86234 0.85409 0.92645 0.90234 0.94362 0.90082 0.93481 0.92513 0.92309 0.93208 0.93506 0.95304 0.97266 0.93238 0.94145 0.89191 0.90104 0.92257 0.86030 0.91271 0.91702 0.91214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 9.60 36.01 0.35 -0.53 16 2 C -0.12 -1.30 5.88 -104.59 -0.62 -1.91 16 3 C -0.09 -1.02 9.69 -39.61 -0.38 -1.41 16 4 C -0.17 -2.17 8.82 -39.38 -0.35 -2.52 16 5 C 0.12 1.56 5.63 -83.79 -0.47 1.09 16 6 N -0.49 -6.67 4.75 -170.95 -0.81 -7.48 16 7 C 0.06 0.84 5.38 -3.77 -0.02 0.82 16 8 C 0.06 0.77 5.36 -3.76 -0.02 0.75 16 9 N -0.52 -8.53 4.12 -226.48 -0.93 -9.46 16 10 C 0.08 1.39 2.31 -67.71 -0.16 1.23 16 11 H 0.08 1.34 7.98 -51.93 -0.41 0.93 16 12 C -0.18 -2.56 8.39 37.16 0.31 -2.25 16 13 C -0.10 -2.07 4.57 -26.73 -0.12 -2.19 16 14 C 0.03 0.84 4.80 -27.88 -0.13 0.71 16 15 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 16 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -27.35 13.29 55.43 0.74 -26.61 16 19 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 C 0.05 0.82 4.70 -3.76 -0.02 0.80 16 24 C 0.05 0.75 4.29 -3.76 -0.02 0.73 16 25 C -0.14 -1.67 8.85 -39.38 -0.35 -2.02 16 26 C -0.07 -0.70 5.88 -104.65 -0.62 -1.32 16 27 C -0.12 -0.91 9.60 36.01 0.35 -0.56 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.46 5.94 -51.93 -0.31 0.15 16 30 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 31 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16 32 H 0.13 1.56 5.81 -52.49 -0.31 1.26 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 0.91 6.83 -51.93 -0.35 0.56 16 35 H 0.04 0.51 6.85 -51.93 -0.36 0.16 16 36 H 0.08 1.10 8.05 -51.93 -0.42 0.68 16 37 H 0.05 0.61 6.85 -51.93 -0.36 0.25 16 38 H 0.06 0.78 6.39 -51.93 -0.33 0.45 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.05 0.94 6.42 -51.93 -0.33 0.61 16 42 H 0.03 0.81 7.84 -51.93 -0.41 0.40 16 43 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 44 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 45 H 0.04 0.58 6.41 -51.93 -0.33 0.25 16 46 H 0.09 1.45 6.36 -51.93 -0.33 1.12 16 47 H 0.08 1.02 7.17 -51.93 -0.37 0.64 16 48 H 0.06 0.93 7.58 -51.93 -0.39 0.54 16 49 H 0.12 1.32 7.20 -52.48 -0.38 0.94 16 50 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 51 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 52 H 0.07 0.47 5.94 -51.93 -0.31 0.16 16 LS Contribution 390.09 15.07 5.88 5.88 Total: -1.00 -31.21 390.09 -11.87 -43.08 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -9.04 Total: -0.16 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: -2.68 Total: -22.23 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: -1.01 Total: -43.55 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.21 -11.87 -43.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172494412.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.144 kcal (2) G-P(sol) polarization free energy of solvation -31.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds