Wall clock time and date at job start Tue Mar 31 2020 11:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46872 * 2 1 4 4 C 1.52993 * 109.46670 * 119.99747 * 2 1 3 5 5 C 1.53004 * 109.47074 * 185.00131 * 4 2 1 6 6 C 1.50700 * 109.47441 * 179.97438 * 5 4 2 7 7 H 1.08004 * 119.99803 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00093 * 179.72071 * 6 5 4 9 9 N 1.31516 * 119.99660 * 0.28211 * 8 6 5 10 10 Si 1.86798 * 119.99784 * 180.27719 * 8 6 5 11 11 H 1.48497 * 109.47542 * 60.00396 * 10 8 6 12 12 H 1.48507 * 109.46720 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47410 * 299.99987 * 10 8 6 14 14 N 1.46893 * 109.47155 * 239.99861 * 2 1 3 15 15 C 1.47538 * 111.00219 * 303.77841 * 14 2 1 16 16 C 1.54546 * 107.31044 * 123.22212 * 15 14 2 17 17 C 1.53892 * 102.85767 * 21.09093 * 16 15 14 18 18 C 1.52198 * 116.02023 * 94.05083 * 17 16 15 19 19 C 1.53747 * 83.14095 * 93.95745 * 18 17 16 20 20 N 1.46050 * 116.18349 * 197.27152 * 17 16 15 21 21 C 1.38401 * 111.00236 * 18.63679 * 20 17 16 22 22 N 1.32496 * 119.21958 * 246.17451 * 21 20 17 23 23 C 1.32275 * 120.73884 * 179.72090 * 22 21 20 24 24 C 1.38604 * 119.19701 * 0.54246 * 23 22 21 25 25 C 1.38602 * 118.56147 * 359.73386 * 24 23 22 26 26 N 1.32275 * 119.19539 * 359.97438 * 25 24 23 27 27 C 1.48086 * 111.00029 * 64.74159 * 14 2 1 28 28 H 1.08999 * 109.47056 * 297.73211 * 1 2 3 29 29 H 1.09003 * 109.46888 * 57.72557 * 1 2 3 30 30 H 1.08993 * 109.47471 * 177.72818 * 1 2 3 31 31 H 1.09003 * 109.47624 * 65.00127 * 4 2 1 32 32 H 1.09003 * 109.47442 * 304.99657 * 4 2 1 33 33 H 1.09003 * 109.46898 * 59.99551 * 5 4 2 34 34 H 1.09003 * 109.46600 * 300.00042 * 5 4 2 35 35 H 0.97003 * 119.99426 * 179.97438 * 9 8 6 36 36 H 1.08998 * 109.87733 * 242.65349 * 15 14 2 37 37 H 1.09008 * 109.87552 * 3.64666 * 15 14 2 38 38 H 1.08997 * 110.73164 * 139.43863 * 16 15 14 39 39 H 1.08998 * 110.73302 * 262.56896 * 16 15 14 40 40 H 1.08997 * 114.23385 * 207.49417 * 18 17 16 41 41 H 1.09002 * 114.23563 * 340.41984 * 18 17 16 42 42 H 1.09005 * 113.42395 * 270.01136 * 19 18 17 43 43 H 1.08996 * 113.42253 * 139.71454 * 19 18 17 44 44 H 1.08001 * 120.40301 * 180.30320 * 23 22 21 45 45 H 1.08001 * 120.72144 * 179.75213 * 24 23 22 46 46 H 1.07995 * 120.40570 * 179.97438 * 25 24 23 47 47 H 1.09001 * 110.40539 * 333.73726 * 27 14 2 48 48 H 1.09001 * 110.40120 * 96.14462 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.0670 -1.3230 2.5446 7 1 3.3685 -1.8035 3.2137 8 6 5.4188 -1.3645 2.8132 9 7 6.2693 -0.7798 1.9982 10 14 6.0418 -2.2510 4.3348 11 1 5.6446 -3.6805 4.2725 12 1 7.5223 -2.1503 4.3949 13 1 5.4542 -1.6264 5.5472 14 7 2.0197 -0.6925 -1.1994 15 6 1.4740 -2.0609 -1.2797 16 6 0.7401 -2.1844 -2.6342 17 6 1.3698 -1.0555 -3.4691 18 6 2.5473 -1.4522 -4.3480 19 6 1.4559 -1.6159 -5.4185 20 7 0.6331 -0.6490 -4.6629 21 6 -0.6855 -1.0643 -4.5974 22 7 -1.1203 -1.9747 -5.4563 23 6 -2.3731 -2.3973 -5.4172 24 6 -3.2361 -1.8677 -4.4708 25 6 -2.7500 -0.9130 -3.5913 26 7 -1.4845 -0.5385 -3.6805 27 6 1.6404 0.0418 -2.4281 28 1 -0.3633 0.4782 0.9096 29 1 -0.3633 0.5488 -0.8689 30 1 -0.3634 -1.0268 -0.0407 31 1 1.7516 -1.7715 1.2057 32 1 1.6053 -0.2616 2.1370 33 1 3.8531 0.4371 1.3574 34 1 3.9994 -1.0728 0.4261 35 1 7.2203 -0.8086 2.1874 36 1 2.2854 -2.7870 -1.2303 37 1 0.7752 -2.2299 -0.4603 38 1 0.9327 -3.1555 -3.0902 39 1 -0.3308 -2.0242 -2.5088 40 1 3.2505 -0.6433 -4.5459 41 1 3.0302 -2.3845 -4.0550 42 1 1.0273 -2.6176 -5.4506 43 1 1.7559 -1.2542 -6.4019 44 1 -2.7204 -3.1432 -6.1169 45 1 -4.2650 -2.1920 -4.4195 46 1 -3.3965 -0.4802 -2.8424 47 1 0.7405 0.6321 -2.2556 48 1 2.4590 0.6826 -2.7558 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172496170.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:24 Heat of formation + Delta-G solvation = 93.833684 kcal Electronic energy + Delta-G solvation = -27523.648881 eV Core-core repulsion = 24000.809508 eV Total energy + Delta-G solvation = -3522.839373 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.24038 -41.11967 -39.34586 -35.75956 -34.77078 -34.19477 -33.16133 -31.42793 -30.09026 -29.43997 -28.78423 -26.96718 -25.51421 -24.15684 -23.85029 -23.62966 -22.61187 -20.49223 -20.06815 -18.62402 -18.46241 -18.18515 -17.64092 -16.82366 -16.61955 -16.47582 -16.12433 -15.72185 -15.53717 -15.07629 -14.68729 -14.50234 -14.38307 -14.35887 -14.03205 -13.71264 -13.48529 -13.17264 -13.08015 -12.90068 -12.78993 -12.70082 -12.65682 -12.38633 -12.32771 -12.10617 -11.89841 -11.79745 -11.75482 -11.50674 -11.25174 -11.19898 -11.06377 -10.89362 -10.46156 -10.18718 -9.70794 -9.05340 -8.11366 -6.22089 -0.08351 0.16582 1.40761 1.44069 1.51771 2.21867 2.45088 2.71487 3.00539 3.06633 3.20671 3.34967 3.49990 3.52331 3.68944 3.78350 4.01296 4.02959 4.07506 4.24151 4.26179 4.29179 4.33599 4.43734 4.46270 4.55096 4.61868 4.66293 4.70832 4.75492 4.81972 4.90862 4.92537 4.97116 4.97354 5.05724 5.05778 5.11302 5.22225 5.31823 5.36856 5.46547 5.60744 5.77535 5.89995 6.03495 6.14182 6.24101 6.27997 6.36169 6.97246 7.11054 7.45764 8.99766 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.023149 B = 0.003104 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.241780 B = 9018.206848 C = 9547.619729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.082 3.918 3 H 0.064 0.936 4 C -0.087 4.087 5 C 0.041 3.959 6 C -0.543 4.543 7 H 0.055 0.945 8 C 0.000 4.000 9 N -0.931 5.931 10 Si 0.960 3.040 11 H -0.267 1.267 12 H -0.284 1.284 13 H -0.268 1.268 14 N -0.524 5.524 15 C 0.053 3.947 16 C -0.129 4.129 17 C 0.080 3.920 18 C -0.126 4.126 19 C 0.033 3.967 20 N -0.419 5.419 21 C 0.452 3.548 22 N -0.561 5.561 23 C 0.156 3.844 24 C -0.239 4.239 25 C 0.150 3.850 26 N -0.547 5.547 27 C 0.066 3.934 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.051 0.949 33 H -0.023 1.023 34 H 0.004 0.996 35 H 0.261 0.739 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.103 0.897 44 H 0.202 0.798 45 H 0.184 0.816 46 H 0.192 0.808 47 H 0.058 0.942 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.830 -4.418 -16.855 27.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.027 4.027 3 H 0.082 0.918 4 C -0.125 4.125 5 C 0.004 3.996 6 C -0.581 4.581 7 H 0.073 0.927 8 C -0.198 4.198 9 N -0.572 5.572 10 Si 0.785 3.215 11 H -0.192 1.192 12 H -0.209 1.209 13 H -0.193 1.193 14 N -0.248 5.248 15 C -0.075 4.075 16 C -0.169 4.169 17 C -0.010 4.010 18 C -0.164 4.164 19 C -0.095 4.095 20 N -0.139 5.139 21 C 0.096 3.904 22 N -0.280 5.280 23 C -0.010 4.010 24 C -0.261 4.261 25 C -0.016 4.016 26 N -0.265 5.265 27 C -0.062 4.062 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.070 0.930 33 H -0.004 1.004 34 H 0.023 0.977 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.121 0.879 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.122 0.878 44 H 0.218 0.782 45 H 0.202 0.798 46 H 0.209 0.791 47 H 0.076 0.924 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -19.196 -3.365 -17.093 25.923 hybrid contribution -1.138 -0.889 0.981 1.746 sum -20.335 -4.254 -16.112 26.290 Atomic orbital electron populations 1.22330 0.95958 1.01934 1.02332 1.21792 0.93185 0.97465 0.90256 0.91774 1.21505 0.96959 0.98852 0.95208 1.18796 0.91706 0.94013 0.95091 1.21755 0.92461 1.34493 1.09417 0.92690 1.25941 0.97394 0.96527 0.99908 1.70123 1.02551 1.45513 1.38987 0.85584 0.77002 0.79284 0.79641 1.19238 1.20914 1.19330 1.63756 1.57421 1.01972 1.01602 1.22692 0.97442 0.91401 0.95964 1.22826 0.99713 0.98179 0.96167 1.22717 0.93509 0.94697 0.90118 1.23105 0.95531 1.03619 0.94159 1.23760 0.91123 0.95651 0.98954 1.65440 0.97271 1.41509 1.09657 1.21752 0.93695 0.87394 0.87579 1.68325 1.19301 1.13387 1.26982 1.23766 0.86966 0.95118 0.95145 1.23161 1.04438 1.00494 0.97996 1.23727 0.90069 0.91631 0.96205 1.68161 1.06741 1.28394 1.23187 1.22662 0.99771 0.95415 0.88357 0.91525 0.92096 0.92528 0.93269 0.93004 1.00416 0.97713 0.93018 0.91720 0.91954 0.90105 0.91173 0.87890 0.88816 0.88930 0.87828 0.78173 0.79816 0.79106 0.92419 0.90820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.82 8.64 71.98 0.62 -4.20 16 2 C 0.08 2.95 2.30 44.92 0.10 3.05 16 3 H 0.06 2.48 8.13 -2.39 -0.02 2.46 16 4 C -0.09 -3.74 4.51 30.59 0.14 -3.61 16 5 C 0.04 2.26 4.86 29.85 0.15 2.41 16 6 C -0.54 -32.03 9.11 25.60 0.23 -31.80 16 7 H 0.05 3.10 7.74 -2.91 -0.02 3.08 16 8 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 9 N -0.93 -58.65 13.29 21.45 0.28 -58.37 16 10 Si 0.96 45.52 29.54 68.60 2.03 47.55 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 12 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 13 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 14 N -0.52 -18.45 4.63 -861.57 -3.99 -22.44 16 15 C 0.05 1.67 5.51 86.71 0.48 2.15 16 16 C -0.13 -3.38 5.29 31.42 0.17 -3.22 16 17 C 0.08 2.12 0.84 -0.47 0.00 2.12 16 18 C -0.13 -2.93 7.73 30.58 0.24 -2.69 16 19 C 0.03 0.70 7.04 81.98 0.58 1.27 16 20 N -0.42 -10.92 6.43 -709.20 -4.56 -15.48 16 21 C 0.45 11.20 5.46 261.49 1.43 12.62 16 22 N -0.56 -11.84 8.52 -197.99 -1.69 -13.53 16 23 C 0.16 2.11 11.30 84.71 0.96 3.07 16 24 C -0.24 -2.58 10.16 22.44 0.23 -2.36 16 25 C 0.15 2.38 11.30 84.71 0.96 3.34 16 26 N -0.55 -13.11 8.93 -197.99 -1.77 -14.87 16 27 C 0.07 2.06 6.11 86.30 0.53 2.58 16 28 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.06 1.72 6.31 -2.39 -0.02 1.70 16 30 H 0.06 1.58 6.05 -2.39 -0.01 1.56 16 31 H 0.05 2.06 6.62 -2.39 -0.02 2.04 16 32 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 33 H -0.02 -1.37 8.14 -2.39 -0.02 -1.39 16 34 H 0.00 0.27 7.75 -2.39 -0.02 0.25 16 35 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 36 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.06 1.95 4.79 -2.38 -0.01 1.94 16 38 H 0.08 1.95 8.06 -2.39 -0.02 1.93 16 39 H 0.07 1.88 5.85 -2.39 -0.01 1.86 16 40 H 0.10 2.37 8.09 -2.39 -0.02 2.35 16 41 H 0.09 2.09 8.13 -2.39 -0.02 2.07 16 42 H 0.09 1.94 7.01 -2.38 -0.02 1.92 16 43 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.20 1.14 8.06 -2.91 -0.02 1.12 16 45 H 0.18 0.52 8.06 -2.91 -0.02 0.50 16 46 H 0.19 1.87 8.06 -2.91 -0.02 1.85 16 47 H 0.06 1.85 5.88 -2.39 -0.01 1.83 16 48 H 0.07 2.39 8.03 -2.39 -0.02 2.37 16 Total: -1.00 -73.63 369.92 -1.49 -75.12 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 0.94 Total: 16.81 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: 7.26 Total: -14.80 kcal Atomic # 7 Polarization: -112.97 SS G_CDS: -11.72 Total: -124.69 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -73.63 -1.49 -75.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172496170.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.957 kcal (2) G-P(sol) polarization free energy of solvation -73.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds