Wall clock time and date at job start Tue Mar 31 2020 11:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.47547 * 2 1 4 4 C 1.53003 * 109.46846 * 119.99606 * 2 1 3 5 5 C 1.52998 * 109.47174 * 294.19920 * 4 2 1 6 6 C 1.50704 * 109.46972 * 184.94508 * 5 4 2 7 7 H 1.07992 * 120.00183 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99821 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00158 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00190 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47416 * 89.99348 * 10 8 6 12 12 H 1.48496 * 109.47097 * 209.99671 * 10 8 6 13 13 H 1.48505 * 109.46884 * 329.99708 * 10 8 6 14 14 N 1.46902 * 109.47623 * 239.99442 * 2 1 3 15 15 C 1.48510 * 111.00269 * 171.68701 * 14 2 1 16 16 C 1.54285 * 104.71626 * 200.72712 * 15 14 2 17 17 H 1.09003 * 112.38051 * 260.85238 * 16 15 14 18 18 C 1.54285 * 108.82188 * 135.72506 * 16 15 14 19 19 N 1.48516 * 104.71539 * 224.27630 * 18 16 15 20 20 C 1.38409 * 110.99850 * 159.27735 * 19 18 16 21 21 N 1.32497 * 119.21774 * 359.72600 * 20 19 18 22 22 C 1.32273 * 120.73596 * 179.72134 * 21 20 19 23 23 C 1.38597 * 119.19985 * 0.54521 * 22 21 20 24 24 C 1.38605 * 118.55974 * 359.73279 * 23 22 21 25 25 N 1.32274 * 119.19731 * 359.97438 * 24 23 22 26 26 C 1.48513 * 104.20592 * 39.72828 * 19 18 16 27 27 C 1.54006 * 104.76360 * 320.27111 * 26 19 18 28 28 H 1.08996 * 112.75406 * 261.18689 * 27 26 19 29 29 C 1.48517 * 110.99498 * 56.28585 * 14 2 1 30 30 H 1.09001 * 109.47485 * 300.00395 * 1 2 3 31 31 H 1.09001 * 109.47025 * 60.00483 * 1 2 3 32 32 H 1.09000 * 109.47130 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47283 * 54.20577 * 4 2 1 34 34 H 1.09006 * 109.47319 * 174.20225 * 4 2 1 35 35 H 1.08996 * 109.47323 * 304.94478 * 5 4 2 36 36 H 1.08996 * 109.47070 * 64.94502 * 5 4 2 37 37 H 0.96999 * 120.00077 * 180.02562 * 9 8 6 38 38 H 1.09008 * 110.38578 * 319.53188 * 15 14 2 39 39 H 1.08997 * 110.39137 * 81.79862 * 15 14 2 40 40 H 1.09005 * 110.39006 * 343.08248 * 18 16 15 41 41 H 1.08999 * 110.38872 * 105.46176 * 18 16 15 42 42 H 1.08002 * 120.39582 * 180.29943 * 22 21 20 43 43 H 1.08003 * 120.72035 * 179.71047 * 23 22 21 44 44 H 1.08006 * 120.40382 * 180.02562 * 24 23 22 45 45 H 1.08994 * 110.38987 * 79.08292 * 26 19 18 46 46 H 1.09007 * 110.38557 * 201.45985 * 26 19 18 47 47 H 1.09000 * 110.38716 * 278.08104 * 29 14 2 48 48 H 1.09001 * 110.38871 * 40.35306 * 29 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6524 0.0794 2.4942 6 6 2.2577 -0.5653 3.7146 7 1 2.8582 -1.4570 3.6125 8 6 2.0438 -0.0172 4.9615 9 7 1.3120 1.0685 5.0859 10 14 2.7934 -0.8166 6.4743 11 1 4.1383 -0.2388 6.7245 12 1 1.9209 -0.5671 7.6497 13 1 2.9170 -2.2796 6.2511 14 7 2.0197 -0.6926 -1.1993 15 6 3.4906 -0.5412 -1.3381 16 6 3.7745 -0.8209 -2.8285 17 1 4.1260 -1.8383 -3.0003 18 6 4.7647 0.2392 -3.3541 19 7 4.2131 0.6510 -4.6701 20 6 4.7055 1.8877 -5.0492 21 7 5.5493 2.5213 -4.2479 22 6 6.0425 3.7020 -4.5829 23 6 5.6577 4.2798 -5.7825 24 6 4.7692 3.5923 -6.5942 25 7 4.3180 2.4122 -6.2026 26 6 2.7456 0.7074 -4.4487 27 6 2.4365 -0.5083 -3.5552 28 1 2.0591 -1.3610 -4.1195 29 6 1.4716 -0.0730 -2.4328 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.5943 -1.7145 1.3028 34 1 3.1250 -0.8120 1.1990 35 1 2.0240 1.0997 2.4003 36 1 0.5670 0.0956 2.5925 37 1 1.1618 1.4543 5.9631 38 1 3.7942 0.4728 -1.0774 39 1 4.0079 -1.2653 -0.7087 40 1 4.8042 1.0914 -2.6755 41 1 5.7566 -0.1956 -3.4772 42 1 6.7337 4.2113 -3.9277 43 1 6.0417 5.2450 -6.0782 44 1 4.4497 4.0147 -7.5355 45 1 2.4738 1.6317 -3.9391 46 1 2.2151 0.6257 -5.3974 47 1 0.4665 -0.4456 -2.6305 48 1 1.4619 1.0130 -2.3402 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172495366.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:47 Heat of formation + Delta-G solvation = 51.184995 kcal Electronic energy + Delta-G solvation = -26451.773916 eV Core-core repulsion = 22927.085157 eV Total energy + Delta-G solvation = -3524.688759 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.42382 -41.07943 -38.57193 -36.14171 -34.78437 -34.65633 -32.73874 -31.87456 -31.04372 -29.54602 -27.72264 -26.55466 -25.59192 -25.18296 -23.85646 -22.61632 -22.48172 -20.71413 -20.49383 -18.65618 -18.53490 -18.39014 -17.65921 -16.71445 -16.56906 -16.40312 -16.09231 -15.91683 -15.80906 -15.37060 -14.87048 -14.61191 -14.39085 -14.24949 -14.07123 -13.62263 -13.36545 -13.26978 -13.21416 -13.08446 -12.87598 -12.62422 -12.37038 -12.30443 -12.11609 -11.96021 -11.93708 -11.91366 -11.72978 -11.58560 -11.46909 -11.26675 -11.15583 -11.00570 -10.54289 -10.24012 -9.65974 -9.37719 -8.20467 -6.31109 -0.09736 0.13823 1.38878 1.40226 1.51632 2.15591 2.40277 2.71731 2.93342 3.06862 3.12528 3.39468 3.48544 3.68415 3.76814 3.83414 3.97769 4.06909 4.09832 4.18277 4.23828 4.31219 4.32544 4.34878 4.45608 4.55746 4.63035 4.64913 4.71923 4.77032 4.80059 4.83028 4.94015 4.97476 5.02915 5.05685 5.11042 5.18273 5.21704 5.26538 5.36543 5.38712 5.51698 5.68475 5.74178 5.85504 5.92337 6.05872 6.20104 6.27909 6.85697 7.08893 7.37826 8.91374 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.018046 B = 0.002615 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.210688 B =10706.745074 C =11382.210687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.081 3.919 3 H 0.020 0.980 4 C -0.083 4.083 5 C 0.030 3.970 6 C -0.542 4.542 7 H 0.057 0.943 8 C -0.001 4.001 9 N -0.933 5.933 10 Si 0.964 3.036 11 H -0.273 1.273 12 H -0.281 1.281 13 H -0.263 1.263 14 N -0.506 5.506 15 C 0.039 3.961 16 C -0.084 4.084 17 H 0.114 0.886 18 C 0.059 3.941 19 N -0.450 5.450 20 C 0.460 3.540 21 N -0.576 5.576 22 C 0.152 3.848 23 C -0.241 4.241 24 C 0.158 3.842 25 N -0.549 5.549 26 C 0.067 3.933 27 C -0.081 4.081 28 H 0.121 0.879 29 C 0.039 3.961 30 H 0.046 0.954 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.044 0.956 35 H -0.017 1.017 36 H 0.000 1.000 37 H 0.263 0.737 38 H 0.030 0.970 39 H 0.081 0.919 40 H 0.058 0.942 41 H 0.089 0.911 42 H 0.193 0.807 43 H 0.187 0.813 44 H 0.205 0.795 45 H 0.038 0.962 46 H 0.104 0.896 47 H 0.097 0.903 48 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.754 4.538 -26.166 27.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.028 4.028 3 H 0.038 0.962 4 C -0.121 4.121 5 C -0.007 4.007 6 C -0.580 4.580 7 H 0.076 0.924 8 C -0.198 4.198 9 N -0.574 5.574 10 Si 0.788 3.212 11 H -0.198 1.198 12 H -0.206 1.206 13 H -0.188 1.188 14 N -0.229 5.229 15 C -0.090 4.090 16 C -0.104 4.104 17 H 0.132 0.868 18 C -0.068 4.068 19 N -0.170 5.170 20 C 0.104 3.896 21 N -0.296 5.296 22 C -0.013 4.013 23 C -0.263 4.263 24 C -0.008 4.008 25 N -0.267 5.267 26 C -0.059 4.059 27 C -0.100 4.100 28 H 0.139 0.861 29 C -0.089 4.089 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.001 0.999 36 H 0.018 0.982 37 H 0.072 0.928 38 H 0.049 0.951 39 H 0.099 0.901 40 H 0.077 0.923 41 H 0.107 0.893 42 H 0.210 0.790 43 H 0.204 0.796 44 H 0.221 0.779 45 H 0.056 0.944 46 H 0.122 0.878 47 H 0.115 0.885 48 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 6.273 2.803 -26.117 27.005 hybrid contribution 0.808 2.227 1.473 2.789 sum 7.081 5.030 -24.644 26.130 Atomic orbital electron populations 1.21794 0.93591 1.02500 1.01443 1.21734 0.96393 0.94242 0.90428 0.96227 1.21398 0.99263 0.98683 0.92793 1.18983 0.95308 0.93918 0.92536 1.21696 1.31683 1.11596 0.93019 0.92438 1.25970 0.95684 0.95555 1.02600 1.70096 1.40353 1.22293 1.24630 0.85470 0.78307 0.79180 0.78253 1.19809 1.20601 1.18752 1.65450 1.05079 1.51075 1.01328 1.23223 0.89531 0.99677 0.96541 1.22726 0.94510 1.00193 0.92924 0.86827 1.23142 0.98959 0.97458 0.87236 1.62009 1.07306 1.18613 1.29092 1.21430 0.91040 0.89553 0.87603 1.68422 1.15215 1.11825 1.34089 1.23728 0.93724 0.88823 0.95071 1.23189 1.01404 1.04806 0.96904 1.23849 0.89605 0.87626 0.99720 1.68069 1.28605 1.14602 1.15382 1.23132 0.84501 0.97218 1.01096 1.22671 0.94674 0.97741 0.94958 0.86127 1.23275 0.99876 0.96615 0.89173 0.93511 0.91352 0.91666 0.92794 0.93677 0.99861 0.98205 0.92791 0.95127 0.90093 0.92325 0.89276 0.78970 0.79609 0.77873 0.94375 0.87763 0.88459 0.94814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.48 8.72 71.98 0.63 -3.85 16 2 C 0.08 2.89 1.93 44.91 0.09 2.98 16 3 H 0.02 0.77 7.92 -2.38 -0.02 0.75 16 4 C -0.08 -3.61 4.73 30.59 0.14 -3.46 16 5 C 0.03 1.63 4.62 29.85 0.14 1.77 16 6 C -0.54 -31.68 9.11 25.60 0.23 -31.45 16 7 H 0.06 3.25 7.74 -2.91 -0.02 3.22 16 8 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 9 N -0.93 -57.71 13.29 21.45 0.28 -57.43 16 10 Si 0.96 45.08 29.54 68.60 2.03 47.11 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 13 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 14 N -0.51 -14.96 5.20 -856.97 -4.45 -19.41 16 15 C 0.04 1.08 5.23 86.43 0.45 1.53 16 16 C -0.08 -1.86 4.13 -9.08 -0.04 -1.89 16 17 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 18 C 0.06 1.40 5.43 86.43 0.47 1.87 16 19 N -0.45 -10.83 5.46 -695.96 -3.80 -14.63 16 20 C 0.46 11.40 6.93 261.48 1.81 13.21 16 21 N -0.58 -13.63 8.42 -197.99 -1.67 -15.30 16 22 C 0.15 2.41 11.30 84.71 0.96 3.37 16 23 C -0.24 -2.62 10.16 22.44 0.23 -2.39 16 24 C 0.16 2.20 11.30 84.71 0.96 3.15 16 25 N -0.55 -12.13 10.26 -197.98 -2.03 -14.17 16 26 C 0.07 1.42 5.81 86.33 0.50 1.92 16 27 C -0.08 -1.64 4.12 -9.18 -0.04 -1.68 16 28 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 29 C 0.04 0.92 4.73 86.43 0.41 1.33 16 30 H 0.05 1.75 6.70 -2.39 -0.02 1.73 16 31 H 0.07 1.86 6.86 -2.39 -0.02 1.85 16 32 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.04 1.94 6.94 -2.38 -0.02 1.92 16 35 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 36 H 0.00 -0.02 6.83 -2.39 -0.02 -0.04 16 37 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 38 H 0.03 0.95 6.86 -2.38 -0.02 0.93 16 39 H 0.08 2.33 7.58 -2.39 -0.02 2.31 16 40 H 0.06 1.60 6.13 -2.38 -0.01 1.58 16 41 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.19 1.82 8.06 -2.91 -0.02 1.80 16 43 H 0.19 0.49 8.06 -2.91 -0.02 0.47 16 44 H 0.20 1.16 8.06 -2.91 -0.02 1.14 16 45 H 0.04 0.91 6.99 -2.39 -0.02 0.90 16 46 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 47 H 0.10 2.06 7.65 -2.39 -0.02 2.04 16 48 H 0.03 0.86 7.01 -2.39 -0.02 0.85 16 Total: -1.00 -72.94 371.87 -1.30 -74.24 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: 0.94 Total: 12.76 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: 7.40 Total: -13.17 kcal Atomic # 7 Polarization: -109.27 SS G_CDS: -11.67 Total: -120.93 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -72.94 -1.30 -74.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172495366.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.425 kcal (2) G-P(sol) polarization free energy of solvation -72.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds