Wall clock time and date at job start Tue Mar 31 2020 12:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38307 * 119.96046 * 2 1 4 4 C 1.38272 * 120.14783 * 179.97438 * 3 2 1 5 5 C 1.38128 * 120.07531 * 359.75167 * 4 3 2 6 6 C 1.38895 * 119.92330 * 0.52138 * 5 4 3 7 7 N 1.39672 * 120.07368 * 179.74523 * 6 5 4 8 8 C 1.46961 * 110.99444 * 113.05785 * 7 6 5 9 9 C 1.53052 * 109.36345 * 176.81263 * 8 7 6 10 10 N 1.46956 * 109.36458 * 58.40067 * 9 8 7 11 11 C 1.46898 * 110.99840 * 176.81380 * 10 9 8 12 12 H 1.09005 * 109.47216 * 299.99645 * 11 10 9 13 13 C 1.52996 * 109.47287 * 60.00392 * 11 10 9 14 14 C 1.53001 * 109.46782 * 180.02562 * 11 10 9 15 15 C 1.53004 * 109.47489 * 64.99791 * 14 11 10 16 16 C 1.50700 * 109.47377 * 179.97438 * 15 14 11 17 17 H 1.08001 * 119.99663 * 0.02562 * 16 15 14 18 18 C 1.37872 * 120.00266 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99809 * 359.97438 * 18 16 15 20 20 Si 1.86792 * 120.00283 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47181 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47533 * 119.99766 * 20 18 16 23 23 H 1.48502 * 109.46938 * 239.99894 * 20 18 16 24 24 C 1.46961 * 110.88132 * 300.67880 * 10 9 8 25 25 C 1.46956 * 111.00203 * 349.26399 * 7 6 5 26 26 C 1.38082 * 119.96370 * 180.02562 * 2 1 3 27 27 C 1.50698 * 120.03871 * 359.97438 * 26 2 1 28 28 H 1.08998 * 109.47079 * 269.97403 * 1 2 3 29 29 H 1.08996 * 109.46778 * 29.97981 * 1 2 3 30 30 H 1.09000 * 109.46837 * 149.97606 * 1 2 3 31 31 H 1.07998 * 119.92877 * 359.97438 * 3 2 1 32 32 H 1.08002 * 119.96148 * 179.97438 * 4 3 2 33 33 H 1.07991 * 120.03778 * 180.27009 * 5 4 3 34 34 H 1.09004 * 109.48773 * 56.84647 * 8 7 6 35 35 H 1.08996 * 109.50964 * 296.79304 * 8 7 6 36 36 H 1.08993 * 109.48860 * 178.36940 * 9 8 7 37 37 H 1.09001 * 109.48536 * 298.43466 * 9 8 7 38 38 H 1.08994 * 109.47590 * 59.99940 * 13 11 10 39 39 H 1.09008 * 109.47089 * 180.02562 * 13 11 10 40 40 H 1.08999 * 109.46809 * 299.99601 * 13 11 10 41 41 H 1.09003 * 109.47252 * 184.99702 * 14 11 10 42 42 H 1.08994 * 109.47203 * 304.99540 * 14 11 10 43 43 H 1.08993 * 109.46818 * 300.00207 * 15 14 11 44 44 H 1.09002 * 109.46511 * 59.99809 * 15 14 11 45 45 H 0.97000 * 120.00341 * 179.97438 * 19 18 16 46 46 H 1.08996 * 109.49194 * 299.35745 * 24 10 9 47 47 H 1.08991 * 109.48935 * 179.28388 * 24 10 9 48 48 H 1.09004 * 109.48303 * 303.15101 * 25 7 6 49 49 H 1.08997 * 109.49225 * 63.21094 * 25 7 6 50 50 H 1.09002 * 109.47047 * 275.69733 * 27 26 2 51 51 H 1.09000 * 109.47040 * 35.69076 * 27 26 2 52 52 H 1.09004 * 109.47307 * 155.69439 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1982 0.0000 4 6 3.5804 1.2028 0.0005 5 6 4.2765 0.0097 0.0063 6 6 3.5860 -1.1954 0.0005 7 7 4.2868 -2.4036 0.0009 8 6 4.0806 -3.1315 1.2608 9 6 4.7980 -4.4816 1.1902 10 7 6.2293 -4.2604 0.9413 11 6 6.9663 -5.5311 0.9418 12 1 6.8511 -6.0176 1.9104 13 6 6.4127 -6.4421 -0.1557 14 6 8.4494 -5.2606 0.6807 15 6 9.0329 -4.4538 1.8424 16 6 10.4939 -4.1878 1.5855 17 1 10.9595 -4.5570 0.6837 18 6 11.2361 -3.4733 2.5018 19 7 10.6689 -3.0234 3.5998 20 14 13.0467 -3.1431 2.1831 21 1 13.4401 -3.7511 0.8866 22 1 13.2817 -1.6776 2.1346 23 1 13.8581 -3.7387 3.2750 24 6 6.4356 -3.5325 -0.3186 25 6 5.7181 -2.1824 -0.2479 26 6 2.1967 -1.1963 -0.0005 27 6 1.4432 -2.5014 -0.0005 28 1 -0.3633 -0.0005 1.0276 29 1 -0.3633 0.8901 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6559 2.1325 -0.0004 32 1 4.1167 2.1402 0.0001 33 1 5.3564 0.0140 0.0111 34 1 3.0140 -3.2941 1.4164 35 1 4.4840 -2.5482 2.0884 36 1 4.6706 -5.0109 2.1344 37 1 4.3756 -5.0758 0.3799 38 1 6.5279 -5.9557 -1.1242 39 1 6.9593 -7.3853 -0.1550 40 1 5.3562 -6.6348 0.0308 41 1 8.9815 -6.2078 0.5928 42 1 8.5582 -4.6955 -0.2449 43 1 8.5008 -3.5066 1.9303 44 1 8.9241 -5.0190 2.7680 45 1 11.1911 -2.5210 4.2446 46 1 6.0317 -4.1159 -1.1460 47 1 7.5020 -3.3698 -0.4742 48 1 5.8454 -1.6530 -1.1922 49 1 6.1405 -1.5880 0.5623 50 1 1.1736 -2.7653 1.0221 51 1 0.5385 -2.3986 -0.5997 52 1 2.0725 -3.2842 -0.4240 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172500067.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:39 Heat of formation + Delta-G solvation = 13.658732 kcal Electronic energy + Delta-G solvation = -27361.373952 eV Core-core repulsion = 23938.598276 eV Total energy + Delta-G solvation = -3422.775676 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.63222 -39.97274 -37.61372 -35.38709 -34.42984 -33.57225 -32.21946 -31.43150 -30.49014 -28.42770 -27.47307 -27.09614 -26.21628 -24.71544 -23.37666 -22.32818 -21.78583 -21.21169 -19.88461 -18.39186 -18.06514 -17.07505 -16.76627 -16.54140 -16.38021 -15.97837 -15.78751 -15.46511 -15.12091 -14.90928 -14.64424 -14.48060 -14.42488 -14.03291 -13.83925 -13.61707 -13.42034 -13.30857 -13.22157 -13.09481 -12.91569 -12.82069 -12.61919 -12.56528 -12.35065 -12.29302 -12.17379 -12.06829 -11.77634 -11.68547 -11.50566 -11.38051 -11.19450 -10.88709 -10.50568 -10.43239 -9.45600 -9.03873 -8.82248 -8.14937 -6.25389 0.42828 0.46469 1.38660 1.38759 1.51847 2.42199 2.62532 2.91111 2.99544 3.17607 3.80037 3.88774 3.95023 3.99830 4.12337 4.17036 4.21332 4.28008 4.29421 4.33554 4.37080 4.45316 4.47989 4.54370 4.59972 4.72438 4.75374 4.76693 4.82308 4.84285 4.87122 4.91033 4.93705 5.00109 5.00554 5.05136 5.07677 5.14823 5.21451 5.31779 5.36217 5.45139 5.46168 5.58747 5.58831 5.72342 5.86281 5.89899 6.00053 6.00316 6.24216 6.29072 6.33978 6.40758 6.94685 7.42959 8.96371 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016081 B = 0.003143 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.807020 B = 8905.784697 C =10131.454631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.077 4.077 3 C -0.146 4.146 4 C -0.109 4.109 5 C -0.191 4.191 6 C 0.093 3.907 7 N -0.483 5.483 8 C 0.062 3.938 9 C 0.058 3.942 10 N -0.545 5.545 11 C 0.088 3.912 12 H 0.069 0.931 13 C -0.172 4.172 14 C -0.095 4.095 15 C 0.042 3.958 16 C -0.539 4.539 17 H 0.055 0.945 18 C -0.001 4.001 19 N -0.932 5.932 20 Si 0.959 3.041 21 H -0.262 1.262 22 H -0.280 1.280 23 H -0.279 1.279 24 C 0.061 3.939 25 C 0.063 3.937 26 C -0.109 4.109 27 C -0.109 4.109 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.141 0.859 32 H 0.133 0.867 33 H 0.116 0.884 34 H 0.108 0.892 35 H 0.024 0.976 36 H 0.084 0.916 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.000 1.000 44 H -0.022 1.022 45 H 0.260 0.740 46 H 0.051 0.949 47 H 0.071 0.929 48 H 0.087 0.913 49 H 0.031 0.969 50 H 0.075 0.925 51 H 0.082 0.918 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.770 2.814 -9.335 24.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.077 4.077 3 C -0.165 4.165 4 C -0.127 4.127 5 C -0.211 4.211 6 C -0.004 4.004 7 N -0.200 5.200 8 C -0.063 4.063 9 C -0.070 4.070 10 N -0.270 5.270 11 C -0.020 4.020 12 H 0.087 0.913 13 C -0.230 4.230 14 C -0.132 4.132 15 C 0.005 3.995 16 C -0.577 4.577 17 H 0.074 0.926 18 C -0.198 4.198 19 N -0.573 5.573 20 Si 0.784 3.216 21 H -0.186 1.186 22 H -0.206 1.206 23 H -0.205 1.205 24 C -0.067 4.067 25 C -0.065 4.065 26 C -0.111 4.111 27 C -0.165 4.165 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.159 0.841 32 H 0.151 0.849 33 H 0.134 0.866 34 H 0.126 0.874 35 H 0.042 0.958 36 H 0.102 0.898 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.019 0.981 44 H -0.004 1.004 45 H 0.069 0.931 46 H 0.069 0.931 47 H 0.090 0.910 48 H 0.106 0.894 49 H 0.049 0.951 50 H 0.093 0.907 51 H 0.101 0.899 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -22.698 2.820 -9.171 24.642 hybrid contribution 1.670 0.472 0.279 1.758 sum -21.028 3.292 -8.892 23.066 Atomic orbital electron populations 1.20882 0.89033 1.03838 1.03125 1.20020 0.97479 0.91906 0.98322 1.21246 0.93881 0.98430 1.02934 1.21201 0.94965 0.97630 0.98917 1.21546 1.00253 0.93161 1.06156 1.18977 0.93252 0.88677 0.99473 1.59390 1.09443 1.17944 1.33185 1.22366 1.01812 0.94055 0.88100 1.22203 0.87077 0.95939 1.01758 1.62243 1.09518 1.20897 1.34302 1.21658 0.93327 0.88400 0.98614 0.91310 1.22346 1.01587 1.00169 0.98943 1.21602 0.93567 0.99246 0.98833 1.18793 0.93596 0.94501 0.92656 1.21808 0.96893 1.33733 1.05305 0.92644 1.25938 1.03186 0.95748 0.94975 1.70134 1.37845 1.38265 1.11029 0.85487 0.79749 0.77852 0.78478 1.18621 1.20579 1.20473 1.22106 0.99990 0.93664 0.90932 1.22212 0.86244 0.97157 1.00854 1.19676 0.91216 0.96697 1.03481 1.20842 0.99880 0.93326 1.02467 0.90320 0.90465 0.90294 0.84122 0.84900 0.86650 0.87427 0.95797 0.89771 0.92557 0.92570 0.91506 0.91360 0.92899 0.92897 0.98121 1.00354 0.93093 0.93123 0.91026 0.89444 0.95119 0.90690 0.89942 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 9.60 71.24 0.68 -0.70 16 2 C -0.08 -1.48 5.88 -19.88 -0.12 -1.60 16 3 C -0.15 -2.89 9.70 22.29 0.22 -2.67 16 4 C -0.11 -2.48 10.04 22.25 0.22 -2.25 16 5 C -0.19 -5.14 8.85 22.40 0.20 -4.95 16 6 C 0.09 2.46 5.40 38.22 0.21 2.67 16 7 N -0.48 -13.07 3.97 -694.76 -2.75 -15.82 16 8 C 0.06 1.63 5.04 86.31 0.43 2.06 16 9 C 0.06 1.55 5.13 86.31 0.44 1.99 16 10 N -0.54 -18.19 4.19 -870.49 -3.65 -21.84 16 11 C 0.09 2.96 2.43 44.91 0.11 3.07 16 12 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 13 C -0.17 -4.43 8.50 71.98 0.61 -3.82 16 14 C -0.09 -3.92 4.32 30.60 0.13 -3.79 16 15 C 0.04 2.25 4.86 29.85 0.15 2.40 16 16 C -0.54 -31.47 9.11 25.60 0.23 -31.24 16 17 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 18 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 19 N -0.93 -58.52 13.29 21.45 0.28 -58.24 16 20 Si 0.96 45.50 29.54 68.60 2.03 47.53 16 21 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 22 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 23 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 24 C 0.06 1.94 4.84 86.31 0.42 2.36 16 25 C 0.06 1.90 4.32 86.31 0.37 2.28 16 26 C -0.11 -2.40 5.76 -19.73 -0.11 -2.52 16 27 C -0.11 -1.85 7.73 71.24 0.55 -1.30 16 28 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.08 0.76 8.08 -2.39 -0.02 0.74 16 30 H 0.08 0.83 6.04 -2.39 -0.01 0.82 16 31 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 32 H 0.13 2.52 8.06 -2.91 -0.02 2.50 16 33 H 0.12 3.28 5.89 -2.91 -0.02 3.26 16 34 H 0.11 2.30 5.20 -2.38 -0.01 2.29 16 35 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.06 1.34 6.48 -2.39 -0.02 1.33 16 38 H 0.06 1.44 6.56 -2.39 -0.02 1.42 16 39 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 40 H 0.07 1.52 6.48 -2.39 -0.02 1.51 16 41 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.05 2.15 6.00 -2.39 -0.01 2.13 16 43 H 0.00 0.02 7.75 -2.39 -0.02 0.00 16 44 H -0.02 -1.31 8.14 -2.39 -0.02 -1.33 16 45 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 46 H 0.05 1.47 6.57 -2.39 -0.02 1.45 16 47 H 0.07 2.60 5.95 -2.39 -0.01 2.59 16 48 H 0.09 2.45 7.71 -2.38 -0.02 2.43 16 49 H 0.03 1.08 7.09 -2.39 -0.02 1.06 16 50 H 0.07 1.11 7.45 -2.39 -0.02 1.10 16 51 H 0.08 1.09 6.19 -2.39 -0.01 1.08 16 52 H 0.07 1.29 6.81 -2.39 -0.02 1.28 16 Total: -1.00 -68.43 384.65 2.01 -66.43 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.89 Total: 19.56 kcal Atomic # 6 Polarization: -42.82 SS G_CDS: 5.21 Total: -37.61 kcal Atomic # 7 Polarization: -89.78 SS G_CDS: -6.12 Total: -95.90 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -68.43 2.01 -66.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172500067.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.084 kcal (2) G-P(sol) polarization free energy of solvation -68.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds