Wall clock time and date at job start Tue Mar 31 2020 12:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38303 * 119.92637 * 2 1 4 4 C 1.38087 * 120.07753 * 179.72682 * 3 2 1 5 5 C 1.38932 * 119.91775 * 0.54823 * 4 3 2 6 6 N 1.39677 * 120.06886 * 179.75030 * 5 4 3 7 7 C 1.46962 * 110.99841 * 123.77587 * 6 5 4 8 8 C 1.53056 * 109.36266 * 176.80719 * 7 6 5 9 9 N 1.46955 * 109.35952 * 58.40212 * 8 7 6 10 10 C 1.46906 * 110.99664 * 176.80952 * 9 8 7 11 11 H 1.08997 * 109.46870 * 183.80093 * 10 9 8 12 12 C 1.52997 * 109.47146 * 63.80086 * 10 9 8 13 13 C 1.52999 * 109.46834 * 303.79912 * 10 9 8 14 14 C 1.52995 * 109.47357 * 294.99689 * 13 10 9 15 15 C 1.50703 * 109.47193 * 180.02562 * 14 13 10 16 16 H 1.07999 * 120.00363 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99926 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00211 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00164 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47146 * 89.99744 * 19 17 15 21 21 H 1.48500 * 109.47546 * 210.00173 * 19 17 15 22 22 H 1.48501 * 109.46947 * 330.00104 * 19 17 15 23 23 C 1.46948 * 110.88406 * 300.67631 * 9 8 7 24 24 C 1.46953 * 111.00212 * 359.97438 * 6 5 4 25 25 C 1.38885 * 119.85655 * 359.71997 * 5 4 3 26 26 C 1.38125 * 119.92356 * 0.02562 * 25 5 4 27 27 C 1.50701 * 119.96333 * 179.97438 * 26 25 5 28 28 H 1.09002 * 109.47152 * 269.72643 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.72743 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.72724 * 1 2 3 31 31 H 1.08002 * 119.96222 * 359.97438 * 3 2 1 32 32 H 1.07993 * 120.03999 * 180.27455 * 4 3 2 33 33 H 1.09000 * 109.48884 * 296.77469 * 7 6 5 34 34 H 1.09004 * 109.48644 * 56.84421 * 7 6 5 35 35 H 1.08992 * 109.49114 * 298.43490 * 8 7 6 36 36 H 1.09001 * 109.48817 * 178.36550 * 8 7 6 37 37 H 1.09007 * 109.46729 * 299.99772 * 12 10 9 38 38 H 1.08994 * 109.47160 * 59.99969 * 12 10 9 39 39 H 1.08999 * 109.47404 * 180.02562 * 12 10 9 40 40 H 1.08996 * 109.47545 * 55.00565 * 13 10 9 41 41 H 1.09007 * 109.46840 * 175.00284 * 13 10 9 42 42 H 1.09004 * 109.47459 * 300.00280 * 14 13 10 43 43 H 1.08995 * 109.47003 * 60.00383 * 14 13 10 44 44 H 0.96994 * 120.00013 * 179.97438 * 18 17 15 45 45 H 1.09009 * 109.48961 * 299.35710 * 23 9 8 46 46 H 1.09001 * 109.51266 * 179.30369 * 23 9 8 47 47 H 1.09001 * 109.48572 * 303.15446 * 24 6 5 48 48 H 1.09001 * 109.49171 * 63.19978 * 24 6 5 49 49 H 1.08001 * 120.04372 * 180.02562 * 25 5 4 50 50 H 1.09002 * 109.47334 * 270.01744 * 27 26 25 51 51 H 1.08996 * 109.47298 * 30.02177 * 27 26 25 52 52 H 1.09005 * 109.46846 * 150.02175 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1986 0.0000 4 6 3.5779 1.2023 0.0057 5 6 4.2740 0.0000 -0.0001 6 7 5.6708 0.0000 0.0004 7 6 6.1970 -0.7684 1.1372 8 6 7.7249 -0.8110 1.0571 9 7 8.2515 0.5609 1.0636 10 6 9.7205 0.5609 1.0640 11 1 10.0838 1.5860 1.1370 12 6 10.2309 -0.0700 -0.2330 13 6 10.2301 -0.2470 2.2592 14 6 9.8249 0.4530 3.5580 15 6 10.3274 -0.3425 4.7352 16 1 10.8807 -1.2558 4.5733 17 6 10.0807 0.0955 6.0191 18 7 9.4064 1.2073 6.2163 19 14 10.7040 -0.8901 7.4783 20 1 12.0648 -0.4229 7.8462 21 1 9.7873 -0.7013 8.6312 22 1 10.7556 -2.3297 7.1175 23 6 7.7252 1.3294 -0.0731 24 6 6.1974 1.3719 0.0068 25 6 3.5780 -1.2019 -0.0057 26 6 2.1968 -1.1983 -0.0060 27 6 1.4407 -2.5019 -0.0127 28 1 -0.3633 -0.0049 1.0277 29 1 -0.3633 -0.8875 -0.5181 30 1 -0.3633 0.8925 -0.5096 31 1 1.6552 2.1329 -0.0004 32 1 4.1160 2.1386 0.0102 33 1 5.8949 -0.2915 2.0696 34 1 5.8027 -1.7841 1.1033 35 1 8.0271 -1.3122 0.1376 36 1 8.1190 -1.3558 1.9150 37 1 9.8676 -1.0951 -0.3058 38 1 9.8679 0.5056 -1.0844 39 1 11.3209 -0.0704 -0.2324 40 1 9.7956 -1.2463 2.2342 41 1 11.3165 -0.3219 2.2105 42 1 10.2596 1.4523 3.5831 43 1 8.7387 0.5279 3.6067 44 1 9.2326 1.5153 7.1195 45 1 8.0275 0.8524 -1.0056 46 1 8.1195 2.3450 -0.0397 47 1 5.8034 1.9167 -0.8511 48 1 5.8949 1.8733 0.9262 49 1 4.1161 -2.1383 -0.0098 50 1 1.2590 -2.8113 -1.0420 51 1 2.0280 -3.2652 0.4978 52 1 0.4882 -2.3721 0.5012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172494414.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:30 Heat of formation + Delta-G solvation = 8.176031 kcal Electronic energy + Delta-G solvation = -26971.864814 eV Core-core repulsion = 23548.851390 eV Total energy + Delta-G solvation = -3423.013424 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.52355 -40.02171 -37.84584 -35.43958 -33.97171 -33.36532 -32.25434 -31.90964 -30.66576 -28.49922 -27.57459 -26.95858 -25.77431 -24.79243 -23.32695 -22.61702 -22.11835 -20.82525 -19.94153 -18.41946 -18.18699 -17.00880 -16.77070 -16.52249 -16.25841 -15.87894 -15.76766 -15.35439 -15.16270 -14.95442 -14.64188 -14.63166 -14.41030 -14.05078 -14.01897 -13.58161 -13.39389 -13.26831 -13.19572 -13.15838 -12.92158 -12.81379 -12.74719 -12.51918 -12.45437 -12.35264 -12.15001 -12.07613 -11.78870 -11.65008 -11.62145 -11.36752 -11.19914 -10.90624 -10.50099 -10.47578 -9.62596 -9.05429 -8.67691 -8.14425 -6.25015 0.42348 0.47946 1.39173 1.40534 1.51327 2.42731 2.58436 2.93573 2.98445 3.18080 3.76612 3.85933 3.93913 3.99478 4.09421 4.12663 4.22881 4.25032 4.28835 4.35398 4.41956 4.44072 4.46861 4.50929 4.57031 4.69031 4.74695 4.79788 4.81524 4.84819 4.86790 4.88567 4.92535 4.95992 4.98880 5.01712 5.07280 5.13307 5.24106 5.24353 5.31557 5.38144 5.44657 5.49722 5.58748 5.76463 5.86355 5.90216 5.98973 6.00731 6.22942 6.27571 6.33841 6.38992 6.94864 7.43316 8.96738 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013245 B = 0.003041 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.418900 B = 9204.483492 C =10322.572818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.126 4.126 3 C -0.099 4.099 4 C -0.186 4.186 5 C 0.095 3.905 6 N -0.489 5.489 7 C 0.070 3.930 8 C 0.059 3.941 9 N -0.545 5.545 10 C 0.088 3.912 11 H 0.069 0.931 12 C -0.172 4.172 13 C -0.095 4.095 14 C 0.042 3.958 15 C -0.541 4.541 16 H 0.056 0.944 17 C -0.001 4.001 18 N -0.932 5.932 19 Si 0.959 3.041 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.263 1.263 23 C 0.057 3.943 24 C 0.059 3.941 25 C -0.151 4.151 26 C -0.073 4.073 27 C -0.113 4.113 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.138 0.862 32 H 0.130 0.870 33 H 0.025 0.975 34 H 0.094 0.906 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.053 0.947 41 H 0.053 0.947 42 H -0.022 1.022 43 H 0.000 1.000 44 H 0.260 0.740 45 H 0.052 0.948 46 H 0.085 0.915 47 H 0.100 0.900 48 H 0.037 0.963 49 H 0.125 0.875 50 H 0.081 0.919 51 H 0.068 0.932 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.468 -3.587 -17.836 23.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.126 4.126 3 C -0.117 4.117 4 C -0.206 4.206 5 C -0.003 4.003 6 N -0.204 5.204 7 C -0.056 4.056 8 C -0.069 4.069 9 N -0.270 5.270 10 C -0.020 4.020 11 H 0.087 0.913 12 C -0.231 4.231 13 C -0.133 4.133 14 C 0.005 3.995 15 C -0.579 4.579 16 H 0.074 0.926 17 C -0.198 4.198 18 N -0.573 5.573 19 Si 0.784 3.216 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.188 1.188 23 C -0.071 4.071 24 C -0.068 4.068 25 C -0.172 4.172 26 C -0.073 4.073 27 C -0.170 4.170 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.156 0.844 32 H 0.147 0.853 33 H 0.043 0.957 34 H 0.112 0.888 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.072 0.928 42 H -0.004 1.004 43 H 0.019 0.981 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.104 0.896 47 H 0.119 0.881 48 H 0.055 0.945 49 H 0.143 0.857 50 H 0.100 0.900 51 H 0.086 0.914 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.439 -3.488 -17.690 23.737 hybrid contribution 0.669 -0.003 1.108 1.294 sum -14.770 -3.492 -16.582 22.479 Atomic orbital electron populations 1.20799 0.89424 1.03589 1.02689 1.20052 0.97440 0.92305 1.02846 1.21138 0.93386 0.98529 0.98695 1.21460 0.95432 0.97352 1.06378 1.19138 0.88127 0.94406 0.98593 1.59356 1.04980 1.15091 1.40992 1.22205 0.94874 0.98431 0.90042 1.22133 0.93240 0.90357 1.01128 1.62246 1.07879 1.13812 1.43026 1.21661 0.86251 0.99541 0.94540 0.91293 1.22351 1.02127 1.01111 0.97506 1.21607 0.99145 0.98385 0.94141 1.18789 0.95380 0.93591 0.91774 1.21784 1.34659 1.08886 0.92556 0.92593 1.25944 0.95506 0.96174 1.02212 1.70124 1.41715 1.23584 1.21856 0.85536 0.78173 0.79335 0.78524 1.19865 1.20940 1.18754 1.22205 0.93540 0.99004 0.92302 1.22329 0.94870 0.88175 1.01456 1.20803 0.94060 0.96710 1.05585 1.19954 0.92906 0.96305 0.98154 1.20864 1.00193 0.92748 1.03158 0.90972 0.90386 0.90848 0.84391 0.85264 0.95650 0.88803 0.93024 0.90822 0.92514 0.91523 0.91441 0.92815 0.92841 1.00371 0.98117 0.93081 0.92946 0.89642 0.88138 0.94475 0.85666 0.90028 0.91352 0.90088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.45 9.19 71.24 0.65 -0.79 16 2 C -0.13 -2.50 5.88 -19.84 -0.12 -2.62 16 3 C -0.10 -2.11 9.69 22.25 0.22 -1.89 16 4 C -0.19 -4.56 8.82 22.40 0.20 -4.36 16 5 C 0.09 2.52 5.64 38.21 0.22 2.74 16 6 N -0.49 -13.45 4.75 -694.76 -3.30 -16.75 16 7 C 0.07 2.12 5.38 86.31 0.46 2.58 16 8 C 0.06 1.88 4.84 86.31 0.42 2.30 16 9 N -0.54 -18.29 4.19 -870.48 -3.65 -21.94 16 10 C 0.09 2.98 2.43 44.91 0.11 3.09 16 11 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 12 C -0.17 -4.50 8.50 71.98 0.61 -3.89 16 13 C -0.10 -3.93 4.32 30.59 0.13 -3.80 16 14 C 0.04 2.26 4.86 29.85 0.15 2.40 16 15 C -0.54 -31.50 9.11 25.60 0.23 -31.27 16 16 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 17 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 18 N -0.93 -58.50 13.29 21.45 0.28 -58.22 16 19 Si 0.96 45.36 29.54 68.60 2.03 47.39 16 20 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 21 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 22 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 23 C 0.06 1.56 5.13 86.31 0.44 2.00 16 24 C 0.06 1.55 4.30 86.31 0.37 1.92 16 25 C -0.15 -3.69 8.84 22.40 0.20 -3.49 16 26 C -0.07 -1.52 5.88 -19.88 -0.12 -1.64 16 27 C -0.11 -1.65 9.19 71.24 0.65 -1.00 16 28 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.08 0.85 6.69 -2.39 -0.02 0.83 16 30 H 0.07 0.82 8.08 -2.38 -0.02 0.80 16 31 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 32 H 0.13 2.96 5.81 -2.91 -0.02 2.94 16 33 H 0.03 0.90 8.14 -2.39 -0.02 0.89 16 34 H 0.09 2.51 6.82 -2.39 -0.02 2.49 16 35 H 0.05 1.49 6.56 -2.39 -0.02 1.47 16 36 H 0.07 2.66 5.95 -2.39 -0.01 2.64 16 37 H 0.06 1.46 6.56 -2.38 -0.02 1.45 16 38 H 0.07 1.53 6.48 -2.39 -0.02 1.52 16 39 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.05 2.17 6.00 -2.39 -0.01 2.16 16 41 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 42 H -0.02 -1.32 8.14 -2.38 -0.02 -1.34 16 43 H 0.00 0.02 7.75 -2.39 -0.02 0.01 16 44 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 45 H 0.05 1.31 6.48 -2.38 -0.02 1.30 16 46 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 47 H 0.10 2.21 7.17 -2.39 -0.02 2.19 16 48 H 0.04 1.11 7.58 -2.39 -0.02 1.10 16 49 H 0.13 2.86 7.19 -2.91 -0.02 2.84 16 50 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 51 H 0.07 0.97 8.08 -2.39 -0.02 0.95 16 52 H 0.08 0.97 6.69 -2.38 -0.02 0.95 16 Total: -1.00 -68.34 389.67 1.53 -66.81 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 0.88 Total: 20.03 kcal Atomic # 6 Polarization: -42.61 SS G_CDS: 5.29 Total: -37.32 kcal Atomic # 7 Polarization: -90.24 SS G_CDS: -6.67 Total: -96.91 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -68.34 1.53 -66.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172494414.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.986 kcal (2) G-P(sol) polarization free energy of solvation -68.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds