Wall clock time and date at job start Tue Mar 31 2020 12:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38303 * 119.92637 * 2 1 4 4 C 1.38087 * 120.07753 * 179.72682 * 3 2 1 5 5 C 1.38932 * 119.91775 * 0.54823 * 4 3 2 6 6 N 1.39677 * 120.06886 * 179.75030 * 5 4 3 7 7 C 1.46962 * 110.99841 * 123.77587 * 6 5 4 8 8 C 1.53056 * 109.36266 * 176.80719 * 7 6 5 9 9 N 1.46955 * 109.35952 * 58.40212 * 8 7 6 10 10 C 1.46906 * 110.99664 * 176.80952 * 9 8 7 11 11 H 1.08997 * 109.46870 * 183.80093 * 10 9 8 12 12 C 1.52997 * 109.47146 * 63.80086 * 10 9 8 13 13 C 1.52999 * 109.46834 * 303.79912 * 10 9 8 14 14 C 1.52995 * 109.47357 * 294.99689 * 13 10 9 15 15 C 1.50703 * 109.47193 * 180.02562 * 14 13 10 16 16 H 1.07999 * 120.00363 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99926 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00211 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00164 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47146 * 89.99744 * 19 17 15 21 21 H 1.48500 * 109.47546 * 210.00173 * 19 17 15 22 22 H 1.48501 * 109.46947 * 330.00104 * 19 17 15 23 23 C 1.46948 * 110.88406 * 300.67631 * 9 8 7 24 24 C 1.46953 * 111.00212 * 359.97438 * 6 5 4 25 25 C 1.38885 * 119.85655 * 359.71997 * 5 4 3 26 26 C 1.38125 * 119.92356 * 0.02562 * 25 5 4 27 27 C 1.50701 * 119.96333 * 179.97438 * 26 25 5 28 28 H 1.09002 * 109.47152 * 269.72643 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.72743 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.72724 * 1 2 3 31 31 H 1.08002 * 119.96222 * 359.97438 * 3 2 1 32 32 H 1.07993 * 120.03999 * 180.27455 * 4 3 2 33 33 H 1.09000 * 109.48884 * 296.77469 * 7 6 5 34 34 H 1.09004 * 109.48644 * 56.84421 * 7 6 5 35 35 H 1.08992 * 109.49114 * 298.43490 * 8 7 6 36 36 H 1.09001 * 109.48817 * 178.36550 * 8 7 6 37 37 H 1.09007 * 109.46729 * 299.99772 * 12 10 9 38 38 H 1.08994 * 109.47160 * 59.99969 * 12 10 9 39 39 H 1.08999 * 109.47404 * 180.02562 * 12 10 9 40 40 H 1.08996 * 109.47545 * 55.00565 * 13 10 9 41 41 H 1.09007 * 109.46840 * 175.00284 * 13 10 9 42 42 H 1.09004 * 109.47459 * 300.00280 * 14 13 10 43 43 H 1.08995 * 109.47003 * 60.00383 * 14 13 10 44 44 H 0.96994 * 120.00013 * 179.97438 * 18 17 15 45 45 H 1.09009 * 109.48961 * 299.35710 * 23 9 8 46 46 H 1.09001 * 109.51266 * 179.30369 * 23 9 8 47 47 H 1.09001 * 109.48572 * 303.15446 * 24 6 5 48 48 H 1.09001 * 109.49171 * 63.19978 * 24 6 5 49 49 H 1.08001 * 120.04372 * 180.02562 * 25 5 4 50 50 H 1.09002 * 109.47334 * 270.01744 * 27 26 25 51 51 H 1.08996 * 109.47298 * 30.02177 * 27 26 25 52 52 H 1.09005 * 109.46846 * 150.02175 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1986 0.0000 4 6 3.5779 1.2023 0.0057 5 6 4.2740 0.0000 -0.0001 6 7 5.6708 0.0000 0.0004 7 6 6.1970 -0.7684 1.1372 8 6 7.7249 -0.8110 1.0571 9 7 8.2515 0.5609 1.0636 10 6 9.7205 0.5609 1.0640 11 1 10.0838 1.5860 1.1370 12 6 10.2309 -0.0700 -0.2330 13 6 10.2301 -0.2470 2.2592 14 6 9.8249 0.4530 3.5580 15 6 10.3274 -0.3425 4.7352 16 1 10.8807 -1.2558 4.5733 17 6 10.0807 0.0955 6.0191 18 7 9.4064 1.2073 6.2163 19 14 10.7040 -0.8901 7.4783 20 1 12.0648 -0.4229 7.8462 21 1 9.7873 -0.7013 8.6312 22 1 10.7556 -2.3297 7.1175 23 6 7.7252 1.3294 -0.0731 24 6 6.1974 1.3719 0.0068 25 6 3.5780 -1.2019 -0.0057 26 6 2.1968 -1.1983 -0.0060 27 6 1.4407 -2.5019 -0.0127 28 1 -0.3633 -0.0049 1.0277 29 1 -0.3633 -0.8875 -0.5181 30 1 -0.3633 0.8925 -0.5096 31 1 1.6552 2.1329 -0.0004 32 1 4.1160 2.1386 0.0102 33 1 5.8949 -0.2915 2.0696 34 1 5.8027 -1.7841 1.1033 35 1 8.0271 -1.3122 0.1376 36 1 8.1190 -1.3558 1.9150 37 1 9.8676 -1.0951 -0.3058 38 1 9.8679 0.5056 -1.0844 39 1 11.3209 -0.0704 -0.2324 40 1 9.7956 -1.2463 2.2342 41 1 11.3165 -0.3219 2.2105 42 1 10.2596 1.4523 3.5831 43 1 8.7387 0.5279 3.6067 44 1 9.2326 1.5153 7.1195 45 1 8.0275 0.8524 -1.0056 46 1 8.1195 2.3450 -0.0397 47 1 5.8034 1.9167 -0.8511 48 1 5.8949 1.8733 0.9262 49 1 4.1161 -2.1383 -0.0098 50 1 1.2590 -2.8113 -1.0420 51 1 2.0280 -3.2652 0.4978 52 1 0.4882 -2.3721 0.5012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172494414.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:31 Heat of formation + Delta-G solvation = 25.019908 kcal Electronic energy + Delta-G solvation = -26971.134409 eV Core-core repulsion = 23548.851390 eV Total energy + Delta-G solvation = -3422.283019 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.49975 -38.93027 -36.69634 -33.60737 -32.72523 -32.25721 -31.06220 -30.68553 -29.15277 -27.64413 -26.55681 -25.19180 -24.71138 -23.67168 -21.70899 -21.66359 -20.74771 -19.65282 -18.69902 -17.20644 -16.14474 -16.01691 -15.57034 -15.27955 -14.83716 -14.62101 -14.41313 -14.24946 -14.18133 -14.01702 -13.60903 -13.42131 -13.05797 -12.98564 -12.76445 -12.49535 -12.34008 -12.17280 -12.15117 -11.73350 -11.62764 -11.56191 -11.41342 -11.29289 -11.18069 -10.98709 -10.86905 -10.64432 -10.46907 -10.44629 -10.08687 -9.61505 -9.48623 -9.21543 -8.90008 -8.75028 -8.25651 -7.80779 -7.68799 -5.90473 -3.92236 1.32523 1.37720 3.35582 3.41976 3.44910 3.54948 3.90402 4.21421 4.52154 4.69158 4.75137 4.90559 4.96069 5.08191 5.16448 5.18375 5.27821 5.35676 5.41136 5.41809 5.44723 5.45843 5.47985 5.51232 5.54488 5.61575 5.66138 5.68659 5.70011 5.71397 5.86869 5.92730 5.98135 6.04184 6.09823 6.15870 6.20482 6.29931 6.34357 6.36008 6.39646 6.60819 6.65153 6.79337 6.86253 7.03380 7.24348 7.32699 7.49392 7.55320 7.82744 8.03455 8.18517 8.54237 9.16693 9.70757 11.20349 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013245 B = 0.003041 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.418900 B = 9204.483492 C =10322.572818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.122 4.122 3 C -0.090 4.090 4 C -0.173 4.173 5 C 0.119 3.881 6 N -0.491 5.491 7 C 0.062 3.938 8 C 0.052 3.948 9 N -0.519 5.519 10 C 0.082 3.918 11 H 0.079 0.921 12 C -0.185 4.185 13 C -0.106 4.106 14 C 0.030 3.970 15 C -0.520 4.520 16 H 0.051 0.949 17 C 0.057 3.943 18 N -0.893 5.893 19 Si 0.886 3.114 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.275 1.275 23 C 0.054 3.946 24 C 0.055 3.945 25 C -0.139 4.139 26 C -0.064 4.064 27 C -0.115 4.115 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.119 0.881 32 H 0.126 0.874 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.038 0.962 36 H 0.098 0.902 37 H 0.053 0.947 38 H 0.049 0.951 39 H 0.058 0.942 40 H 0.050 0.950 41 H 0.050 0.950 42 H 0.010 0.990 43 H 0.030 0.970 44 H 0.258 0.742 45 H 0.041 0.959 46 H 0.079 0.921 47 H 0.080 0.920 48 H 0.057 0.943 49 H 0.123 0.877 50 H 0.069 0.931 51 H 0.066 0.934 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.630 -2.414 -16.642 22.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.122 4.122 3 C -0.109 4.109 4 C -0.194 4.194 5 C 0.021 3.979 6 N -0.207 5.207 7 C -0.063 4.063 8 C -0.076 4.076 9 N -0.243 5.243 10 C -0.025 4.025 11 H 0.097 0.903 12 C -0.243 4.243 13 C -0.144 4.144 14 C -0.007 4.007 15 C -0.558 4.558 16 H 0.069 0.931 17 C -0.144 4.144 18 N -0.533 5.533 19 Si 0.715 3.285 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.075 4.075 24 C -0.073 4.073 25 C -0.159 4.159 26 C -0.065 4.065 27 C -0.171 4.171 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.137 0.863 32 H 0.144 0.856 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.056 0.944 36 H 0.116 0.884 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.028 0.972 43 H 0.048 0.952 44 H 0.068 0.932 45 H 0.059 0.941 46 H 0.098 0.902 47 H 0.098 0.902 48 H 0.075 0.925 49 H 0.141 0.859 50 H 0.087 0.913 51 H 0.085 0.915 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.596 -2.309 -16.475 22.131 hybrid contribution 0.504 -0.411 0.726 0.975 sum -14.093 -2.721 -15.749 21.308 Atomic orbital electron populations 1.20743 0.91615 1.02333 1.01945 1.19631 0.95730 0.92633 1.04252 1.20831 0.93700 0.97278 0.99104 1.21295 0.94607 0.97450 1.06035 1.18967 0.88372 0.93551 0.96980 1.59291 1.04352 1.15144 1.41869 1.22341 0.95371 0.97789 0.90803 1.22267 0.92827 0.90841 1.01688 1.62316 1.08004 1.12989 1.41030 1.21854 0.85726 1.00509 0.94459 0.90332 1.22498 1.01650 1.01137 0.99062 1.21799 0.98936 0.98318 0.95361 1.18995 0.97676 0.94867 0.89148 1.21329 1.34657 1.08498 0.91361 0.93115 1.24997 0.95411 0.95095 0.98866 1.69976 1.40453 1.21801 1.21048 0.86692 0.78632 0.80557 0.82665 1.20820 1.21327 1.20006 1.22172 0.93303 0.99045 0.92965 1.22344 0.95207 0.88158 1.01550 1.20621 0.93200 0.96879 1.05247 1.19576 0.93154 0.94786 0.98943 1.20815 0.99992 0.94189 1.02152 0.91603 0.91679 0.91969 0.86310 0.85584 0.92499 0.90139 0.94381 0.88435 0.92772 0.93235 0.92319 0.93183 0.93172 0.97198 0.95199 0.93213 0.94127 0.90247 0.90198 0.92516 0.85921 0.91275 0.91546 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 9.19 36.01 0.33 -0.54 16 2 C -0.12 -1.31 5.88 -104.59 -0.62 -1.92 16 3 C -0.09 -1.01 9.69 -39.61 -0.38 -1.39 16 4 C -0.17 -2.14 8.82 -39.38 -0.35 -2.49 16 5 C 0.12 1.59 5.64 -83.79 -0.47 1.11 16 6 N -0.49 -6.74 4.75 -170.95 -0.81 -7.55 16 7 C 0.06 0.91 5.38 -3.76 -0.02 0.89 16 8 C 0.05 0.81 4.84 -3.77 -0.02 0.79 16 9 N -0.52 -8.55 4.19 -226.49 -0.95 -9.50 16 10 C 0.08 1.39 2.43 -67.71 -0.16 1.23 16 11 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 12 C -0.18 -2.58 8.50 37.16 0.32 -2.26 16 13 C -0.11 -2.16 4.32 -26.73 -0.12 -2.28 16 14 C 0.03 0.78 4.86 -27.88 -0.14 0.64 16 15 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 16 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -27.25 13.29 55.43 0.74 -26.52 16 19 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C 0.05 0.74 5.13 -3.77 -0.02 0.72 16 24 C 0.05 0.71 4.30 -3.77 -0.02 0.70 16 25 C -0.14 -1.72 8.84 -39.38 -0.35 -2.07 16 26 C -0.06 -0.71 5.88 -104.65 -0.62 -1.32 16 27 C -0.11 -0.95 9.19 36.01 0.33 -0.62 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.45 6.69 -51.93 -0.35 0.10 16 30 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 31 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 32 H 0.13 1.43 5.81 -52.49 -0.31 1.13 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.08 1.05 6.82 -51.93 -0.35 0.70 16 35 H 0.04 0.56 6.56 -51.93 -0.34 0.22 16 36 H 0.10 1.69 5.95 -51.93 -0.31 1.38 16 37 H 0.05 0.75 6.56 -51.93 -0.34 0.41 16 38 H 0.05 0.63 6.48 -51.93 -0.34 0.30 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.05 1.00 6.00 -51.93 -0.31 0.69 16 41 H 0.05 1.01 8.14 -51.92 -0.42 0.58 16 42 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.03 0.83 7.75 -51.93 -0.40 0.43 16 44 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 45 H 0.04 0.55 6.48 -51.92 -0.34 0.21 16 46 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 47 H 0.08 0.91 7.17 -51.93 -0.37 0.54 16 48 H 0.06 0.81 7.58 -51.93 -0.39 0.42 16 49 H 0.12 1.42 7.19 -52.49 -0.38 1.04 16 50 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 51 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 52 H 0.07 0.49 6.69 -51.93 -0.35 0.15 16 LS Contribution 389.67 15.07 5.87 5.87 Total: -1.00 -30.99 389.67 -11.94 -42.93 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -9.06 Total: 0.24 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: -2.70 Total: -22.38 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: -1.03 Total: -43.57 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.99 -11.94 -42.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172494414.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.947 kcal (2) G-P(sol) polarization free energy of solvation -30.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds