Wall clock time and date at job start Tue Mar 31 2020 11:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.46843 * 2 1 4 4 C 1.52997 * 109.47503 * 240.00247 * 2 1 3 5 5 C 1.52992 * 109.47463 * 175.00009 * 4 2 1 6 6 C 1.50701 * 109.47072 * 179.97438 * 5 4 2 7 7 H 1.08001 * 120.00267 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99721 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00409 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99672 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47314 * 60.00074 * 10 8 6 12 12 H 1.48500 * 109.46949 * 179.97438 * 10 8 6 13 13 H 1.48492 * 109.47267 * 299.99786 * 10 8 6 14 14 N 1.46902 * 109.47223 * 119.99519 * 2 1 3 15 15 C 1.48626 * 110.99609 * 58.07726 * 14 2 1 16 16 C 1.54585 * 104.63594 * 201.35990 * 15 14 2 17 17 C 1.53489 * 104.73509 * 23.72549 * 16 15 14 18 18 C 1.52654 * 115.47666 * 128.80354 * 17 16 15 19 19 C 1.53669 * 83.30928 * 143.41321 * 18 17 16 20 20 N 1.46560 * 115.53599 * 230.59673 * 17 16 15 21 21 C 1.38409 * 110.99681 * 104.10248 * 20 17 16 22 22 N 1.32486 * 119.21980 * 299.60303 * 21 20 17 23 23 C 1.32276 * 120.74026 * 180.27989 * 22 21 20 24 24 C 1.38604 * 119.20082 * 0.02562 * 23 22 21 25 25 C 1.38605 * 118.55470 * 359.97438 * 24 23 22 26 26 N 1.32270 * 119.20003 * 0.02562 * 25 24 23 27 27 C 1.48751 * 111.00263 * 302.47825 * 14 2 1 28 28 H 1.09000 * 109.47490 * 185.17646 * 1 2 3 29 29 H 1.09004 * 109.47497 * 305.17468 * 1 2 3 30 30 H 1.09003 * 109.47190 * 65.17744 * 1 2 3 31 31 H 1.09003 * 109.46510 * 295.00115 * 4 2 1 32 32 H 1.09000 * 109.46883 * 54.99111 * 4 2 1 33 33 H 1.09003 * 109.47344 * 299.99596 * 5 4 2 34 34 H 1.09000 * 109.47804 * 59.99666 * 5 4 2 35 35 H 0.96998 * 120.00291 * 179.97438 * 9 8 6 36 36 H 1.08994 * 110.40920 * 82.56678 * 15 14 2 37 37 H 1.09008 * 110.50343 * 320.19454 * 15 14 2 38 38 H 1.08997 * 110.38712 * 264.91315 * 16 15 14 39 39 H 1.09004 * 110.48505 * 142.58586 * 16 15 14 40 40 H 1.08997 * 114.21117 * 29.83834 * 18 17 16 41 41 H 1.08999 * 114.21613 * 256.98495 * 18 17 16 42 42 H 1.08995 * 113.44917 * 219.90975 * 19 18 17 43 43 H 1.09000 * 113.44357 * 89.53249 * 19 18 17 44 44 H 1.08006 * 120.39841 * 180.02562 * 23 22 21 45 45 H 1.07994 * 120.72158 * 180.02562 * 24 23 22 46 46 H 1.08003 * 120.40099 * 179.97438 * 25 24 23 47 47 H 1.09002 * 110.44813 * 39.63608 * 27 14 2 48 48 H 1.08998 * 110.44946 * 277.09507 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3136 6 6 4.0672 -1.3241 -2.5438 7 1 3.3688 -1.8052 -3.2126 8 6 5.4184 -1.3603 -2.8155 9 7 6.2689 -0.7741 -2.0015 10 14 6.0412 -2.2421 -4.3400 11 1 5.4486 -1.6176 -5.5499 12 1 7.5211 -2.1362 -4.4032 13 1 5.6491 -3.6731 -4.2790 14 7 2.0196 -0.6924 1.1995 15 6 1.5054 -2.0857 1.2574 16 6 1.6167 -2.4815 2.7476 17 6 1.6046 -1.1481 3.5076 18 6 0.5947 -1.0516 4.6483 19 6 1.7114 -0.2447 5.3291 20 7 2.6826 -0.9676 4.4840 21 6 3.6532 -0.1087 3.9980 22 7 4.3020 -0.4278 2.8879 23 6 5.2390 0.3682 2.3999 24 6 5.5386 1.5469 3.0648 25 6 4.8405 1.8499 4.2232 26 7 3.9154 1.0103 4.6575 27 6 1.4943 -0.0534 2.4358 28 1 -0.3634 -1.0234 0.0927 29 1 -0.3634 0.5920 0.8400 30 1 -0.3634 0.4314 -0.9327 31 1 1.7516 -1.7714 -1.2055 32 1 1.6053 -0.2617 -2.1369 33 1 3.8532 0.4371 -1.3573 34 1 3.9995 -1.0727 -0.4259 35 1 7.2195 -0.7999 -2.1924 36 1 2.1197 -2.7434 0.6426 37 1 0.4660 -2.1229 0.9309 38 1 2.5499 -3.0142 2.9303 39 1 0.7658 -3.0951 3.0438 40 1 0.3732 -2.0034 5.1309 41 1 -0.2953 -0.4695 4.4094 42 1 1.8164 -0.4609 6.3922 43 1 1.6644 0.8238 5.1186 44 1 5.7643 0.1029 1.4942 45 1 6.2987 2.2151 2.6879 46 1 5.0501 2.7603 4.7653 47 1 0.4542 0.2425 2.2991 48 1 2.1037 0.8085 2.7074 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172496171.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:26 Heat of formation + Delta-G solvation = 98.672329 kcal Electronic energy + Delta-G solvation = -28341.942207 eV Core-core repulsion = 24819.312653 eV Total energy + Delta-G solvation = -3522.629554 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.11938 -40.94756 -39.24391 -35.70967 -34.61670 -34.17736 -33.15629 -31.55751 -29.76330 -29.43475 -28.39903 -27.00059 -25.45657 -24.39586 -23.96309 -22.94813 -22.75795 -20.39586 -20.00247 -18.51044 -18.40181 -18.21907 -17.23850 -17.08367 -16.58157 -16.50202 -15.72857 -15.51337 -15.40059 -15.01258 -14.76544 -14.73182 -14.44450 -14.29876 -14.12055 -13.44128 -13.35107 -13.19777 -13.01912 -12.83726 -12.80914 -12.65421 -12.39433 -12.29387 -12.18392 -11.96984 -11.81536 -11.76169 -11.65489 -11.44221 -11.27777 -11.19431 -11.05736 -10.88864 -10.45701 -9.99338 -9.58679 -9.02781 -8.11565 -6.20754 0.03849 0.29232 1.39099 1.41781 1.49080 2.36628 2.43910 2.88325 2.96880 3.20464 3.21357 3.49790 3.57849 3.62320 3.79099 3.85676 4.00318 4.14454 4.20203 4.28034 4.30373 4.34028 4.34864 4.41648 4.44567 4.54700 4.65663 4.73359 4.75961 4.81511 4.85889 4.92092 4.95115 5.02419 5.03492 5.12203 5.18245 5.19241 5.28922 5.39583 5.45117 5.46641 5.60142 5.89041 5.91311 6.05367 6.09947 6.28792 6.32738 6.36466 6.97084 7.28213 7.46223 8.99179 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.013868 B = 0.004753 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.497708 B = 5889.615050 C = 7073.463504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.076 3.924 3 H 0.051 0.949 4 C -0.089 4.089 5 C 0.049 3.951 6 C -0.544 4.544 7 H 0.051 0.949 8 C 0.006 3.994 9 N -0.924 5.924 10 Si 0.954 3.046 11 H -0.269 1.269 12 H -0.283 1.283 13 H -0.271 1.271 14 N -0.491 5.491 15 C 0.034 3.966 16 C -0.094 4.094 17 C 0.077 3.923 18 C -0.116 4.116 19 C 0.025 3.975 20 N -0.421 5.421 21 C 0.447 3.553 22 N -0.508 5.508 23 C 0.159 3.841 24 C -0.248 4.248 25 C 0.160 3.840 26 N -0.559 5.559 27 C 0.039 3.961 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.048 0.952 33 H -0.028 1.028 34 H 0.006 0.994 35 H 0.260 0.740 36 H 0.053 0.947 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.105 0.895 40 H 0.118 0.882 41 H 0.108 0.892 42 H 0.103 0.897 43 H 0.080 0.920 44 H 0.146 0.854 45 H 0.168 0.832 46 H 0.206 0.794 47 H 0.077 0.923 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.437 4.018 15.675 20.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.033 4.033 3 H 0.070 0.930 4 C -0.126 4.126 5 C 0.012 3.988 6 C -0.582 4.582 7 H 0.069 0.931 8 C -0.192 4.192 9 N -0.564 5.564 10 Si 0.780 3.220 11 H -0.194 1.194 12 H -0.209 1.209 13 H -0.196 1.196 14 N -0.214 5.214 15 C -0.093 4.093 16 C -0.132 4.132 17 C -0.013 4.013 18 C -0.154 4.154 19 C -0.102 4.102 20 N -0.141 5.141 21 C 0.091 3.909 22 N -0.224 5.224 23 C -0.009 4.009 24 C -0.271 4.271 25 C -0.007 4.007 26 N -0.278 5.278 27 C -0.090 4.090 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.066 0.934 33 H -0.009 1.009 34 H 0.024 0.976 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.123 0.877 40 H 0.137 0.863 41 H 0.126 0.874 42 H 0.122 0.878 43 H 0.098 0.902 44 H 0.163 0.837 45 H 0.185 0.815 46 H 0.222 0.778 47 H 0.095 0.905 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.974 2.855 16.261 20.395 hybrid contribution 0.980 0.877 -1.868 2.284 sum -10.994 3.731 14.393 18.492 Atomic orbital electron populations 1.22405 0.95621 1.02789 1.02691 1.21756 0.93634 0.97003 0.90913 0.93044 1.21479 0.97177 0.98876 0.95099 1.18709 0.91557 0.93531 0.95048 1.21716 0.92470 1.34569 1.09421 0.93089 1.25828 0.97331 0.96397 0.99636 1.70083 1.02408 1.45256 1.38680 0.85672 0.77073 0.79253 0.80034 1.19401 1.20854 1.19635 1.65596 1.53844 1.01840 1.00137 1.23131 0.98681 0.90513 0.97017 1.22118 1.02813 0.95453 0.92846 1.22855 0.89545 0.96548 0.92347 1.23336 0.96247 1.02536 0.93306 1.23738 0.88881 0.97949 0.99665 1.65670 1.05419 1.30604 1.12394 1.21907 0.94433 0.87632 0.86887 1.68240 1.08097 1.34586 1.11489 1.23175 0.90233 0.90297 0.97158 1.23003 1.04977 1.00047 0.99038 1.23598 0.87603 0.97441 0.92037 1.68276 1.20407 1.04138 1.34953 1.23218 0.99221 0.95556 0.91050 0.91170 0.91404 0.91596 0.93280 0.93365 1.00923 0.97576 0.93129 0.92857 0.91572 0.92475 0.87718 0.86337 0.87406 0.87847 0.90169 0.83673 0.81464 0.77764 0.90512 0.93898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.52 8.46 71.98 0.61 -3.91 16 2 C 0.08 2.66 2.48 44.91 0.11 2.77 16 3 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 4 C -0.09 -3.78 4.51 30.59 0.14 -3.64 16 5 C 0.05 2.67 4.86 29.85 0.15 2.81 16 6 C -0.54 -32.01 9.11 25.60 0.23 -31.78 16 7 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 8 C 0.01 0.36 5.46 84.65 0.46 0.82 16 9 N -0.92 -56.92 13.29 21.45 0.28 -56.64 16 10 Si 0.95 45.58 29.54 68.60 2.03 47.60 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 12 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 13 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 14 N -0.49 -16.99 4.01 -856.80 -3.43 -20.42 16 15 C 0.03 1.07 5.27 86.51 0.46 1.52 16 16 C -0.09 -2.51 6.64 31.30 0.21 -2.31 16 17 C 0.08 1.94 1.01 0.06 0.00 1.94 16 18 C -0.12 -1.88 7.63 30.70 0.23 -1.64 16 19 C 0.03 0.52 6.95 82.60 0.57 1.10 16 20 N -0.42 -12.17 6.38 -701.72 -4.47 -16.65 16 21 C 0.45 14.93 4.94 261.48 1.29 16.23 16 22 N -0.51 -19.79 8.68 -197.98 -1.72 -21.51 16 23 C 0.16 5.93 11.30 84.71 0.96 6.88 16 24 C -0.25 -6.95 10.16 22.44 0.23 -6.72 16 25 C 0.16 3.95 11.30 84.71 0.96 4.91 16 26 N -0.56 -16.40 8.73 -197.98 -1.73 -18.13 16 27 C 0.04 1.10 4.54 86.15 0.39 1.49 16 28 H 0.07 1.67 5.77 -2.39 -0.01 1.66 16 29 H 0.07 1.48 6.26 -2.39 -0.01 1.47 16 30 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.05 2.07 6.76 -2.39 -0.02 2.05 16 32 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 33 H -0.03 -1.67 8.14 -2.39 -0.02 -1.69 16 34 H 0.01 0.35 7.75 -2.39 -0.02 0.33 16 35 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 36 H 0.05 2.01 7.58 -2.39 -0.02 2.00 16 37 H 0.07 1.74 5.48 -2.38 -0.01 1.72 16 38 H 0.06 1.87 8.11 -2.39 -0.02 1.85 16 39 H 0.10 2.04 7.94 -2.39 -0.02 2.02 16 40 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.11 1.27 8.05 -2.39 -0.02 1.25 16 42 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.08 1.77 7.18 -2.39 -0.02 1.75 16 44 H 0.15 6.18 8.06 -2.91 -0.02 6.16 16 45 H 0.17 3.69 8.06 -2.91 -0.02 3.67 16 46 H 0.21 3.09 8.06 -2.91 -0.02 3.07 16 47 H 0.08 1.81 5.52 -2.39 -0.01 1.80 16 48 H 0.04 1.43 6.30 -2.39 -0.02 1.41 16 Total: -1.00 -73.47 368.34 -1.10 -74.57 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 0.94 Total: 20.70 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: 7.00 Total: -9.53 kcal Atomic # 7 Polarization: -122.28 SS G_CDS: -11.07 Total: -133.34 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Total: -73.47 -1.10 -74.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172496171.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.241 kcal (2) G-P(sol) polarization free energy of solvation -73.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds