Wall clock time and date at job start Tue Mar 31 2020 12:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38308 * 119.92348 * 2 1 4 4 C 1.38085 * 120.07462 * 180.02562 * 3 2 1 5 5 C 1.38932 * 119.92380 * 0.02615 * 4 3 2 6 6 N 1.39668 * 120.07561 * 179.97438 * 5 4 3 7 7 C 1.46956 * 111.00150 * 123.79965 * 6 5 4 8 8 C 1.53055 * 109.36362 * 176.81149 * 7 6 5 9 9 N 1.46962 * 109.36424 * 58.40389 * 8 7 6 10 10 C 1.46900 * 111.00016 * 176.81143 * 9 8 7 11 11 H 1.09001 * 109.47040 * 312.35128 * 10 9 8 12 12 C 1.53004 * 109.47035 * 72.34802 * 10 9 8 13 13 C 1.52997 * 109.46904 * 192.34957 * 10 9 8 14 14 C 1.52998 * 109.47079 * 63.92615 * 13 10 9 15 15 C 1.50703 * 109.47048 * 175.93686 * 14 13 10 16 16 H 1.08002 * 119.99952 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99842 * 179.97438 * 15 14 13 18 18 N 1.31507 * 120.00089 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99492 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47242 * 90.00290 * 19 17 15 21 21 H 1.48504 * 109.47170 * 209.99866 * 19 17 15 22 22 H 1.48498 * 109.47455 * 330.00073 * 19 17 15 23 23 C 1.46956 * 110.87879 * 300.67719 * 9 8 7 24 24 C 1.46962 * 110.99871 * 0.02562 * 6 5 4 25 25 C 1.38892 * 119.85041 * 0.25098 * 5 4 3 26 26 C 1.38123 * 119.92568 * 359.47358 * 25 5 4 27 27 C 1.50704 * 119.96624 * 180.27356 * 26 25 5 28 28 H 1.08999 * 109.47422 * 89.99510 * 1 2 3 29 29 H 1.09001 * 109.46970 * 209.99785 * 1 2 3 30 30 H 1.09003 * 109.47093 * 329.99154 * 1 2 3 31 31 H 1.08004 * 119.96426 * 0.03075 * 3 2 1 32 32 H 1.07994 * 120.03613 * 180.02562 * 4 3 2 33 33 H 1.09000 * 109.48677 * 296.77605 * 7 6 5 34 34 H 1.08996 * 109.49187 * 56.84735 * 7 6 5 35 35 H 1.08996 * 109.48986 * 298.43762 * 8 7 6 36 36 H 1.09003 * 109.50426 * 178.37657 * 8 7 6 37 37 H 1.08992 * 109.47122 * 300.00272 * 12 10 9 38 38 H 1.09001 * 109.46940 * 60.00265 * 12 10 9 39 39 H 1.09004 * 109.46651 * 180.02562 * 12 10 9 40 40 H 1.09006 * 109.47128 * 183.92169 * 13 10 9 41 41 H 1.08996 * 109.47330 * 303.91936 * 13 10 9 42 42 H 1.09005 * 109.46982 * 295.92852 * 14 13 10 43 43 H 1.08992 * 109.47742 * 55.93448 * 14 13 10 44 44 H 0.97001 * 119.99941 * 180.02562 * 18 17 15 45 45 H 1.09002 * 109.49293 * 299.35359 * 23 9 8 46 46 H 1.08998 * 109.50647 * 179.29934 * 23 9 8 47 47 H 1.08999 * 109.48466 * 303.15228 * 24 6 5 48 48 H 1.08992 * 109.49314 * 63.19872 * 24 6 5 49 49 H 1.08004 * 120.03811 * 179.72310 * 25 5 4 50 50 H 1.09000 * 109.46895 * 270.25228 * 27 26 25 51 51 H 1.08996 * 109.46684 * 30.24946 * 27 26 25 52 52 H 1.08995 * 109.47258 * 150.25383 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1987 0.0000 4 6 3.5778 1.2024 -0.0005 5 6 4.2740 0.0001 -0.0016 6 7 5.6707 0.0001 -0.0027 7 6 6.1983 -0.7637 1.1366 8 6 7.7260 -0.8065 1.0550 9 7 8.2527 0.5655 1.0553 10 6 9.7217 0.5655 1.0541 11 1 10.0856 -0.1271 1.8129 12 6 10.2306 0.1288 -0.3211 13 6 10.2319 1.9745 1.3629 14 6 9.8052 2.3728 2.7772 15 6 10.3914 3.7186 3.1185 16 1 11.0070 4.2376 2.3987 17 6 10.1417 4.2871 4.3495 18 7 9.3916 3.6553 5.2257 19 14 10.8689 5.9549 4.7727 20 1 9.9240 7.0251 4.3640 21 1 11.1045 6.0352 6.2367 22 1 12.1564 6.1304 4.0539 23 6 7.7251 1.3292 -0.0840 24 6 6.1974 1.3721 -0.0019 25 6 3.5780 -1.2018 -0.0074 26 6 2.1968 -1.1983 -0.0011 27 6 1.4407 -2.5019 -0.0012 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5140 31 1 1.6551 2.1330 0.0005 32 1 4.1159 2.1387 -0.0001 33 1 5.8971 -0.2829 2.0673 34 1 5.8040 -1.7794 1.1074 35 1 8.0272 -1.3114 0.1372 36 1 8.1213 -1.3479 1.9146 37 1 9.8671 -0.8749 -0.5411 38 1 9.8666 0.8215 -1.0800 39 1 11.3206 0.1284 -0.3218 40 1 11.3196 1.9904 1.2936 41 1 9.8117 2.6786 0.6448 42 1 8.7176 2.4272 2.8268 43 1 10.1647 1.6291 3.4882 44 1 9.2157 4.0555 6.0916 45 1 8.0263 0.8486 -1.0148 46 1 8.1194 2.3450 -0.0552 47 1 5.8024 1.9137 -0.8614 48 1 5.8959 1.8768 0.9159 49 1 4.1162 -2.1382 -0.0128 50 1 1.2576 -2.8157 -1.0289 51 1 2.0287 -3.2629 0.5118 52 1 0.4890 -2.3700 0.5133 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172494412.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:27 Heat of formation + Delta-G solvation = 8.058470 kcal Electronic energy + Delta-G solvation = -26908.007089 eV Core-core repulsion = 23484.988567 eV Total energy + Delta-G solvation = -3423.018522 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.51777 -39.99502 -37.82902 -35.46229 -34.03430 -33.27121 -32.32768 -31.90236 -30.64627 -28.45210 -27.58896 -27.03498 -25.64619 -24.90540 -23.33727 -22.65862 -21.92391 -20.96823 -19.92271 -18.40183 -18.24679 -17.01620 -16.65569 -16.52812 -16.26808 -15.94251 -15.73301 -15.31197 -15.26982 -14.94904 -14.68617 -14.52604 -14.43264 -14.12558 -14.02600 -13.54704 -13.40253 -13.35492 -13.18514 -13.13883 -12.86353 -12.80006 -12.70293 -12.55602 -12.45033 -12.35227 -12.16996 -12.03696 -11.78168 -11.65891 -11.60083 -11.38942 -11.19301 -10.92799 -10.49722 -10.48929 -9.62769 -9.04660 -8.68571 -8.14417 -6.24977 0.42466 0.47381 1.38823 1.40234 1.51073 2.42620 2.58405 2.92492 2.97708 3.17913 3.77203 3.83846 3.94145 3.99136 4.08402 4.12905 4.20880 4.27144 4.27933 4.35957 4.38122 4.43113 4.47596 4.49522 4.57843 4.69017 4.74175 4.77261 4.82312 4.85451 4.85530 4.89145 4.94632 4.98907 5.00769 5.03450 5.06355 5.12131 5.21089 5.26589 5.30743 5.36877 5.45948 5.50861 5.58485 5.78035 5.87448 5.90885 5.98338 6.00815 6.24684 6.26690 6.34301 6.38353 6.95069 7.43262 8.96729 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014893 B = 0.002914 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.577928 B = 9606.543022 C =10774.306707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.125 4.125 3 C -0.100 4.100 4 C -0.189 4.189 5 C 0.095 3.905 6 N -0.487 5.487 7 C 0.068 3.932 8 C 0.059 3.941 9 N -0.546 5.546 10 C 0.088 3.912 11 H 0.068 0.932 12 C -0.171 4.171 13 C -0.090 4.090 14 C 0.044 3.956 15 C -0.542 4.542 16 H 0.056 0.944 17 C -0.001 4.001 18 N -0.932 5.932 19 Si 0.960 3.040 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.263 1.263 23 C 0.061 3.939 24 C 0.061 3.939 25 C -0.147 4.147 26 C -0.071 4.071 27 C -0.114 4.114 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.134 0.866 32 H 0.122 0.878 33 H 0.028 0.972 34 H 0.102 0.898 35 H 0.053 0.947 36 H 0.081 0.919 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.052 0.948 41 H 0.049 0.951 42 H -0.002 1.002 43 H -0.022 1.022 44 H 0.260 0.740 45 H 0.055 0.945 46 H 0.073 0.927 47 H 0.094 0.906 48 H 0.032 0.968 49 H 0.131 0.869 50 H 0.080 0.920 51 H 0.070 0.930 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.431 -12.556 -14.358 24.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.126 4.126 3 C -0.119 4.119 4 C -0.210 4.210 5 C -0.002 4.002 6 N -0.203 5.203 7 C -0.058 4.058 8 C -0.069 4.069 9 N -0.271 5.271 10 C -0.020 4.020 11 H 0.086 0.914 12 C -0.230 4.230 13 C -0.128 4.128 14 C 0.007 3.993 15 C -0.580 4.580 16 H 0.074 0.926 17 C -0.199 4.199 18 N -0.573 5.573 19 Si 0.784 3.216 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.188 1.188 23 C -0.067 4.067 24 C -0.067 4.067 25 C -0.167 4.167 26 C -0.072 4.072 27 C -0.170 4.170 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.152 0.848 32 H 0.140 0.860 33 H 0.046 0.954 34 H 0.120 0.880 35 H 0.071 0.929 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.016 0.984 43 H -0.003 1.003 44 H 0.069 0.931 45 H 0.073 0.927 46 H 0.091 0.909 47 H 0.112 0.888 48 H 0.050 0.950 49 H 0.149 0.851 50 H 0.099 0.901 51 H 0.089 0.911 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -15.399 -12.555 -14.170 24.404 hybrid contribution 0.658 1.182 0.651 1.501 sum -14.741 -11.373 -13.519 23.009 Atomic orbital electron populations 1.20836 0.89444 1.03469 1.02885 1.20036 0.97441 0.92284 1.02850 1.21116 0.93335 0.98585 0.98852 1.21448 0.95517 0.97425 1.06569 1.19133 0.88122 0.94346 0.98611 1.59369 1.04928 1.14857 1.41140 1.22267 0.94853 0.98688 0.89996 1.22169 0.93505 0.89646 1.01546 1.62218 1.07899 1.13812 1.43182 1.21663 0.86216 0.97259 0.96821 0.91363 1.22346 1.02132 1.01349 0.97171 1.21516 0.98889 0.94792 0.97602 1.18755 0.95230 0.93521 0.91782 1.21812 1.30829 1.05277 1.00081 0.92616 1.25947 0.95751 1.01640 0.96519 1.70124 1.39642 1.40148 1.07365 0.85535 0.79094 0.79635 0.77294 1.19943 1.20841 1.18751 1.22137 0.93259 0.98959 0.92393 1.22268 0.94925 0.88401 1.01066 1.20793 0.93939 0.96584 1.05416 1.19953 0.92965 0.96233 0.98037 1.20901 1.00286 0.92620 1.03207 0.90502 0.90175 0.91380 0.84800 0.85990 0.95399 0.87989 0.92887 0.90029 0.91852 0.92130 0.91442 0.92895 0.93249 0.98384 1.00331 0.93081 0.92741 0.90857 0.88784 0.94969 0.85081 0.90111 0.91070 0.89900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.47 9.60 71.24 0.68 -0.78 16 2 C -0.13 -2.49 5.88 -19.84 -0.12 -2.61 16 3 C -0.10 -2.25 9.69 22.25 0.22 -2.03 16 4 C -0.19 -4.92 8.82 22.40 0.20 -4.72 16 5 C 0.10 2.52 5.63 38.22 0.22 2.74 16 6 N -0.49 -13.30 4.75 -694.77 -3.30 -16.60 16 7 C 0.07 1.82 5.38 86.31 0.46 2.29 16 8 C 0.06 1.64 5.36 86.31 0.46 2.11 16 9 N -0.55 -18.33 4.12 -870.43 -3.59 -21.92 16 10 C 0.09 2.99 2.31 44.92 0.10 3.09 16 11 H 0.07 2.41 7.98 -2.39 -0.02 2.39 16 12 C -0.17 -4.46 8.39 71.98 0.60 -3.86 16 13 C -0.09 -3.75 4.57 30.59 0.14 -3.61 16 14 C 0.04 2.41 4.80 29.85 0.14 2.55 16 15 C -0.54 -31.78 9.11 25.60 0.23 -31.55 16 16 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 17 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 18 N -0.93 -58.69 13.29 21.45 0.28 -58.40 16 19 Si 0.96 45.55 29.54 68.60 2.03 47.57 16 20 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 21 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 22 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 23 C 0.06 1.84 4.70 86.31 0.41 2.25 16 24 C 0.06 1.77 4.29 86.31 0.37 2.14 16 25 C -0.15 -3.37 8.85 22.40 0.20 -3.18 16 26 C -0.07 -1.42 5.88 -19.88 -0.12 -1.53 16 27 C -0.11 -1.49 9.60 71.24 0.68 -0.80 16 28 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.08 0.86 5.94 -2.39 -0.01 0.85 16 30 H 0.07 0.84 8.08 -2.39 -0.02 0.82 16 31 H 0.13 2.48 8.06 -2.91 -0.02 2.45 16 32 H 0.12 3.18 5.81 -2.91 -0.02 3.16 16 33 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.10 2.26 6.83 -2.39 -0.02 2.24 16 35 H 0.05 1.32 6.85 -2.39 -0.02 1.31 16 36 H 0.08 2.22 8.05 -2.39 -0.02 2.20 16 37 H 0.06 1.46 6.85 -2.39 -0.02 1.45 16 38 H 0.06 1.54 6.39 -2.39 -0.02 1.52 16 39 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 41 H 0.05 2.01 6.42 -2.39 -0.02 2.00 16 42 H 0.00 -0.14 7.84 -2.38 -0.02 -0.16 16 43 H -0.02 -1.30 8.14 -2.39 -0.02 -1.32 16 44 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 45 H 0.05 1.50 6.41 -2.39 -0.02 1.49 16 46 H 0.07 2.44 6.36 -2.39 -0.02 2.43 16 47 H 0.09 2.43 7.17 -2.39 -0.02 2.42 16 48 H 0.03 1.09 7.58 -2.39 -0.02 1.08 16 49 H 0.13 2.65 7.20 -2.91 -0.02 2.63 16 50 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 51 H 0.07 0.85 8.09 -2.39 -0.02 0.83 16 52 H 0.08 0.87 5.94 -2.39 -0.01 0.85 16 Total: -1.00 -68.87 390.09 1.65 -67.22 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 0.88 Total: 19.27 kcal Atomic # 6 Polarization: -42.48 SS G_CDS: 5.35 Total: -37.13 kcal Atomic # 7 Polarization: -90.32 SS G_CDS: -6.61 Total: -96.92 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal Total: -68.87 1.65 -67.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172494412.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.274 kcal (2) G-P(sol) polarization free energy of solvation -68.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds