Wall clock time and date at job start Tue Mar 31 2020 11:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.47547 * 2 1 4 4 C 1.53003 * 109.46846 * 119.99606 * 2 1 3 5 5 C 1.52998 * 109.47174 * 294.19920 * 4 2 1 6 6 C 1.50704 * 109.46972 * 184.94508 * 5 4 2 7 7 H 1.07992 * 120.00183 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99821 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00158 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00190 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47416 * 89.99348 * 10 8 6 12 12 H 1.48496 * 109.47097 * 209.99671 * 10 8 6 13 13 H 1.48505 * 109.46884 * 329.99708 * 10 8 6 14 14 N 1.46902 * 109.47623 * 239.99442 * 2 1 3 15 15 C 1.48510 * 111.00269 * 171.68701 * 14 2 1 16 16 C 1.54285 * 104.71626 * 200.72712 * 15 14 2 17 17 H 1.09003 * 112.38051 * 260.85238 * 16 15 14 18 18 C 1.54285 * 108.82188 * 135.72506 * 16 15 14 19 19 N 1.48516 * 104.71539 * 224.27630 * 18 16 15 20 20 C 1.38409 * 110.99850 * 159.27735 * 19 18 16 21 21 N 1.32497 * 119.21774 * 359.72600 * 20 19 18 22 22 C 1.32273 * 120.73596 * 179.72134 * 21 20 19 23 23 C 1.38597 * 119.19985 * 0.54521 * 22 21 20 24 24 C 1.38605 * 118.55974 * 359.73279 * 23 22 21 25 25 N 1.32274 * 119.19731 * 359.97438 * 24 23 22 26 26 C 1.48513 * 104.20592 * 39.72828 * 19 18 16 27 27 C 1.54006 * 104.76360 * 320.27111 * 26 19 18 28 28 H 1.08996 * 112.75406 * 261.18689 * 27 26 19 29 29 C 1.48517 * 110.99498 * 56.28585 * 14 2 1 30 30 H 1.09001 * 109.47485 * 300.00395 * 1 2 3 31 31 H 1.09001 * 109.47025 * 60.00483 * 1 2 3 32 32 H 1.09000 * 109.47130 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47283 * 54.20577 * 4 2 1 34 34 H 1.09006 * 109.47319 * 174.20225 * 4 2 1 35 35 H 1.08996 * 109.47323 * 304.94478 * 5 4 2 36 36 H 1.08996 * 109.47070 * 64.94502 * 5 4 2 37 37 H 0.96999 * 120.00077 * 180.02562 * 9 8 6 38 38 H 1.09008 * 110.38578 * 319.53188 * 15 14 2 39 39 H 1.08997 * 110.39137 * 81.79862 * 15 14 2 40 40 H 1.09005 * 110.39006 * 343.08248 * 18 16 15 41 41 H 1.08999 * 110.38872 * 105.46176 * 18 16 15 42 42 H 1.08002 * 120.39582 * 180.29943 * 22 21 20 43 43 H 1.08003 * 120.72035 * 179.71047 * 23 22 21 44 44 H 1.08006 * 120.40382 * 180.02562 * 24 23 22 45 45 H 1.08994 * 110.38987 * 79.08292 * 26 19 18 46 46 H 1.09007 * 110.38557 * 201.45985 * 26 19 18 47 47 H 1.09000 * 110.38716 * 278.08104 * 29 14 2 48 48 H 1.09001 * 110.38871 * 40.35306 * 29 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6524 0.0794 2.4942 6 6 2.2577 -0.5653 3.7146 7 1 2.8582 -1.4570 3.6125 8 6 2.0438 -0.0172 4.9615 9 7 1.3120 1.0685 5.0859 10 14 2.7934 -0.8166 6.4743 11 1 4.1383 -0.2388 6.7245 12 1 1.9209 -0.5671 7.6497 13 1 2.9170 -2.2796 6.2511 14 7 2.0197 -0.6926 -1.1993 15 6 3.4906 -0.5412 -1.3381 16 6 3.7745 -0.8209 -2.8285 17 1 4.1260 -1.8383 -3.0003 18 6 4.7647 0.2392 -3.3541 19 7 4.2131 0.6510 -4.6701 20 6 4.7055 1.8877 -5.0492 21 7 5.5493 2.5213 -4.2479 22 6 6.0425 3.7020 -4.5829 23 6 5.6577 4.2798 -5.7825 24 6 4.7692 3.5923 -6.5942 25 7 4.3180 2.4122 -6.2026 26 6 2.7456 0.7074 -4.4487 27 6 2.4365 -0.5083 -3.5552 28 1 2.0591 -1.3610 -4.1195 29 6 1.4716 -0.0730 -2.4328 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.5943 -1.7145 1.3028 34 1 3.1250 -0.8120 1.1990 35 1 2.0240 1.0997 2.4003 36 1 0.5670 0.0956 2.5925 37 1 1.1618 1.4543 5.9631 38 1 3.7942 0.4728 -1.0774 39 1 4.0079 -1.2653 -0.7087 40 1 4.8042 1.0914 -2.6755 41 1 5.7566 -0.1956 -3.4772 42 1 6.7337 4.2113 -3.9277 43 1 6.0417 5.2450 -6.0782 44 1 4.4497 4.0147 -7.5355 45 1 2.4738 1.6317 -3.9391 46 1 2.2151 0.6257 -5.3974 47 1 0.4665 -0.4456 -2.6305 48 1 1.4619 1.0130 -2.3402 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172495366.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:48 Heat of formation + Delta-G solvation = 71.625006 kcal Electronic energy + Delta-G solvation = -26450.887570 eV Core-core repulsion = 22927.085157 eV Total energy + Delta-G solvation = -3523.802414 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.64742 -40.13267 -37.41173 -34.66451 -34.06216 -32.88949 -31.54151 -30.86259 -29.71846 -28.26036 -26.43043 -25.16080 -24.47625 -24.37566 -22.50565 -21.72090 -20.97035 -19.56209 -19.17292 -17.88227 -17.64453 -16.77245 -16.33408 -15.95399 -15.55863 -15.12562 -14.82862 -14.73721 -14.35039 -14.33396 -13.89712 -13.61399 -13.29485 -12.70506 -12.53872 -12.36073 -12.27965 -12.10270 -11.88172 -11.44570 -11.37246 -11.18221 -11.17807 -11.03256 -10.99892 -10.85600 -10.73465 -10.61301 -10.50964 -10.38935 -10.20516 -9.60332 -9.52465 -9.27003 -9.00204 -8.81278 -8.31799 -8.17078 -5.97689 -3.99321 0.58571 0.78309 2.92948 3.33359 3.39507 3.42067 3.43409 3.77023 4.05291 4.25954 4.33509 4.37381 4.48475 4.63063 4.67211 4.79079 4.82059 4.93931 5.10571 5.22729 5.26250 5.36084 5.38146 5.44491 5.52251 5.55292 5.61621 5.70088 5.71588 5.78328 5.90268 5.93801 6.01003 6.04935 6.16544 6.24394 6.29929 6.42620 6.43569 6.63604 6.72466 6.77310 6.92180 7.06124 7.22763 7.42942 7.71604 7.81509 7.87079 8.03106 8.46930 9.07965 9.64470 11.13726 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.018046 B = 0.002615 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.210688 B =10706.745074 C =11382.210687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.071 3.929 3 H 0.036 0.964 4 C -0.098 4.098 5 C 0.023 3.977 6 C -0.517 4.517 7 H 0.055 0.945 8 C 0.056 3.944 9 N -0.897 5.897 10 Si 0.891 3.109 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.274 1.274 14 N -0.503 5.503 15 C 0.039 3.961 16 C -0.093 4.093 17 H 0.099 0.901 18 C 0.051 3.949 19 N -0.443 5.443 20 C 0.485 3.515 21 N -0.548 5.548 22 C 0.172 3.828 23 C -0.260 4.260 24 C 0.170 3.830 25 N -0.525 5.525 26 C 0.060 3.940 27 C -0.091 4.091 28 H 0.101 0.899 29 C 0.038 3.962 30 H 0.070 0.930 31 H 0.041 0.959 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.047 0.953 35 H 0.011 0.989 36 H 0.019 0.981 37 H 0.260 0.740 38 H 0.046 0.954 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.169 0.831 43 H 0.147 0.853 44 H 0.170 0.830 45 H 0.053 0.947 46 H 0.095 0.905 47 H 0.083 0.917 48 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.061 4.706 -24.576 25.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.037 4.037 3 H 0.054 0.946 4 C -0.136 4.136 5 C -0.015 4.015 6 C -0.556 4.556 7 H 0.073 0.927 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.719 3.281 11 H -0.207 1.207 12 H -0.213 1.213 13 H -0.198 1.198 14 N -0.227 5.227 15 C -0.089 4.089 16 C -0.113 4.113 17 H 0.118 0.882 18 C -0.076 4.076 19 N -0.163 5.163 20 C 0.129 3.871 21 N -0.267 5.267 22 C 0.004 3.996 23 C -0.284 4.284 24 C 0.002 3.998 25 N -0.243 5.243 26 C -0.067 4.067 27 C -0.111 4.111 28 H 0.119 0.881 29 C -0.091 4.091 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.030 0.970 36 H 0.037 0.963 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.106 0.894 42 H 0.186 0.814 43 H 0.165 0.835 44 H 0.187 0.813 45 H 0.071 0.929 46 H 0.113 0.887 47 H 0.101 0.899 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 5.566 2.956 -24.501 25.298 hybrid contribution 0.980 2.028 1.044 2.483 sum 6.546 4.984 -23.457 24.858 Atomic orbital electron populations 1.21875 0.94615 1.02181 1.01305 1.22002 0.95648 0.95518 0.90496 0.94575 1.21649 0.99448 0.99384 0.93127 1.19123 0.96876 0.94847 0.90630 1.21264 1.31340 1.11238 0.91715 0.92722 1.25021 0.95354 0.95053 0.99075 1.69964 1.39194 1.20896 1.23606 0.86615 0.79048 0.79828 0.82650 1.20728 1.21260 1.19846 1.65494 1.04350 1.51446 1.01436 1.23221 0.90224 1.00722 0.94728 1.22777 0.94054 0.99577 0.94875 0.88245 1.23305 0.98808 0.98182 0.87330 1.61963 1.07051 1.17852 1.29416 1.21346 0.89930 0.88995 0.86815 1.68448 1.14589 1.10270 1.33357 1.23137 0.93318 0.89450 0.93657 1.22776 1.03208 1.03943 0.98438 1.23141 0.89771 0.88540 0.98372 1.68065 1.27708 1.12963 1.15540 1.23207 0.84553 0.97964 1.00932 1.22684 0.95645 0.97210 0.95552 0.88062 1.23205 0.98805 0.97052 0.90011 0.91159 0.94005 0.92151 0.92672 0.93417 0.97048 0.96287 0.93082 0.93598 0.89493 0.90472 0.89386 0.81397 0.83499 0.81300 0.92911 0.88656 0.89908 0.94120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 8.72 37.15 0.32 -2.02 16 2 C 0.07 1.25 1.93 -67.71 -0.13 1.12 16 3 H 0.04 0.67 7.92 -51.93 -0.41 0.26 16 4 C -0.10 -2.06 4.73 -26.73 -0.13 -2.19 16 5 C 0.02 0.59 4.62 -27.88 -0.13 0.46 16 6 C -0.52 -14.80 9.11 -34.44 -0.31 -15.12 16 7 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -27.15 13.29 55.43 0.74 -26.42 16 10 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 14 N -0.50 -7.54 5.20 -222.22 -1.16 -8.69 16 15 C 0.04 0.54 5.23 -2.26 -0.01 0.53 16 16 C -0.09 -1.06 4.13 -87.98 -0.36 -1.43 16 17 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 18 C 0.05 0.59 5.43 -2.26 -0.01 0.58 16 19 N -0.44 -5.39 5.46 -171.33 -0.94 -6.32 16 20 C 0.49 6.05 6.93 -322.80 -2.24 3.81 16 21 N -0.55 -6.48 8.42 -13.93 -0.12 -6.60 16 22 C 0.17 1.47 11.30 -17.23 -0.19 1.27 16 23 C -0.26 -1.76 10.16 -39.31 -0.40 -2.16 16 24 C 0.17 1.36 11.30 -17.23 -0.19 1.16 16 25 N -0.53 -6.06 10.26 -13.93 -0.14 -6.20 16 26 C 0.06 0.65 5.81 -2.41 -0.01 0.64 16 27 C -0.09 -0.99 4.12 -88.13 -0.36 -1.35 16 28 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 29 C 0.04 0.47 4.73 -2.26 -0.01 0.46 16 30 H 0.07 1.27 6.70 -51.93 -0.35 0.92 16 31 H 0.04 0.59 6.86 -51.93 -0.36 0.23 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.05 1.00 6.94 -51.93 -0.36 0.64 16 35 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.02 0.51 6.83 -51.93 -0.35 0.16 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.05 0.68 6.86 -51.92 -0.36 0.32 16 39 H 0.09 1.24 7.58 -51.93 -0.39 0.84 16 40 H 0.08 1.00 6.13 -51.93 -0.32 0.68 16 41 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.17 0.93 8.06 -52.49 -0.42 0.50 16 43 H 0.15 0.51 8.06 -52.48 -0.42 0.08 16 44 H 0.17 0.75 8.06 -52.48 -0.42 0.33 16 45 H 0.05 0.63 6.99 -51.93 -0.36 0.26 16 46 H 0.10 0.98 8.14 -51.92 -0.42 0.55 16 47 H 0.08 0.97 7.65 -51.93 -0.40 0.57 16 48 H 0.04 0.53 7.01 -51.93 -0.36 0.16 16 LS Contribution 371.87 15.07 5.60 5.60 Total: -1.00 -32.81 371.87 -13.10 -45.91 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -7.79 Total: -1.44 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -4.27 Total: -12.70 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: -1.61 Total: -54.24 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.81 -13.10 -45.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172495366.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.535 kcal (2) G-P(sol) polarization free energy of solvation -32.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds