Wall clock time and date at job start Tue Mar 31 2020 11:52:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.09003 * 109.46843 * 2 1
4 4 C 1.52997 * 109.47503 * 240.00247 * 2 1 3
5 5 C 1.52992 * 109.47463 * 175.00009 * 4 2 1
6 6 C 1.50701 * 109.47072 * 179.97438 * 5 4 2
7 7 H 1.08001 * 120.00267 * 359.97438 * 6 5 4
8 8 C 1.37877 * 119.99721 * 179.97438 * 6 5 4
9 9 N 1.31515 * 120.00409 * 359.97438 * 8 6 5
10 10 Si 1.86803 * 119.99672 * 179.97438 * 8 6 5
11 11 H 1.48497 * 109.47314 * 60.00074 * 10 8 6
12 12 H 1.48500 * 109.46949 * 179.97438 * 10 8 6
13 13 H 1.48492 * 109.47267 * 299.99786 * 10 8 6
14 14 N 1.46902 * 109.47223 * 119.99519 * 2 1 3
15 15 C 1.48626 * 110.99609 * 58.07726 * 14 2 1
16 16 C 1.54585 * 104.63594 * 201.35990 * 15 14 2
17 17 C 1.53489 * 104.73509 * 23.72549 * 16 15 14
18 18 C 1.52654 * 115.47666 * 128.80354 * 17 16 15
19 19 C 1.53669 * 83.30928 * 143.41321 * 18 17 16
20 20 N 1.46560 * 115.53599 * 230.59673 * 17 16 15
21 21 C 1.38409 * 110.99681 * 104.10248 * 20 17 16
22 22 N 1.32486 * 119.21980 * 299.60303 * 21 20 17
23 23 C 1.32276 * 120.74026 * 180.27989 * 22 21 20
24 24 C 1.38604 * 119.20082 * 0.02562 * 23 22 21
25 25 C 1.38605 * 118.55470 * 359.97438 * 24 23 22
26 26 N 1.32270 * 119.20003 * 0.02562 * 25 24 23
27 27 C 1.48751 * 111.00263 * 302.47825 * 14 2 1
28 28 H 1.09000 * 109.47490 * 185.17646 * 1 2 3
29 29 H 1.09004 * 109.47497 * 305.17468 * 1 2 3
30 30 H 1.09003 * 109.47190 * 65.17744 * 1 2 3
31 31 H 1.09003 * 109.46510 * 295.00115 * 4 2 1
32 32 H 1.09000 * 109.46883 * 54.99111 * 4 2 1
33 33 H 1.09003 * 109.47344 * 299.99596 * 5 4 2
34 34 H 1.09000 * 109.47804 * 59.99666 * 5 4 2
35 35 H 0.96998 * 120.00291 * 179.97438 * 9 8 6
36 36 H 1.08994 * 110.40920 * 82.56678 * 15 14 2
37 37 H 1.09008 * 110.50343 * 320.19454 * 15 14 2
38 38 H 1.08997 * 110.38712 * 264.91315 * 16 15 14
39 39 H 1.09004 * 110.48505 * 142.58586 * 16 15 14
40 40 H 1.08997 * 114.21117 * 29.83834 * 18 17 16
41 41 H 1.08999 * 114.21613 * 256.98495 * 18 17 16
42 42 H 1.08995 * 113.44917 * 219.90975 * 19 18 17
43 43 H 1.09000 * 113.44357 * 89.53249 * 19 18 17
44 44 H 1.08006 * 120.39841 * 180.02562 * 23 22 21
45 45 H 1.07994 * 120.72158 * 180.02562 * 24 23 22
46 46 H 1.08003 * 120.40099 * 179.97438 * 25 24 23
47 47 H 1.09002 * 110.44813 * 39.63608 * 27 14 2
48 48 H 1.08998 * 110.44946 * 277.09507 * 27 14 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8932 1.0277 0.0000
4 6 2.0400 -0.7212 -1.2492
5 6 3.5648 -0.6132 -1.3136
6 6 4.0672 -1.3241 -2.5438
7 1 3.3688 -1.8052 -3.2126
8 6 5.4184 -1.3603 -2.8155
9 7 6.2689 -0.7741 -2.0015
10 14 6.0412 -2.2421 -4.3400
11 1 5.4486 -1.6176 -5.5499
12 1 7.5211 -2.1362 -4.4032
13 1 5.6491 -3.6731 -4.2790
14 7 2.0196 -0.6924 1.1995
15 6 1.5054 -2.0857 1.2574
16 6 1.6167 -2.4815 2.7476
17 6 1.6046 -1.1481 3.5076
18 6 0.5947 -1.0516 4.6483
19 6 1.7114 -0.2447 5.3291
20 7 2.6826 -0.9676 4.4840
21 6 3.6532 -0.1087 3.9980
22 7 4.3020 -0.4278 2.8879
23 6 5.2390 0.3682 2.3999
24 6 5.5386 1.5469 3.0648
25 6 4.8405 1.8499 4.2232
26 7 3.9154 1.0103 4.6575
27 6 1.4943 -0.0534 2.4358
28 1 -0.3634 -1.0234 0.0927
29 1 -0.3634 0.5920 0.8400
30 1 -0.3634 0.4314 -0.9327
31 1 1.7516 -1.7714 -1.2055
32 1 1.6053 -0.2617 -2.1369
33 1 3.8532 0.4371 -1.3573
34 1 3.9995 -1.0727 -0.4259
35 1 7.2195 -0.7999 -2.1924
36 1 2.1197 -2.7434 0.6426
37 1 0.4660 -2.1229 0.9309
38 1 2.5499 -3.0142 2.9303
39 1 0.7658 -3.0951 3.0438
40 1 0.3732 -2.0034 5.1309
41 1 -0.2953 -0.4695 4.4094
42 1 1.8164 -0.4609 6.3922
43 1 1.6644 0.8238 5.1186
44 1 5.7643 0.1029 1.4942
45 1 6.2987 2.2151 2.6879
46 1 5.0501 2.7603 4.7653
47 1 0.4542 0.2425 2.2991
48 1 2.1037 0.8085 2.7074
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001172496171.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:52:26
Heat of formation + Delta-G solvation = 98.672329 kcal
Electronic energy + Delta-G solvation = -28341.942207 eV
Core-core repulsion = 24819.312653 eV
Total energy + Delta-G solvation = -3522.629554 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 316.196 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-43.11938 -40.94756 -39.24391 -35.70967 -34.61670 -34.17736 -33.15629 -31.55751
-29.76330 -29.43475 -28.39903 -27.00059 -25.45657 -24.39586 -23.96309 -22.94813
-22.75795 -20.39586 -20.00247 -18.51044 -18.40181 -18.21907 -17.23850 -17.08367
-16.58157 -16.50202 -15.72857 -15.51337 -15.40059 -15.01258 -14.76544 -14.73182
-14.44450 -14.29876 -14.12055 -13.44128 -13.35107 -13.19777 -13.01912 -12.83726
-12.80914 -12.65421 -12.39433 -12.29387 -12.18392 -11.96984 -11.81536 -11.76169
-11.65489 -11.44221 -11.27777 -11.19431 -11.05736 -10.88864 -10.45701 -9.99338
-9.58679 -9.02781 -8.11565 -6.20754 0.03849 0.29232 1.39099 1.41781
1.49080 2.36628 2.43910 2.88325 2.96880 3.20464 3.21357 3.49790
3.57849 3.62320 3.79099 3.85676 4.00318 4.14454 4.20203 4.28034
4.30373 4.34028 4.34864 4.41648 4.44567 4.54700 4.65663 4.73359
4.75961 4.81511 4.85889 4.92092 4.95115 5.02419 5.03492 5.12203
5.18245 5.19241 5.28922 5.39583 5.45117 5.46641 5.60142 5.89041
5.91311 6.05367 6.09947 6.28792 6.32738 6.36466 6.97084 7.28213
7.46223 8.99179
Molecular weight = 316.20amu
Principal moments of inertia in cm(-1)
A = 0.013868 B = 0.004753 C = 0.003958
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2018.497708 B = 5889.615050 C = 7073.463504
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.177 4.177
2 C 0.076 3.924
3 H 0.051 0.949
4 C -0.089 4.089
5 C 0.049 3.951
6 C -0.544 4.544
7 H 0.051 0.949
8 C 0.006 3.994
9 N -0.924 5.924
10 Si 0.954 3.046
11 H -0.269 1.269
12 H -0.283 1.283
13 H -0.271 1.271
14 N -0.491 5.491
15 C 0.034 3.966
16 C -0.094 4.094
17 C 0.077 3.923
18 C -0.116 4.116
19 C 0.025 3.975
20 N -0.421 5.421
21 C 0.447 3.553
22 N -0.508 5.508
23 C 0.159 3.841
24 C -0.248 4.248
25 C 0.160 3.840
26 N -0.559 5.559
27 C 0.039 3.961
28 H 0.070 0.930
29 H 0.067 0.933
30 H 0.065 0.935
31 H 0.048 0.952
32 H 0.048 0.952
33 H -0.028 1.028
34 H 0.006 0.994
35 H 0.260 0.740
36 H 0.053 0.947
37 H 0.066 0.934
38 H 0.056 0.944
39 H 0.105 0.895
40 H 0.118 0.882
41 H 0.108 0.892
42 H 0.103 0.897
43 H 0.080 0.920
44 H 0.146 0.854
45 H 0.168 0.832
46 H 0.206 0.794
47 H 0.077 0.923
48 H 0.043 0.957
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.437 4.018 15.675 20.409
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.235 4.235
2 C -0.033 4.033
3 H 0.070 0.930
4 C -0.126 4.126
5 C 0.012 3.988
6 C -0.582 4.582
7 H 0.069 0.931
8 C -0.192 4.192
9 N -0.564 5.564
10 Si 0.780 3.220
11 H -0.194 1.194
12 H -0.209 1.209
13 H -0.196 1.196
14 N -0.214 5.214
15 C -0.093 4.093
16 C -0.132 4.132
17 C -0.013 4.013
18 C -0.154 4.154
19 C -0.102 4.102
20 N -0.141 5.141
21 C 0.091 3.909
22 N -0.224 5.224
23 C -0.009 4.009
24 C -0.271 4.271
25 C -0.007 4.007
26 N -0.278 5.278
27 C -0.090 4.090
28 H 0.088 0.912
29 H 0.086 0.914
30 H 0.084 0.916
31 H 0.067 0.933
32 H 0.066 0.934
33 H -0.009 1.009
34 H 0.024 0.976
35 H 0.069 0.931
36 H 0.071 0.929
37 H 0.084 0.916
38 H 0.075 0.925
39 H 0.123 0.877
40 H 0.137 0.863
41 H 0.126 0.874
42 H 0.122 0.878
43 H 0.098 0.902
44 H 0.163 0.837
45 H 0.185 0.815
46 H 0.222 0.778
47 H 0.095 0.905
48 H 0.061 0.939
Dipole moment (debyes) X Y Z Total
from point charges -11.974 2.855 16.261 20.395
hybrid contribution 0.980 0.877 -1.868 2.284
sum -10.994 3.731 14.393 18.492
Atomic orbital electron populations
1.22405 0.95621 1.02789 1.02691 1.21756 0.93634 0.97003 0.90913
0.93044 1.21479 0.97177 0.98876 0.95099 1.18709 0.91557 0.93531
0.95048 1.21716 0.92470 1.34569 1.09421 0.93089 1.25828 0.97331
0.96397 0.99636 1.70083 1.02408 1.45256 1.38680 0.85672 0.77073
0.79253 0.80034 1.19401 1.20854 1.19635 1.65596 1.53844 1.01840
1.00137 1.23131 0.98681 0.90513 0.97017 1.22118 1.02813 0.95453
0.92846 1.22855 0.89545 0.96548 0.92347 1.23336 0.96247 1.02536
0.93306 1.23738 0.88881 0.97949 0.99665 1.65670 1.05419 1.30604
1.12394 1.21907 0.94433 0.87632 0.86887 1.68240 1.08097 1.34586
1.11489 1.23175 0.90233 0.90297 0.97158 1.23003 1.04977 1.00047
0.99038 1.23598 0.87603 0.97441 0.92037 1.68276 1.20407 1.04138
1.34953 1.23218 0.99221 0.95556 0.91050 0.91170 0.91404 0.91596
0.93280 0.93365 1.00923 0.97576 0.93129 0.92857 0.91572 0.92475
0.87718 0.86337 0.87406 0.87847 0.90169 0.83673 0.81464 0.77764
0.90512 0.93898
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -4.52 8.46 71.98 0.61 -3.91 16
2 C 0.08 2.66 2.48 44.91 0.11 2.77 16
3 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16
4 C -0.09 -3.78 4.51 30.59 0.14 -3.64 16
5 C 0.05 2.67 4.86 29.85 0.15 2.81 16
6 C -0.54 -32.01 9.11 25.60 0.23 -31.78 16
7 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16
8 C 0.01 0.36 5.46 84.65 0.46 0.82 16
9 N -0.92 -56.92 13.29 21.45 0.28 -56.64 16
10 Si 0.95 45.58 29.54 68.60 2.03 47.60 16
11 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16
12 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16
13 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16
14 N -0.49 -16.99 4.01 -856.80 -3.43 -20.42 16
15 C 0.03 1.07 5.27 86.51 0.46 1.52 16
16 C -0.09 -2.51 6.64 31.30 0.21 -2.31 16
17 C 0.08 1.94 1.01 0.06 0.00 1.94 16
18 C -0.12 -1.88 7.63 30.70 0.23 -1.64 16
19 C 0.03 0.52 6.95 82.60 0.57 1.10 16
20 N -0.42 -12.17 6.38 -701.72 -4.47 -16.65 16
21 C 0.45 14.93 4.94 261.48 1.29 16.23 16
22 N -0.51 -19.79 8.68 -197.98 -1.72 -21.51 16
23 C 0.16 5.93 11.30 84.71 0.96 6.88 16
24 C -0.25 -6.95 10.16 22.44 0.23 -6.72 16
25 C 0.16 3.95 11.30 84.71 0.96 4.91 16
26 N -0.56 -16.40 8.73 -197.98 -1.73 -18.13 16
27 C 0.04 1.10 4.54 86.15 0.39 1.49 16
28 H 0.07 1.67 5.77 -2.39 -0.01 1.66 16
29 H 0.07 1.48 6.26 -2.39 -0.01 1.47 16
30 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16
31 H 0.05 2.07 6.76 -2.39 -0.02 2.05 16
32 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16
33 H -0.03 -1.67 8.14 -2.39 -0.02 -1.69 16
34 H 0.01 0.35 7.75 -2.39 -0.02 0.33 16
35 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16
36 H 0.05 2.01 7.58 -2.39 -0.02 2.00 16
37 H 0.07 1.74 5.48 -2.38 -0.01 1.72 16
38 H 0.06 1.87 8.11 -2.39 -0.02 1.85 16
39 H 0.10 2.04 7.94 -2.39 -0.02 2.02 16
40 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16
41 H 0.11 1.27 8.05 -2.39 -0.02 1.25 16
42 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16
43 H 0.08 1.77 7.18 -2.39 -0.02 1.75 16
44 H 0.15 6.18 8.06 -2.91 -0.02 6.16 16
45 H 0.17 3.69 8.06 -2.91 -0.02 3.67 16
46 H 0.21 3.09 8.06 -2.91 -0.02 3.07 16
47 H 0.08 1.81 5.52 -2.39 -0.01 1.80 16
48 H 0.04 1.43 6.30 -2.39 -0.02 1.41 16
Total: -1.00 -73.47 368.34 -1.10 -74.57
By element:
Atomic # 1 Polarization: 19.75 SS G_CDS: 0.94 Total: 20.70 kcal
Atomic # 6 Polarization: -16.52 SS G_CDS: 7.00 Total: -9.53 kcal
Atomic # 7 Polarization: -122.28 SS G_CDS: -11.07 Total: -133.34 kcal
Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal
Total: -73.47 -1.10 -74.57 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001172496171.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 173.241 kcal
(2) G-P(sol) polarization free energy of solvation -73.468 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.773 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.101 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.568 kcal
(6) G-S(sol) free energy of system = (1) + (5) 98.672 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds