Wall clock time and date at job start Tue Mar 31 2020 12:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38307 * 119.96046 * 2 1 4 4 C 1.38272 * 120.14783 * 179.97438 * 3 2 1 5 5 C 1.38128 * 120.07531 * 359.75167 * 4 3 2 6 6 C 1.38895 * 119.92330 * 0.52138 * 5 4 3 7 7 N 1.39672 * 120.07368 * 179.74523 * 6 5 4 8 8 C 1.46961 * 110.99444 * 113.05785 * 7 6 5 9 9 C 1.53052 * 109.36345 * 176.81263 * 8 7 6 10 10 N 1.46956 * 109.36458 * 58.40067 * 9 8 7 11 11 C 1.46898 * 110.99840 * 176.81380 * 10 9 8 12 12 H 1.09005 * 109.47216 * 299.99645 * 11 10 9 13 13 C 1.52996 * 109.47287 * 60.00392 * 11 10 9 14 14 C 1.53001 * 109.46782 * 180.02562 * 11 10 9 15 15 C 1.53004 * 109.47489 * 64.99791 * 14 11 10 16 16 C 1.50700 * 109.47377 * 179.97438 * 15 14 11 17 17 H 1.08001 * 119.99663 * 0.02562 * 16 15 14 18 18 C 1.37872 * 120.00266 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99809 * 359.97438 * 18 16 15 20 20 Si 1.86792 * 120.00283 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47181 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47533 * 119.99766 * 20 18 16 23 23 H 1.48502 * 109.46938 * 239.99894 * 20 18 16 24 24 C 1.46961 * 110.88132 * 300.67880 * 10 9 8 25 25 C 1.46956 * 111.00203 * 349.26399 * 7 6 5 26 26 C 1.38082 * 119.96370 * 180.02562 * 2 1 3 27 27 C 1.50698 * 120.03871 * 359.97438 * 26 2 1 28 28 H 1.08998 * 109.47079 * 269.97403 * 1 2 3 29 29 H 1.08996 * 109.46778 * 29.97981 * 1 2 3 30 30 H 1.09000 * 109.46837 * 149.97606 * 1 2 3 31 31 H 1.07998 * 119.92877 * 359.97438 * 3 2 1 32 32 H 1.08002 * 119.96148 * 179.97438 * 4 3 2 33 33 H 1.07991 * 120.03778 * 180.27009 * 5 4 3 34 34 H 1.09004 * 109.48773 * 56.84647 * 8 7 6 35 35 H 1.08996 * 109.50964 * 296.79304 * 8 7 6 36 36 H 1.08993 * 109.48860 * 178.36940 * 9 8 7 37 37 H 1.09001 * 109.48536 * 298.43466 * 9 8 7 38 38 H 1.08994 * 109.47590 * 59.99940 * 13 11 10 39 39 H 1.09008 * 109.47089 * 180.02562 * 13 11 10 40 40 H 1.08999 * 109.46809 * 299.99601 * 13 11 10 41 41 H 1.09003 * 109.47252 * 184.99702 * 14 11 10 42 42 H 1.08994 * 109.47203 * 304.99540 * 14 11 10 43 43 H 1.08993 * 109.46818 * 300.00207 * 15 14 11 44 44 H 1.09002 * 109.46511 * 59.99809 * 15 14 11 45 45 H 0.97000 * 120.00341 * 179.97438 * 19 18 16 46 46 H 1.08996 * 109.49194 * 299.35745 * 24 10 9 47 47 H 1.08991 * 109.48935 * 179.28388 * 24 10 9 48 48 H 1.09004 * 109.48303 * 303.15101 * 25 7 6 49 49 H 1.08997 * 109.49225 * 63.21094 * 25 7 6 50 50 H 1.09002 * 109.47047 * 275.69733 * 27 26 2 51 51 H 1.09000 * 109.47040 * 35.69076 * 27 26 2 52 52 H 1.09004 * 109.47307 * 155.69439 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1982 0.0000 4 6 3.5804 1.2028 0.0005 5 6 4.2765 0.0097 0.0063 6 6 3.5860 -1.1954 0.0005 7 7 4.2868 -2.4036 0.0009 8 6 4.0806 -3.1315 1.2608 9 6 4.7980 -4.4816 1.1902 10 7 6.2293 -4.2604 0.9413 11 6 6.9663 -5.5311 0.9418 12 1 6.8511 -6.0176 1.9104 13 6 6.4127 -6.4421 -0.1557 14 6 8.4494 -5.2606 0.6807 15 6 9.0329 -4.4538 1.8424 16 6 10.4939 -4.1878 1.5855 17 1 10.9595 -4.5570 0.6837 18 6 11.2361 -3.4733 2.5018 19 7 10.6689 -3.0234 3.5998 20 14 13.0467 -3.1431 2.1831 21 1 13.4401 -3.7511 0.8866 22 1 13.2817 -1.6776 2.1346 23 1 13.8581 -3.7387 3.2750 24 6 6.4356 -3.5325 -0.3186 25 6 5.7181 -2.1824 -0.2479 26 6 2.1967 -1.1963 -0.0005 27 6 1.4432 -2.5014 -0.0005 28 1 -0.3633 -0.0005 1.0276 29 1 -0.3633 0.8901 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6559 2.1325 -0.0004 32 1 4.1167 2.1402 0.0001 33 1 5.3564 0.0140 0.0111 34 1 3.0140 -3.2941 1.4164 35 1 4.4840 -2.5482 2.0884 36 1 4.6706 -5.0109 2.1344 37 1 4.3756 -5.0758 0.3799 38 1 6.5279 -5.9557 -1.1242 39 1 6.9593 -7.3853 -0.1550 40 1 5.3562 -6.6348 0.0308 41 1 8.9815 -6.2078 0.5928 42 1 8.5582 -4.6955 -0.2449 43 1 8.5008 -3.5066 1.9303 44 1 8.9241 -5.0190 2.7680 45 1 11.1911 -2.5210 4.2446 46 1 6.0317 -4.1159 -1.1460 47 1 7.5020 -3.3698 -0.4742 48 1 5.8454 -1.6530 -1.1922 49 1 6.1405 -1.5880 0.5623 50 1 1.1736 -2.7653 1.0221 51 1 0.5385 -2.3986 -0.5997 52 1 2.0725 -3.2842 -0.4240 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172500067.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:40 Heat of formation + Delta-G solvation = 30.100653 kcal Electronic energy + Delta-G solvation = -27360.660977 eV Core-core repulsion = 23938.598276 eV Total energy + Delta-G solvation = -3422.062701 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.61864 -38.84948 -36.45327 -33.65377 -33.37148 -32.07581 -31.07466 -30.12511 -29.11324 -27.51109 -26.60996 -25.54493 -24.83458 -23.55436 -21.80335 -21.13894 -20.73828 -19.94145 -18.62918 -17.03679 -16.15697 -16.10681 -15.65808 -15.37118 -14.89403 -14.58030 -14.45420 -14.34121 -14.17534 -13.87476 -13.61301 -13.23476 -12.99757 -12.93850 -12.72461 -12.63930 -12.35591 -12.05819 -11.91698 -11.76868 -11.65369 -11.57438 -11.37982 -11.22245 -11.12362 -10.94992 -10.89164 -10.67796 -10.44520 -10.41633 -10.05292 -9.61416 -9.42875 -9.21029 -8.89019 -8.60102 -8.26081 -7.84978 -7.76381 -5.90799 -3.92460 1.33311 1.35701 3.34398 3.42035 3.45748 3.58331 3.89439 4.22711 4.51988 4.71842 4.80883 4.92533 4.97354 5.08950 5.15968 5.23748 5.24698 5.36070 5.42250 5.44039 5.44886 5.46918 5.51800 5.54687 5.58040 5.64732 5.68421 5.69840 5.74268 5.80215 5.84377 5.91069 6.00313 6.09846 6.16208 6.18894 6.24413 6.29906 6.37044 6.40238 6.47061 6.57069 6.65538 6.79978 6.86833 7.03942 7.24654 7.35002 7.50511 7.56607 7.82991 8.03448 8.18394 8.54201 9.16714 9.70609 11.20019 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016081 B = 0.003143 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.807020 B = 8905.784697 C =10131.454631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.072 4.072 3 C -0.145 4.145 4 C -0.099 4.099 5 C -0.169 4.169 6 C 0.117 3.883 7 N -0.491 5.491 8 C 0.057 3.943 9 C 0.054 3.946 10 N -0.519 5.519 11 C 0.082 3.918 12 H 0.078 0.922 13 C -0.184 4.184 14 C -0.106 4.106 15 C 0.030 3.970 16 C -0.519 4.519 17 H 0.051 0.949 18 C 0.057 3.943 19 N -0.893 5.893 20 Si 0.886 3.114 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.285 1.285 24 C 0.053 3.947 25 C 0.054 3.946 26 C -0.100 4.100 27 C -0.112 4.112 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.128 0.872 34 H 0.085 0.915 35 H 0.051 0.949 36 H 0.078 0.922 37 H 0.041 0.959 38 H 0.053 0.947 39 H 0.057 0.943 40 H 0.048 0.952 41 H 0.049 0.951 42 H 0.050 0.950 43 H 0.030 0.970 44 H 0.010 0.990 45 H 0.257 0.743 46 H 0.037 0.963 47 H 0.096 0.904 48 H 0.079 0.921 49 H 0.058 0.942 50 H 0.064 0.936 51 H 0.064 0.936 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.005 3.084 -7.983 22.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.073 4.073 3 C -0.164 4.164 4 C -0.118 4.118 5 C -0.190 4.190 6 C 0.019 3.981 7 N -0.207 5.207 8 C -0.068 4.068 9 C -0.074 4.074 10 N -0.243 5.243 11 C -0.026 4.026 12 H 0.096 0.904 13 C -0.243 4.243 14 C -0.144 4.144 15 C -0.007 4.007 16 C -0.557 4.557 17 H 0.069 0.931 18 C -0.144 4.144 19 N -0.533 5.533 20 Si 0.714 3.286 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.212 1.212 24 C -0.075 4.075 25 C -0.073 4.073 26 C -0.102 4.102 27 C -0.168 4.168 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.135 0.865 32 H 0.137 0.863 33 H 0.146 0.854 34 H 0.103 0.897 35 H 0.069 0.931 36 H 0.097 0.903 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.048 0.952 44 H 0.028 0.972 45 H 0.067 0.933 46 H 0.056 0.944 47 H 0.115 0.885 48 H 0.098 0.902 49 H 0.076 0.924 50 H 0.083 0.917 51 H 0.082 0.918 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -20.919 3.094 -7.804 22.541 hybrid contribution 1.175 0.305 -0.183 1.227 sum -19.744 3.399 -7.987 21.568 Atomic orbital electron populations 1.20824 0.91446 1.02651 1.02191 1.19600 0.95688 0.92395 0.99617 1.20894 0.94192 0.97172 1.04093 1.20966 0.94136 0.97641 0.99009 1.21482 1.00578 0.92150 1.04740 1.18786 0.92333 0.88980 0.97982 1.59320 1.10586 1.17484 1.33290 1.22377 1.00755 0.94737 0.88952 1.22170 0.88836 0.95460 1.00977 1.62319 1.07645 1.20768 1.33570 1.21852 0.95467 0.87473 0.97771 0.90371 1.22494 1.00567 1.00805 1.00446 1.21795 0.91060 1.00262 1.01271 1.18999 0.94369 0.95546 0.91795 1.21366 0.95511 1.33718 1.05138 0.93068 1.24997 0.98034 0.96063 0.95306 1.69991 1.35803 1.37510 1.09976 0.86639 0.85974 0.77867 0.78108 1.19880 1.21137 1.21153 1.22246 1.01350 0.93106 0.90788 1.22369 0.85341 0.98090 1.01480 1.19364 0.91772 0.95147 1.03965 1.20828 0.99635 0.94822 1.01542 0.91286 0.91801 0.91259 0.86517 0.86250 0.85377 0.89733 0.93061 0.90328 0.94126 0.92766 0.92353 0.93251 0.93202 0.93191 0.95200 0.97198 0.93279 0.94441 0.88543 0.90227 0.92384 0.91748 0.91771 0.90490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 9.60 36.01 0.35 -0.54 16 2 C -0.07 -0.78 5.88 -104.65 -0.62 -1.39 16 3 C -0.14 -1.55 9.70 -39.54 -0.38 -1.93 16 4 C -0.10 -1.14 10.04 -39.61 -0.40 -1.53 16 5 C -0.17 -2.19 8.85 -39.38 -0.35 -2.54 16 6 C 0.12 1.54 5.40 -83.78 -0.45 1.08 16 7 N -0.49 -6.58 3.97 -170.95 -0.68 -7.26 16 8 C 0.06 0.75 5.04 -3.76 -0.02 0.73 16 9 C 0.05 0.74 5.13 -3.77 -0.02 0.72 16 10 N -0.52 -8.48 4.19 -226.49 -0.95 -9.43 16 11 C 0.08 1.38 2.43 -67.72 -0.16 1.22 16 12 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 13 C -0.18 -2.55 8.50 37.16 0.32 -2.24 16 14 C -0.11 -2.15 4.32 -26.73 -0.12 -2.26 16 15 C 0.03 0.77 4.86 -27.88 -0.14 0.64 16 16 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 17 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -27.20 13.29 55.43 0.74 -26.46 16 20 Si 0.89 21.91 29.54 -169.99 -5.02 16.88 16 21 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 24 C 0.05 0.82 4.84 -3.76 -0.02 0.81 16 25 C 0.05 0.78 4.32 -3.77 -0.02 0.76 16 26 C -0.10 -1.18 5.76 -104.42 -0.60 -1.78 16 27 C -0.11 -1.08 7.73 36.00 0.28 -0.80 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 30 H 0.07 0.49 6.04 -51.93 -0.31 0.17 16 31 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 33 H 0.13 1.66 5.89 -52.49 -0.31 1.35 16 34 H 0.08 0.95 5.20 -51.93 -0.27 0.68 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.04 0.53 6.48 -51.93 -0.34 0.19 16 38 H 0.05 0.75 6.56 -51.93 -0.34 0.41 16 39 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 40 H 0.05 0.62 6.48 -51.93 -0.34 0.28 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.05 0.99 6.00 -51.93 -0.31 0.68 16 43 H 0.03 0.83 7.75 -51.93 -0.40 0.42 16 44 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 46 H 0.04 0.56 6.57 -51.93 -0.34 0.21 16 47 H 0.10 1.67 5.95 -51.93 -0.31 1.36 16 48 H 0.08 1.06 7.71 -51.93 -0.40 0.66 16 49 H 0.06 0.93 7.09 -51.93 -0.37 0.56 16 50 H 0.06 0.57 7.45 -51.93 -0.39 0.18 16 51 H 0.06 0.53 6.19 -51.93 -0.32 0.21 16 52 H 0.08 0.82 6.81 -51.93 -0.35 0.46 16 LS Contribution 384.65 15.07 5.80 5.80 Total: -1.00 -30.77 384.65 -11.74 -42.51 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -8.87 Total: 0.55 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: -2.76 Total: -22.60 kcal Atomic # 7 Polarization: -42.26 SS G_CDS: -0.89 Total: -43.15 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.77 -11.74 -42.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172500067.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.614 kcal (2) G-P(sol) polarization free energy of solvation -30.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds