Wall clock time and date at job start Tue Mar 31 2020 12:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38307 * 119.96258 * 2 1 4 4 C 1.38261 * 120.15369 * 179.97438 * 3 2 1 5 5 C 1.38134 * 120.07135 * 359.73890 * 4 3 2 6 6 C 1.38889 * 119.92427 * 0.53513 * 5 4 3 7 7 N 1.39670 * 120.07391 * 179.74036 * 6 5 4 8 8 C 1.46955 * 111.00014 * 349.23654 * 7 6 5 9 9 C 1.53055 * 109.36637 * 183.16558 * 8 7 6 10 10 N 1.46968 * 109.37740 * 301.63000 * 9 8 7 11 11 C 1.46901 * 110.99628 * 183.17670 * 10 9 8 12 12 H 1.08998 * 109.47146 * 55.00005 * 11 10 9 13 13 C 1.52998 * 109.47193 * 294.99982 * 11 10 9 14 14 C 1.52999 * 109.47175 * 174.99926 * 11 10 9 15 15 C 1.52999 * 109.46736 * 295.00095 * 14 11 10 16 16 C 1.50707 * 109.46852 * 179.97438 * 15 14 11 17 17 H 1.08000 * 119.99728 * 359.97438 * 16 15 14 18 18 C 1.37872 * 120.00153 * 179.97438 * 16 15 14 19 19 N 1.31522 * 119.99860 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00312 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46973 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47177 * 120.00320 * 20 18 16 23 23 H 1.48500 * 109.47295 * 240.00339 * 20 18 16 24 24 C 1.46950 * 110.87822 * 59.31003 * 10 9 8 25 25 C 1.46965 * 110.99644 * 113.05174 * 7 6 5 26 26 C 1.38085 * 119.96546 * 180.02562 * 2 1 3 27 27 C 1.50698 * 120.03757 * 359.97438 * 26 2 1 28 28 H 1.09001 * 109.47546 * 269.97624 * 1 2 3 29 29 H 1.09001 * 109.47487 * 29.98547 * 1 2 3 30 30 H 1.09002 * 109.47132 * 149.98066 * 1 2 3 31 31 H 1.08004 * 119.92434 * 359.97216 * 3 2 1 32 32 H 1.07999 * 119.96697 * 180.02562 * 4 3 2 33 33 H 1.08003 * 120.03705 * 180.27094 * 5 4 3 34 34 H 1.09000 * 109.47380 * 63.20473 * 8 7 6 35 35 H 1.09006 * 109.50742 * 303.13876 * 8 7 6 36 36 H 1.08994 * 109.49382 * 181.65160 * 9 8 7 37 37 H 1.08994 * 109.48706 * 61.60292 * 9 8 7 38 38 H 1.09006 * 109.47541 * 59.99926 * 13 11 10 39 39 H 1.08998 * 109.47444 * 180.02562 * 13 11 10 40 40 H 1.09008 * 109.47131 * 300.00093 * 13 11 10 41 41 H 1.09000 * 109.47011 * 54.99849 * 14 11 10 42 42 H 1.08992 * 109.47091 * 174.99779 * 14 11 10 43 43 H 1.09000 * 109.47169 * 299.99657 * 15 14 11 44 44 H 1.09004 * 109.47155 * 60.00134 * 15 14 11 45 45 H 0.97004 * 119.99717 * 179.97438 * 19 18 16 46 46 H 1.08999 * 109.49256 * 60.64676 * 24 10 9 47 47 H 1.09002 * 109.48578 * 180.68959 * 24 10 9 48 48 H 1.09004 * 109.48527 * 56.84491 * 25 7 6 49 49 H 1.08994 * 109.50835 * 296.78830 * 25 7 6 50 50 H 1.08997 * 109.46679 * 275.69630 * 27 26 2 51 51 H 1.09003 * 109.47340 * 35.69136 * 27 26 2 52 52 H 1.09002 * 109.47326 * 155.69456 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1977 1.1982 0.0000 4 6 3.5803 1.2028 0.0005 5 6 4.2764 0.0098 0.0065 6 6 3.5860 -1.1953 0.0008 7 7 4.2867 -2.4035 0.0013 8 6 5.7180 -2.1823 -0.2479 9 6 6.4356 -3.5324 -0.3180 10 7 6.2292 -4.2602 0.9421 11 6 6.9663 -5.5309 0.9427 12 1 8.0192 -5.3403 0.7352 13 6 6.3931 -6.4535 -0.1348 14 6 6.8292 -6.1993 2.3121 15 6 7.5131 -5.3341 3.3726 16 6 7.3776 -5.9922 4.7216 17 1 6.8555 -6.9332 4.8133 18 6 7.9201 -5.3931 5.8385 19 7 8.5555 -4.2469 5.7268 20 14 7.7527 -6.2091 7.5105 21 1 7.0003 -7.4813 7.3673 22 1 9.1027 -6.4921 8.0605 23 1 7.0225 -5.3028 8.4328 24 6 4.7979 -4.4814 1.1907 25 6 4.0805 -3.1313 1.2613 26 6 2.1966 -1.1963 -0.0005 27 6 1.4432 -2.5014 -0.0005 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3634 0.8901 -0.5136 30 1 -0.3633 -0.8898 -0.5141 31 1 1.6558 2.1325 -0.0005 32 1 4.1166 2.1402 0.0010 33 1 5.3564 0.0140 0.0114 34 1 6.1402 -1.5876 0.5621 35 1 5.8455 -1.6534 -1.1925 36 1 7.5020 -3.3698 -0.4735 37 1 6.0322 -4.1161 -1.1453 38 1 6.4907 -5.9774 -1.1105 39 1 6.9396 -7.3966 -0.1341 40 1 5.3400 -6.6442 0.0727 41 1 5.7732 -6.3093 2.5586 42 1 7.3003 -7.1818 2.2856 43 1 8.5692 -5.2242 3.1260 44 1 7.0419 -4.3516 3.3990 45 1 8.9368 -3.8252 6.5127 46 1 4.3756 -5.0758 0.3805 47 1 4.6705 -5.0110 2.1349 48 1 3.0139 -3.2939 1.4169 49 1 4.4839 -2.5480 2.0889 50 1 1.1737 -2.7652 1.0221 51 1 0.5385 -2.3987 -0.5997 52 1 2.0725 -3.2842 -0.4239 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172500068.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:42 Heat of formation + Delta-G solvation = 12.934473 kcal Electronic energy + Delta-G solvation = -27382.106163 eV Core-core repulsion = 23959.299081 eV Total energy + Delta-G solvation = -3422.807083 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.62338 -39.95333 -37.60817 -35.38119 -34.41813 -33.62110 -31.97256 -31.69793 -30.43621 -28.40192 -27.45816 -27.08365 -26.30385 -24.63744 -23.35699 -22.41487 -21.92384 -20.94659 -19.97806 -18.38724 -18.01342 -17.06960 -16.93078 -16.52492 -16.23451 -15.92930 -15.86315 -15.43376 -15.11562 -14.85807 -14.72202 -14.52577 -14.32120 -14.08249 -13.82721 -13.63707 -13.43626 -13.27674 -13.19292 -13.07993 -12.95522 -12.82457 -12.61409 -12.57223 -12.35052 -12.33695 -12.23247 -12.01638 -11.73349 -11.66946 -11.53432 -11.35897 -11.19132 -10.90564 -10.50139 -10.42035 -9.45264 -9.03519 -8.81800 -8.14429 -6.24865 0.43235 0.46974 1.39187 1.39285 1.52437 2.42759 2.62251 2.93152 2.99340 3.18171 3.79400 3.90410 3.94481 4.00129 4.12095 4.17243 4.24447 4.25638 4.30199 4.32935 4.37135 4.45012 4.48439 4.54240 4.60054 4.71958 4.73870 4.78721 4.81561 4.83727 4.87318 4.90056 4.94619 4.98151 5.02336 5.03498 5.06914 5.14063 5.20644 5.31986 5.35900 5.45701 5.46184 5.58497 5.59167 5.72699 5.86447 5.89470 6.00345 6.02141 6.25560 6.28778 6.34423 6.41387 6.95324 7.43501 8.96912 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013768 B = 0.003206 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.183151 B = 8732.456529 C = 9520.214321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.078 4.078 3 C -0.147 4.147 4 C -0.108 4.108 5 C -0.187 4.187 6 C 0.092 3.908 7 N -0.484 5.484 8 C 0.060 3.940 9 C 0.060 3.940 10 N -0.545 5.545 11 C 0.088 3.912 12 H 0.067 0.933 13 C -0.172 4.172 14 C -0.092 4.092 15 C 0.042 3.958 16 C -0.539 4.539 17 H 0.056 0.944 18 C -0.002 4.002 19 N -0.933 5.933 20 Si 0.960 3.040 21 H -0.261 1.261 22 H -0.279 1.279 23 H -0.280 1.280 24 C 0.061 3.939 25 C 0.065 3.935 26 C -0.111 4.111 27 C -0.109 4.109 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.141 0.859 32 H 0.137 0.863 33 H 0.123 0.877 34 H 0.035 0.965 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.052 0.948 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.052 0.948 42 H 0.052 0.948 43 H -0.022 1.022 44 H 0.000 1.000 45 H 0.260 0.740 46 H 0.055 0.945 47 H 0.072 0.928 48 H 0.100 0.900 49 H 0.019 0.981 50 H 0.069 0.931 51 H 0.082 0.918 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.265 7.183 -16.695 23.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.079 4.079 3 C -0.166 4.166 4 C -0.126 4.126 5 C -0.208 4.208 6 C -0.005 4.005 7 N -0.200 5.200 8 C -0.068 4.068 9 C -0.068 4.068 10 N -0.270 5.270 11 C -0.020 4.020 12 H 0.086 0.914 13 C -0.230 4.230 14 C -0.130 4.130 15 C 0.004 3.996 16 C -0.577 4.577 17 H 0.074 0.926 18 C -0.199 4.199 19 N -0.573 5.573 20 Si 0.785 3.215 21 H -0.185 1.185 22 H -0.205 1.205 23 H -0.206 1.206 24 C -0.067 4.067 25 C -0.061 4.061 26 C -0.113 4.113 27 C -0.166 4.166 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.159 0.841 32 H 0.155 0.845 33 H 0.141 0.859 34 H 0.053 0.947 35 H 0.114 0.886 36 H 0.100 0.900 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.071 0.929 43 H -0.004 1.004 44 H 0.018 0.982 45 H 0.069 0.931 46 H 0.073 0.927 47 H 0.090 0.910 48 H 0.118 0.882 49 H 0.038 0.962 50 H 0.088 0.912 51 H 0.101 0.899 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.138 7.220 -16.587 23.588 hybrid contribution 0.735 -0.070 1.151 1.367 sum -14.403 7.150 -15.436 22.290 Atomic orbital electron populations 1.20881 0.89251 1.03830 1.02999 1.20010 0.97406 0.92004 0.98453 1.21252 0.94120 0.98260 1.02927 1.21223 0.94813 0.97797 0.98787 1.21561 1.00486 0.92797 1.05918 1.18981 0.93168 0.88858 0.99490 1.59372 1.10005 1.17914 1.32737 1.22289 0.85995 0.97209 1.01260 1.22164 1.00310 0.93715 0.90649 1.62230 1.09577 1.21110 1.34069 1.21655 0.97375 0.87981 0.94992 0.91436 1.22345 1.01655 1.00322 0.98713 1.21556 0.99919 0.97897 0.93603 1.18792 0.93379 0.94974 0.92409 1.21819 1.34662 1.06891 0.94375 0.92593 1.25947 0.95070 0.95540 1.03326 1.70139 1.38165 1.18457 1.30570 0.85482 0.77942 0.78811 0.79305 1.18534 1.20507 1.20585 1.22127 0.87539 0.95786 1.01288 1.22291 1.01481 0.94078 0.88202 1.19682 0.91529 0.96528 1.03581 1.20830 0.99959 0.93584 1.02196 0.90580 0.90313 0.90412 0.84146 0.84526 0.85883 0.94702 0.88591 0.90024 0.92957 0.91709 0.91501 0.92239 0.92950 0.92907 1.00409 0.98163 0.93113 0.92692 0.90966 0.88151 0.96213 0.91241 0.89912 0.91415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 9.60 71.23 0.68 -0.85 16 2 C -0.08 -1.57 5.88 -19.89 -0.12 -1.69 16 3 C -0.15 -2.88 9.70 22.29 0.22 -2.66 16 4 C -0.11 -2.32 10.04 22.25 0.22 -2.10 16 5 C -0.19 -4.73 8.85 22.40 0.20 -4.53 16 6 C 0.09 2.41 5.40 38.21 0.21 2.62 16 7 N -0.48 -13.00 3.96 -694.76 -2.75 -15.75 16 8 C 0.06 1.59 4.32 86.31 0.37 1.97 16 9 C 0.06 1.63 5.25 86.31 0.45 2.08 16 10 N -0.55 -18.18 4.15 -870.47 -3.61 -21.79 16 11 C 0.09 2.96 2.35 44.91 0.11 3.07 16 12 H 0.07 2.39 8.11 -2.39 -0.02 2.37 16 13 C -0.17 -4.43 8.49 71.98 0.61 -3.82 16 14 C -0.09 -3.80 4.45 30.59 0.14 -3.66 16 15 C 0.04 2.25 4.86 29.85 0.15 2.40 16 16 C -0.54 -31.48 9.11 25.60 0.23 -31.25 16 17 H 0.06 3.14 7.74 -2.91 -0.02 3.11 16 18 C 0.00 -0.10 5.46 84.65 0.46 0.37 16 19 N -0.93 -58.61 13.29 21.45 0.28 -58.33 16 20 Si 0.96 45.44 29.54 68.60 2.03 47.47 16 21 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 22 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 23 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 24 C 0.06 1.86 4.82 86.31 0.42 2.28 16 25 C 0.07 1.91 5.04 86.31 0.43 2.35 16 26 C -0.11 -2.57 5.76 -19.73 -0.11 -2.69 16 27 C -0.11 -2.09 7.73 71.24 0.55 -1.54 16 28 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.08 0.84 8.08 -2.39 -0.02 0.82 16 30 H 0.08 0.93 6.04 -2.39 -0.01 0.91 16 31 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 32 H 0.14 2.33 8.06 -2.91 -0.02 2.30 16 33 H 0.12 3.05 5.89 -2.91 -0.02 3.03 16 34 H 0.03 1.07 7.09 -2.39 -0.02 1.05 16 35 H 0.10 2.20 7.71 -2.38 -0.02 2.18 16 36 H 0.08 2.16 8.12 -2.39 -0.02 2.14 16 37 H 0.05 1.31 6.60 -2.39 -0.02 1.29 16 38 H 0.06 1.48 6.59 -2.38 -0.02 1.47 16 39 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.06 1.49 6.46 -2.38 -0.02 1.48 16 41 H 0.05 2.11 6.11 -2.39 -0.01 2.10 16 42 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 43 H -0.02 -1.34 8.14 -2.39 -0.02 -1.36 16 44 H 0.00 0.00 7.75 -2.39 -0.02 -0.02 16 45 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 46 H 0.06 1.50 6.46 -2.39 -0.02 1.49 16 47 H 0.07 2.50 6.07 -2.39 -0.01 2.48 16 48 H 0.10 2.60 5.20 -2.38 -0.01 2.58 16 49 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 50 H 0.07 1.27 7.44 -2.39 -0.02 1.25 16 51 H 0.08 1.24 6.19 -2.39 -0.01 1.23 16 52 H 0.07 1.42 6.81 -2.39 -0.02 1.41 16 Total: -1.00 -68.36 384.97 2.05 -66.31 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 0.89 Total: 19.75 kcal Atomic # 6 Polarization: -42.88 SS G_CDS: 5.22 Total: -37.66 kcal Atomic # 7 Polarization: -89.78 SS G_CDS: -6.08 Total: -95.87 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -68.36 2.05 -66.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172500068.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.248 kcal (2) G-P(sol) polarization free energy of solvation -68.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds