Wall clock time and date at job start Tue Mar 31 2020 11:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.46843 * 2 1 4 4 C 1.52997 * 109.47503 * 240.00247 * 2 1 3 5 5 C 1.52992 * 109.47463 * 175.00009 * 4 2 1 6 6 C 1.50701 * 109.47072 * 179.97438 * 5 4 2 7 7 H 1.08001 * 120.00267 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99721 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00409 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99672 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47314 * 60.00074 * 10 8 6 12 12 H 1.48500 * 109.46949 * 179.97438 * 10 8 6 13 13 H 1.48492 * 109.47267 * 299.99786 * 10 8 6 14 14 N 1.46902 * 109.47223 * 119.99519 * 2 1 3 15 15 C 1.48626 * 110.99609 * 58.07726 * 14 2 1 16 16 C 1.54585 * 104.63594 * 201.35990 * 15 14 2 17 17 C 1.53489 * 104.73509 * 23.72549 * 16 15 14 18 18 C 1.52654 * 115.47666 * 128.80354 * 17 16 15 19 19 C 1.53669 * 83.30928 * 143.41321 * 18 17 16 20 20 N 1.46560 * 115.53599 * 230.59673 * 17 16 15 21 21 C 1.38409 * 110.99681 * 104.10248 * 20 17 16 22 22 N 1.32486 * 119.21980 * 299.60303 * 21 20 17 23 23 C 1.32276 * 120.74026 * 180.27989 * 22 21 20 24 24 C 1.38604 * 119.20082 * 0.02562 * 23 22 21 25 25 C 1.38605 * 118.55470 * 359.97438 * 24 23 22 26 26 N 1.32270 * 119.20003 * 0.02562 * 25 24 23 27 27 C 1.48751 * 111.00263 * 302.47825 * 14 2 1 28 28 H 1.09000 * 109.47490 * 185.17646 * 1 2 3 29 29 H 1.09004 * 109.47497 * 305.17468 * 1 2 3 30 30 H 1.09003 * 109.47190 * 65.17744 * 1 2 3 31 31 H 1.09003 * 109.46510 * 295.00115 * 4 2 1 32 32 H 1.09000 * 109.46883 * 54.99111 * 4 2 1 33 33 H 1.09003 * 109.47344 * 299.99596 * 5 4 2 34 34 H 1.09000 * 109.47804 * 59.99666 * 5 4 2 35 35 H 0.96998 * 120.00291 * 179.97438 * 9 8 6 36 36 H 1.08994 * 110.40920 * 82.56678 * 15 14 2 37 37 H 1.09008 * 110.50343 * 320.19454 * 15 14 2 38 38 H 1.08997 * 110.38712 * 264.91315 * 16 15 14 39 39 H 1.09004 * 110.48505 * 142.58586 * 16 15 14 40 40 H 1.08997 * 114.21117 * 29.83834 * 18 17 16 41 41 H 1.08999 * 114.21613 * 256.98495 * 18 17 16 42 42 H 1.08995 * 113.44917 * 219.90975 * 19 18 17 43 43 H 1.09000 * 113.44357 * 89.53249 * 19 18 17 44 44 H 1.08006 * 120.39841 * 180.02562 * 23 22 21 45 45 H 1.07994 * 120.72158 * 180.02562 * 24 23 22 46 46 H 1.08003 * 120.40099 * 179.97438 * 25 24 23 47 47 H 1.09002 * 110.44813 * 39.63608 * 27 14 2 48 48 H 1.08998 * 110.44946 * 277.09507 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3136 6 6 4.0672 -1.3241 -2.5438 7 1 3.3688 -1.8052 -3.2126 8 6 5.4184 -1.3603 -2.8155 9 7 6.2689 -0.7741 -2.0015 10 14 6.0412 -2.2421 -4.3400 11 1 5.4486 -1.6176 -5.5499 12 1 7.5211 -2.1362 -4.4032 13 1 5.6491 -3.6731 -4.2790 14 7 2.0196 -0.6924 1.1995 15 6 1.5054 -2.0857 1.2574 16 6 1.6167 -2.4815 2.7476 17 6 1.6046 -1.1481 3.5076 18 6 0.5947 -1.0516 4.6483 19 6 1.7114 -0.2447 5.3291 20 7 2.6826 -0.9676 4.4840 21 6 3.6532 -0.1087 3.9980 22 7 4.3020 -0.4278 2.8879 23 6 5.2390 0.3682 2.3999 24 6 5.5386 1.5469 3.0648 25 6 4.8405 1.8499 4.2232 26 7 3.9154 1.0103 4.6575 27 6 1.4943 -0.0534 2.4358 28 1 -0.3634 -1.0234 0.0927 29 1 -0.3634 0.5920 0.8400 30 1 -0.3634 0.4314 -0.9327 31 1 1.7516 -1.7714 -1.2055 32 1 1.6053 -0.2617 -2.1369 33 1 3.8532 0.4371 -1.3573 34 1 3.9995 -1.0727 -0.4259 35 1 7.2195 -0.7999 -2.1924 36 1 2.1197 -2.7434 0.6426 37 1 0.4660 -2.1229 0.9309 38 1 2.5499 -3.0142 2.9303 39 1 0.7658 -3.0951 3.0438 40 1 0.3732 -2.0034 5.1309 41 1 -0.2953 -0.4695 4.4094 42 1 1.8164 -0.4609 6.3922 43 1 1.6644 0.8238 5.1186 44 1 5.7643 0.1029 1.4942 45 1 6.2987 2.2151 2.6879 46 1 5.0501 2.7603 4.7653 47 1 0.4542 0.2425 2.2991 48 1 2.1037 0.8085 2.7074 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172496171.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:27 Heat of formation + Delta-G solvation = 119.175819 kcal Electronic energy + Delta-G solvation = -28341.053109 eV Core-core repulsion = 24819.312653 eV Total energy + Delta-G solvation = -3521.740456 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.04051 -39.78812 -37.97862 -33.96085 -33.32093 -32.55854 -31.93123 -29.89141 -28.45202 -28.36415 -27.28826 -25.16724 -24.21783 -23.09220 -22.84268 -21.82281 -20.92953 -19.21530 -18.73619 -17.30862 -17.22051 -16.12850 -16.06618 -15.79742 -15.47620 -14.52791 -14.48503 -14.41760 -14.27394 -13.78964 -13.58508 -13.38441 -13.08264 -12.68521 -12.54345 -12.14939 -12.04647 -11.91479 -11.73301 -11.57397 -11.26346 -11.23965 -10.97342 -10.79336 -10.73467 -10.65597 -10.46896 -10.41631 -10.26528 -10.11199 -9.96179 -9.59245 -9.18807 -8.88585 -8.77982 -8.47163 -8.22104 -7.79295 -5.89182 -3.88864 1.21103 1.47687 3.38334 3.42623 3.42625 3.45311 4.00807 4.04702 4.35775 4.50526 4.54181 4.63361 4.71113 4.93601 4.95911 5.11807 5.23782 5.26689 5.34284 5.42531 5.47332 5.52424 5.54360 5.55261 5.58569 5.61983 5.68733 5.73390 5.82159 5.84426 5.91886 6.01353 6.13699 6.23603 6.28747 6.39733 6.41858 6.54948 6.59315 6.67388 6.88009 7.04185 7.26251 7.35292 7.45664 7.57675 7.84805 8.07678 8.25042 8.47932 8.57824 9.19142 9.73372 11.22062 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.013868 B = 0.004753 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.497708 B = 5889.615050 C = 7073.463504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.069 3.931 3 H 0.072 0.928 4 C -0.100 4.100 5 C 0.032 3.968 6 C -0.518 4.518 7 H 0.048 0.952 8 C 0.060 3.940 9 N -0.894 5.894 10 Si 0.885 3.115 11 H -0.279 1.279 12 H -0.288 1.288 13 H -0.278 1.278 14 N -0.463 5.463 15 C 0.032 3.968 16 C -0.100 4.100 17 C 0.083 3.917 18 C -0.142 4.142 19 C 0.025 3.975 20 N -0.400 5.400 21 C 0.455 3.545 22 N -0.473 5.473 23 C 0.187 3.813 24 C -0.256 4.256 25 C 0.153 3.847 26 N -0.557 5.557 27 C 0.029 3.971 28 H 0.060 0.940 29 H 0.047 0.953 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.046 0.954 33 H 0.005 0.995 34 H 0.037 0.963 35 H 0.258 0.742 36 H 0.089 0.911 37 H 0.044 0.956 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.099 0.901 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.179 0.821 45 H 0.143 0.857 46 H 0.160 0.840 47 H 0.056 0.944 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.102 3.728 14.515 18.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.040 4.040 3 H 0.090 0.910 4 C -0.138 4.138 5 C -0.005 4.005 6 C -0.556 4.556 7 H 0.067 0.933 8 C -0.141 4.141 9 N -0.534 5.534 10 Si 0.713 3.287 11 H -0.205 1.205 12 H -0.214 1.214 13 H -0.204 1.204 14 N -0.185 5.185 15 C -0.096 4.096 16 C -0.139 4.139 17 C -0.007 4.007 18 C -0.180 4.180 19 C -0.104 4.104 20 N -0.120 5.120 21 C 0.100 3.900 22 N -0.188 5.188 23 C 0.019 3.981 24 C -0.279 4.279 25 C -0.014 4.014 26 N -0.276 5.276 27 C -0.101 4.101 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.024 0.976 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.108 0.892 37 H 0.062 0.938 38 H 0.105 0.895 39 H 0.089 0.911 40 H 0.117 0.883 41 H 0.101 0.899 42 H 0.109 0.891 43 H 0.104 0.896 44 H 0.196 0.804 45 H 0.161 0.839 46 H 0.177 0.823 47 H 0.074 0.926 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.623 2.569 15.103 18.092 hybrid contribution 0.161 0.938 -1.533 1.804 sum -9.463 3.507 13.571 16.912 Atomic orbital electron populations 1.22555 0.99102 1.01702 1.01431 1.22002 0.91028 0.98816 0.92131 0.90986 1.21680 1.00975 0.98261 0.92859 1.18983 0.87954 0.96427 0.97152 1.21294 0.91818 1.34020 1.08477 0.93347 1.24932 0.97079 0.95709 0.96363 1.69933 1.02115 1.44371 1.36953 0.86782 0.77578 0.80355 0.83958 1.20531 1.21422 1.20421 1.65736 1.52332 1.00996 0.99443 1.23202 0.98455 0.91849 0.96121 1.22152 1.02916 0.94808 0.94003 1.22728 0.88359 0.97791 0.91868 1.23321 0.96732 1.01649 0.96297 1.23660 0.89206 0.98212 0.99294 1.65617 1.04914 1.30120 1.11326 1.21684 0.94146 0.86926 0.87293 1.68377 1.07108 1.33363 1.09954 1.23470 0.89248 0.88284 0.97116 1.22822 1.04637 1.01309 0.99114 1.22861 0.89147 0.96728 0.92633 1.68168 1.19936 1.04343 1.35179 1.23307 0.98902 0.96037 0.91836 0.92167 0.93435 0.92211 0.93335 0.93557 0.97621 0.94479 0.93279 0.89229 0.93812 0.89486 0.91139 0.88265 0.89918 0.89095 0.89613 0.80400 0.83950 0.82250 0.92645 0.91573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.63 8.46 37.15 0.31 -2.32 16 2 C 0.07 1.19 2.48 -67.72 -0.17 1.02 16 3 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 4 C -0.10 -2.06 4.51 -26.74 -0.12 -2.18 16 5 C 0.03 0.82 4.86 -27.89 -0.14 0.68 16 6 C -0.52 -14.66 9.11 -34.44 -0.31 -14.98 16 7 H 0.05 1.35 7.74 -52.49 -0.41 0.94 16 8 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 9 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 10 Si 0.88 21.82 29.54 -169.99 -5.02 16.80 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 N -0.46 -7.78 4.01 -222.16 -0.89 -8.67 16 15 C 0.03 0.49 5.27 -2.04 -0.01 0.48 16 16 C -0.10 -1.38 6.64 -25.64 -0.17 -1.55 16 17 C 0.08 1.10 1.01 -137.24 -0.14 0.96 16 18 C -0.14 -1.41 7.63 -26.56 -0.20 -1.62 16 19 C 0.02 0.29 6.95 -8.91 -0.06 0.22 16 20 N -0.40 -5.92 6.38 -173.15 -1.10 -7.02 16 21 C 0.46 7.49 4.94 -322.80 -1.60 5.89 16 22 N -0.47 -8.62 8.68 -13.93 -0.12 -8.74 16 23 C 0.19 3.20 11.30 -17.23 -0.19 3.00 16 24 C -0.26 -3.51 10.16 -39.31 -0.40 -3.91 16 25 C 0.15 1.98 11.30 -17.23 -0.19 1.79 16 26 N -0.56 -8.39 8.73 -13.93 -0.12 -8.51 16 27 C 0.03 0.42 4.54 -2.48 -0.01 0.41 16 28 H 0.06 0.81 5.77 -51.93 -0.30 0.51 16 29 H 0.05 0.60 6.26 -51.93 -0.33 0.27 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.99 6.76 -51.93 -0.35 0.64 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 34 H 0.04 1.02 7.75 -51.93 -0.40 0.62 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.09 1.59 7.58 -51.93 -0.39 1.20 16 37 H 0.04 0.61 5.48 -51.92 -0.28 0.33 16 38 H 0.09 1.37 8.11 -51.93 -0.42 0.95 16 39 H 0.07 0.79 7.94 -51.93 -0.41 0.37 16 40 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.08 0.70 8.05 -51.93 -0.42 0.29 16 42 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.09 1.04 7.18 -51.93 -0.37 0.67 16 44 H 0.18 3.28 8.06 -52.48 -0.42 2.86 16 45 H 0.14 1.59 8.06 -52.49 -0.42 1.16 16 46 H 0.16 1.47 8.06 -52.48 -0.42 1.05 16 47 H 0.06 0.74 5.52 -51.93 -0.29 0.45 16 48 H 0.07 1.10 6.30 -51.93 -0.33 0.77 16 LS Contribution 368.34 15.07 5.55 5.55 Total: -1.00 -31.51 368.34 -12.11 -43.62 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -7.64 Total: 3.05 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -3.50 Total: -10.47 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: -1.50 Total: -58.55 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.51 -12.11 -43.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172496171.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.793 kcal (2) G-P(sol) polarization free energy of solvation -31.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds