Wall clock time and date at job start Tue Mar 31 2020 11:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46872 * 2 1 4 4 C 1.52993 * 109.46670 * 119.99747 * 2 1 3 5 5 C 1.53004 * 109.47074 * 185.00131 * 4 2 1 6 6 C 1.50700 * 109.47441 * 179.97438 * 5 4 2 7 7 H 1.08004 * 119.99803 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00093 * 179.72071 * 6 5 4 9 9 N 1.31516 * 119.99660 * 0.28211 * 8 6 5 10 10 Si 1.86798 * 119.99784 * 180.27719 * 8 6 5 11 11 H 1.48497 * 109.47542 * 60.00396 * 10 8 6 12 12 H 1.48507 * 109.46720 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47410 * 299.99987 * 10 8 6 14 14 N 1.46893 * 109.47155 * 239.99861 * 2 1 3 15 15 C 1.47538 * 111.00219 * 303.77841 * 14 2 1 16 16 C 1.54546 * 107.31044 * 123.22212 * 15 14 2 17 17 C 1.53892 * 102.85767 * 21.09093 * 16 15 14 18 18 C 1.52198 * 116.02023 * 94.05083 * 17 16 15 19 19 C 1.53747 * 83.14095 * 93.95745 * 18 17 16 20 20 N 1.46050 * 116.18349 * 197.27152 * 17 16 15 21 21 C 1.38401 * 111.00236 * 18.63679 * 20 17 16 22 22 N 1.32496 * 119.21958 * 246.17451 * 21 20 17 23 23 C 1.32275 * 120.73884 * 179.72090 * 22 21 20 24 24 C 1.38604 * 119.19701 * 0.54246 * 23 22 21 25 25 C 1.38602 * 118.56147 * 359.73386 * 24 23 22 26 26 N 1.32275 * 119.19539 * 359.97438 * 25 24 23 27 27 C 1.48086 * 111.00029 * 64.74159 * 14 2 1 28 28 H 1.08999 * 109.47056 * 297.73211 * 1 2 3 29 29 H 1.09003 * 109.46888 * 57.72557 * 1 2 3 30 30 H 1.08993 * 109.47471 * 177.72818 * 1 2 3 31 31 H 1.09003 * 109.47624 * 65.00127 * 4 2 1 32 32 H 1.09003 * 109.47442 * 304.99657 * 4 2 1 33 33 H 1.09003 * 109.46898 * 59.99551 * 5 4 2 34 34 H 1.09003 * 109.46600 * 300.00042 * 5 4 2 35 35 H 0.97003 * 119.99426 * 179.97438 * 9 8 6 36 36 H 1.08998 * 109.87733 * 242.65349 * 15 14 2 37 37 H 1.09008 * 109.87552 * 3.64666 * 15 14 2 38 38 H 1.08997 * 110.73164 * 139.43863 * 16 15 14 39 39 H 1.08998 * 110.73302 * 262.56896 * 16 15 14 40 40 H 1.08997 * 114.23385 * 207.49417 * 18 17 16 41 41 H 1.09002 * 114.23563 * 340.41984 * 18 17 16 42 42 H 1.09005 * 113.42395 * 270.01136 * 19 18 17 43 43 H 1.08996 * 113.42253 * 139.71454 * 19 18 17 44 44 H 1.08001 * 120.40301 * 180.30320 * 23 22 21 45 45 H 1.08001 * 120.72144 * 179.75213 * 24 23 22 46 46 H 1.07995 * 120.40570 * 179.97438 * 25 24 23 47 47 H 1.09001 * 110.40539 * 333.73726 * 27 14 2 48 48 H 1.09001 * 110.40120 * 96.14462 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.0670 -1.3230 2.5446 7 1 3.3685 -1.8035 3.2137 8 6 5.4188 -1.3645 2.8132 9 7 6.2693 -0.7798 1.9982 10 14 6.0418 -2.2510 4.3348 11 1 5.6446 -3.6805 4.2725 12 1 7.5223 -2.1503 4.3949 13 1 5.4542 -1.6264 5.5472 14 7 2.0197 -0.6925 -1.1994 15 6 1.4740 -2.0609 -1.2797 16 6 0.7401 -2.1844 -2.6342 17 6 1.3698 -1.0555 -3.4691 18 6 2.5473 -1.4522 -4.3480 19 6 1.4559 -1.6159 -5.4185 20 7 0.6331 -0.6490 -4.6629 21 6 -0.6855 -1.0643 -4.5974 22 7 -1.1203 -1.9747 -5.4563 23 6 -2.3731 -2.3973 -5.4172 24 6 -3.2361 -1.8677 -4.4708 25 6 -2.7500 -0.9130 -3.5913 26 7 -1.4845 -0.5385 -3.6805 27 6 1.6404 0.0418 -2.4281 28 1 -0.3633 0.4782 0.9096 29 1 -0.3633 0.5488 -0.8689 30 1 -0.3634 -1.0268 -0.0407 31 1 1.7516 -1.7715 1.2057 32 1 1.6053 -0.2616 2.1370 33 1 3.8531 0.4371 1.3574 34 1 3.9994 -1.0728 0.4261 35 1 7.2203 -0.8086 2.1874 36 1 2.2854 -2.7870 -1.2303 37 1 0.7752 -2.2299 -0.4603 38 1 0.9327 -3.1555 -3.0902 39 1 -0.3308 -2.0242 -2.5088 40 1 3.2505 -0.6433 -4.5459 41 1 3.0302 -2.3845 -4.0550 42 1 1.0273 -2.6176 -5.4506 43 1 1.7559 -1.2542 -6.4019 44 1 -2.7204 -3.1432 -6.1169 45 1 -4.2650 -2.1920 -4.4195 46 1 -3.3965 -0.4802 -2.8424 47 1 0.7405 0.6321 -2.2556 48 1 2.4590 0.6826 -2.7558 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172496170.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:24 Heat of formation + Delta-G solvation = 115.581416 kcal Electronic energy + Delta-G solvation = -27522.705828 eV Core-core repulsion = 24000.809508 eV Total energy + Delta-G solvation = -3521.896321 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.35502 -40.25938 -38.09830 -34.17641 -33.81491 -32.69233 -32.09283 -29.76123 -28.74119 -28.57432 -27.63399 -25.09862 -24.71431 -23.39110 -22.64518 -22.37578 -20.81124 -19.39596 -18.85626 -17.84112 -17.36834 -16.57242 -16.04400 -15.99321 -15.72592 -15.06815 -14.98639 -14.43622 -14.34582 -14.05092 -13.67520 -13.46116 -13.09910 -12.78531 -12.42726 -12.36483 -12.14063 -12.05126 -11.73505 -11.65697 -11.48264 -11.36951 -11.15945 -11.06574 -11.00613 -10.87134 -10.68732 -10.42848 -10.35702 -10.21558 -10.00256 -9.55896 -9.45383 -9.16062 -8.91190 -8.85025 -8.19623 -7.72055 -5.85396 -3.86757 0.61637 0.81519 3.03720 3.39874 3.44219 3.45373 3.46576 3.73399 4.15657 4.28290 4.31327 4.43627 4.56187 4.60411 4.75730 4.82133 4.83370 4.99182 5.04965 5.23124 5.34230 5.42365 5.49473 5.50347 5.53987 5.64113 5.66562 5.74619 5.78218 5.84034 5.88936 5.97643 6.02851 6.04456 6.20803 6.24172 6.29891 6.41777 6.52185 6.55162 6.70798 6.93338 6.99630 7.32766 7.46103 7.61710 7.84252 7.88005 8.11373 8.26180 8.60386 9.22115 9.75567 11.25493 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.023149 B = 0.003104 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.241780 B = 9018.206848 C = 9547.619729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.076 3.924 3 H 0.078 0.922 4 C -0.101 4.101 5 C 0.030 3.970 6 C -0.519 4.519 7 H 0.049 0.951 8 C 0.057 3.943 9 N -0.893 5.893 10 Si 0.886 3.114 11 H -0.279 1.279 12 H -0.288 1.288 13 H -0.279 1.279 14 N -0.501 5.501 15 C 0.051 3.949 16 C -0.147 4.147 17 C 0.078 3.922 18 C -0.126 4.126 19 C 0.021 3.979 20 N -0.404 5.404 21 C 0.475 3.525 22 N -0.546 5.546 23 C 0.167 3.833 24 C -0.259 4.259 25 C 0.168 3.832 26 N -0.517 5.517 27 C 0.061 3.939 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.009 0.991 34 H 0.032 0.968 35 H 0.258 0.742 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.103 0.897 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.168 0.832 45 H 0.146 0.854 46 H 0.169 0.831 47 H 0.063 0.937 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.545 -2.947 -16.723 25.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.032 4.032 3 H 0.097 0.903 4 C -0.139 4.139 5 C -0.007 4.007 6 C -0.558 4.558 7 H 0.067 0.933 8 C -0.144 4.144 9 N -0.533 5.533 10 Si 0.714 3.286 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.204 1.204 14 N -0.225 5.225 15 C -0.077 4.077 16 C -0.186 4.186 17 C -0.012 4.012 18 C -0.164 4.164 19 C -0.107 4.107 20 N -0.123 5.123 21 C 0.119 3.881 22 N -0.264 5.264 23 C 0.000 4.000 24 C -0.282 4.282 25 C 0.000 4.000 26 N -0.234 5.234 27 C -0.067 4.067 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.028 0.972 34 H 0.050 0.950 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.122 0.878 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.111 0.889 44 H 0.185 0.815 45 H 0.164 0.836 46 H 0.186 0.814 47 H 0.081 0.919 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -16.869 -1.889 -16.954 23.991 hybrid contribution -1.771 -1.358 0.978 2.436 sum -18.640 -3.247 -15.976 24.763 Atomic orbital electron populations 1.22526 0.98731 1.01412 1.01602 1.22003 0.91146 0.98795 0.91297 0.90350 1.21713 1.00851 0.98134 0.93189 1.18990 0.88043 0.96715 0.96911 1.21308 0.91790 1.34165 1.08539 0.93260 1.24990 0.97139 0.95801 0.96427 1.69973 1.02172 1.44252 1.36902 0.86762 0.77599 0.80287 0.83906 1.20429 1.21396 1.20448 1.63879 1.56398 1.01054 1.01135 1.22768 0.97866 0.92637 0.94477 1.23011 1.00244 0.97686 0.97696 1.22798 0.92470 0.95762 0.90166 1.23091 0.95656 1.03571 0.94129 1.23827 0.92069 0.95831 0.98944 1.65457 0.96386 1.40447 1.09983 1.21791 0.93841 0.86078 0.86357 1.68334 1.17568 1.13410 1.27104 1.23072 0.87800 0.94766 0.94347 1.22760 1.03014 1.02481 0.99969 1.23172 0.90750 0.90998 0.95107 1.68207 1.05203 1.27433 1.22537 1.22762 1.00552 0.95001 0.88431 0.92510 0.92648 0.93046 0.93564 0.93383 0.97235 0.94988 0.93187 0.90192 0.91829 0.91011 0.91067 0.87830 0.89069 0.89087 0.88865 0.81537 0.83605 0.81425 0.91884 0.89801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.73 8.64 37.16 0.32 -2.41 16 2 C 0.08 1.35 2.30 -67.72 -0.16 1.19 16 3 H 0.08 1.45 8.13 -51.93 -0.42 1.03 16 4 C -0.10 -2.12 4.51 -26.73 -0.12 -2.24 16 5 C 0.03 0.81 4.86 -27.88 -0.14 0.67 16 6 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 7 H 0.05 1.39 7.74 -52.48 -0.41 0.98 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 9 N -0.89 -27.49 13.29 55.43 0.74 -26.76 16 10 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 N -0.50 -8.55 4.63 -223.67 -1.04 -9.59 16 15 C 0.05 0.79 5.51 -2.66 -0.01 0.77 16 16 C -0.15 -1.95 5.29 -25.45 -0.13 -2.08 16 17 C 0.08 1.03 0.84 -138.48 -0.12 0.91 16 18 C -0.13 -1.46 7.73 -26.75 -0.21 -1.66 16 19 C 0.02 0.23 7.04 -9.78 -0.07 0.16 16 20 N -0.40 -5.31 6.43 -175.51 -1.13 -6.44 16 21 C 0.47 6.11 5.46 -322.80 -1.76 4.35 16 22 N -0.55 -6.22 8.52 -13.93 -0.12 -6.34 16 23 C 0.17 1.38 11.30 -17.23 -0.19 1.18 16 24 C -0.26 -1.85 10.16 -39.31 -0.40 -2.25 16 25 C 0.17 1.53 11.30 -17.23 -0.19 1.33 16 26 N -0.52 -6.49 8.93 -13.93 -0.12 -6.61 16 27 C 0.06 0.92 6.11 -2.83 -0.02 0.90 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.80 6.31 -51.93 -0.33 0.48 16 30 H 0.05 0.75 6.05 -51.93 -0.31 0.44 16 31 H 0.05 0.96 6.62 -51.93 -0.34 0.62 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.03 0.90 7.75 -51.93 -0.40 0.50 16 35 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 36 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.06 1.00 4.79 -51.92 -0.25 0.75 16 38 H 0.07 0.89 8.06 -51.93 -0.42 0.47 16 39 H 0.07 0.99 5.85 -51.93 -0.30 0.68 16 40 H 0.10 1.16 8.09 -51.93 -0.42 0.74 16 41 H 0.09 1.01 8.13 -51.93 -0.42 0.59 16 42 H 0.09 1.00 7.01 -51.93 -0.36 0.63 16 43 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.17 0.80 8.06 -52.49 -0.42 0.37 16 45 H 0.15 0.57 8.06 -52.49 -0.42 0.15 16 46 H 0.17 1.05 8.06 -52.49 -0.42 0.62 16 47 H 0.06 0.99 5.88 -51.93 -0.31 0.68 16 48 H 0.08 1.29 8.03 -51.93 -0.42 0.87 16 LS Contribution 369.92 15.07 5.57 5.57 Total: -1.00 -33.25 369.92 -12.36 -45.61 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -7.63 Total: 0.42 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: -3.61 Total: -12.98 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: -1.67 Total: -55.73 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.25 -12.36 -45.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172496170.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.194 kcal (2) G-P(sol) polarization free energy of solvation -33.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds