Wall clock time and date at job start Tue Mar 31 2020 11:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47542 * 2 1 4 4 C 1.53005 * 109.46836 * 120.00059 * 2 1 3 5 5 C 1.53006 * 109.46833 * 183.04369 * 4 2 1 6 6 C 1.50703 * 109.46937 * 179.97438 * 5 4 2 7 7 H 1.08007 * 119.99796 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99612 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00172 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 119.99446 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47142 * 60.00167 * 10 8 6 12 12 H 1.48503 * 109.46778 * 179.97438 * 10 8 6 13 13 H 1.48491 * 109.47225 * 300.00208 * 10 8 6 14 14 N 1.46897 * 109.46838 * 239.99463 * 2 1 3 15 15 C 1.46845 * 110.99652 * 306.77201 * 14 2 1 16 16 C 1.53041 * 109.51456 * 185.84867 * 15 14 2 17 17 C 1.53119 * 109.27926 * 300.81484 * 16 15 14 18 18 H 1.08997 * 109.57579 * 297.72158 * 17 16 15 19 19 N 1.46894 * 109.52300 * 177.56241 * 17 16 15 20 20 C 1.48525 * 111.00264 * 54.08616 * 19 17 16 21 21 C 1.54941 * 103.22856 * 159.72035 * 20 19 17 22 22 C 1.54592 * 102.92345 * 322.58682 * 21 20 19 23 23 C 1.47903 * 110.99862 * 171.48563 * 19 17 16 24 24 C 1.53123 * 109.16053 * 57.65642 * 17 16 15 25 25 F 1.39891 * 109.50249 * 182.40556 * 24 17 16 26 26 F 1.39894 * 109.53743 * 62.30474 * 24 17 16 27 27 C 1.46854 * 110.99982 * 70.97739 * 14 2 1 28 28 H 1.09005 * 109.46894 * 59.99648 * 1 2 3 29 29 H 1.08995 * 109.47542 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46756 * 300.00330 * 1 2 3 31 31 H 1.08998 * 109.47044 * 303.04017 * 4 2 1 32 32 H 1.09003 * 109.46902 * 63.04384 * 4 2 1 33 33 H 1.08998 * 109.47018 * 299.99664 * 5 4 2 34 34 H 1.08995 * 109.46779 * 59.99723 * 5 4 2 35 35 H 0.96999 * 119.99741 * 179.97438 * 9 8 6 36 36 H 1.09002 * 109.47139 * 65.83345 * 15 14 2 37 37 H 1.08999 * 109.45600 * 305.85605 * 15 14 2 38 38 H 1.09000 * 109.50208 * 180.87813 * 16 15 14 39 39 H 1.09001 * 109.53679 * 60.77717 * 16 15 14 40 40 H 1.09003 * 110.66693 * 278.15630 * 20 19 17 41 41 H 1.09004 * 110.66909 * 41.28746 * 20 19 17 42 42 H 1.08997 * 110.72409 * 204.22704 * 21 20 19 43 43 H 1.09009 * 110.87262 * 81.01716 * 21 20 19 44 44 H 1.09001 * 110.31240 * 263.04184 * 22 21 20 45 45 H 1.08998 * 110.39356 * 140.91266 * 22 21 20 46 46 H 1.08993 * 109.91883 * 333.50617 * 23 19 17 47 47 H 1.08999 * 109.92167 * 94.80285 * 23 19 17 48 48 H 1.09005 * 109.46007 * 54.13792 * 27 14 2 49 49 H 1.09001 * 109.45822 * 294.16597 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5681 -0.6553 1.2882 6 6 4.0704 -1.3652 2.5190 7 1 3.3697 -1.8185 3.2047 8 6 5.4244 -1.4369 2.7691 9 7 6.2775 -0.8854 1.9339 10 14 6.0469 -2.3175 4.2944 11 1 5.6131 -3.7372 4.2581 12 1 7.5302 -2.2544 4.3316 13 1 5.4925 -1.6614 5.5057 14 7 2.0196 -0.6926 -1.1994 15 6 1.4212 -2.0285 -1.3167 16 6 2.0606 -2.7738 -2.4905 17 6 1.8339 -1.9777 -3.7786 18 1 0.7650 -1.9023 -3.9780 19 7 2.4955 -2.6587 -4.8994 20 6 2.0556 -4.0739 -4.9970 21 6 2.4039 -4.4536 -6.4582 22 6 2.0792 -3.1592 -7.2386 23 6 2.1310 -2.0332 -6.1892 24 6 2.4236 -0.5743 -3.6125 25 9 2.1722 0.1774 -4.7652 26 9 3.8044 -0.6683 -3.4080 27 6 1.7737 0.1072 -2.4062 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6328 -0.2399 2.1384 32 1 1.7218 -1.7635 1.2224 33 1 3.9753 -1.1367 0.3991 34 1 3.8861 0.3869 1.3150 35 1 7.2300 -0.9355 2.1101 36 1 0.3490 -1.9325 -1.4881 37 1 1.5933 -2.5855 -0.3957 38 1 1.6053 -3.7594 -2.5870 39 1 3.1306 -2.8829 -2.3136 40 1 2.6086 -4.6979 -4.2950 41 1 0.9825 -4.1560 -4.8236 42 1 1.7794 -5.2782 -6.8018 43 1 3.4601 -4.7063 -6.5525 44 1 1.0834 -3.2218 -7.6775 45 1 2.8242 -2.9870 -8.0153 46 1 1.1544 -1.5564 -6.1078 47 1 2.8841 -1.2974 -6.4711 48 1 2.2017 1.1013 -2.2765 49 1 0.6999 0.1930 -2.5724 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172506620.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:30 Heat of formation + Delta-G solvation = -97.241369 kcal Electronic energy + Delta-G solvation = -28889.177446 eV Core-core repulsion = 24907.363251 eV Total energy + Delta-G solvation = -3981.814195 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.202 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.69110 -46.60874 -39.63305 -38.51557 -34.87396 -33.09868 -31.69140 -30.47147 -29.40442 -28.99447 -28.15500 -25.24253 -24.00127 -23.38413 -21.63597 -21.06378 -20.85274 -20.18978 -19.08401 -17.17447 -16.83877 -16.48313 -16.12144 -15.94096 -15.77521 -15.29664 -14.65162 -14.37999 -14.13490 -14.05827 -13.63611 -13.36544 -13.17947 -13.04612 -12.95778 -12.84225 -12.65878 -12.36826 -12.30211 -12.11032 -11.83797 -11.70260 -11.48350 -11.41477 -11.27486 -11.18799 -11.13239 -10.82850 -10.80747 -10.64403 -10.44875 -10.23339 -10.11608 -9.61022 -9.20583 -8.88979 -8.62736 -8.22038 -7.95132 -5.85045 -3.87310 3.39837 3.44748 3.46437 3.50377 3.74319 3.97018 4.20711 4.37911 4.44410 4.55787 4.65189 4.70492 4.82664 5.01001 5.06745 5.19325 5.19844 5.26724 5.31338 5.43388 5.44997 5.49842 5.51519 5.54968 5.58599 5.62179 5.63595 5.65256 5.76384 5.80570 5.89236 5.94786 5.98896 6.14267 6.17814 6.26420 6.37402 6.59845 6.65961 6.78105 6.80653 7.20880 7.31841 7.39001 7.86572 8.08375 8.25653 8.58295 9.21602 9.75312 11.25574 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.015803 B = 0.003678 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.429361 B = 7610.121816 C = 8302.364157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.084 3.916 3 H 0.081 0.919 4 C -0.101 4.101 5 C 0.029 3.971 6 C -0.522 4.522 7 H 0.049 0.951 8 C 0.058 3.942 9 N -0.891 5.891 10 Si 0.886 3.114 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.279 1.279 14 N -0.508 5.508 15 C 0.049 3.951 16 C -0.112 4.112 17 C 0.042 3.958 18 H 0.062 0.938 19 N -0.507 5.507 20 C 0.036 3.964 21 C -0.123 4.123 22 C -0.131 4.131 23 C 0.034 3.966 24 C 0.306 3.694 25 F -0.206 7.206 26 F -0.171 7.171 27 C 0.018 3.982 28 H 0.045 0.955 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.034 0.966 34 H 0.009 0.991 35 H 0.259 0.741 36 H 0.033 0.967 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.045 0.955 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.064 0.936 45 H 0.072 0.928 46 H 0.046 0.954 47 H 0.083 0.917 48 H 0.098 0.902 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.914 -3.321 -16.705 21.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.024 4.024 3 H 0.099 0.901 4 C -0.138 4.138 5 C -0.008 4.008 6 C -0.561 4.561 7 H 0.068 0.932 8 C -0.143 4.143 9 N -0.530 5.530 10 Si 0.714 3.286 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.205 1.205 14 N -0.231 5.231 15 C -0.079 4.079 16 C -0.150 4.150 17 C -0.068 4.068 18 H 0.080 0.920 19 N -0.230 5.230 20 C -0.091 4.091 21 C -0.161 4.161 22 C -0.169 4.169 23 C -0.094 4.094 24 C 0.269 3.731 25 F -0.187 7.187 26 F -0.152 7.152 27 C -0.112 4.112 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.027 0.973 35 H 0.069 0.931 36 H 0.051 0.949 37 H 0.116 0.884 38 H 0.095 0.905 39 H 0.115 0.885 40 H 0.106 0.894 41 H 0.063 0.937 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.083 0.917 45 H 0.091 0.909 46 H 0.064 0.936 47 H 0.102 0.898 48 H 0.117 0.883 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.616 -3.290 -16.614 21.119 hybrid contribution -1.253 -0.198 0.497 1.362 sum -13.869 -3.487 -16.117 21.546 Atomic orbital electron populations 1.22528 0.98579 1.01844 1.01533 1.21915 0.91191 0.98736 0.90552 0.90098 1.21728 1.01097 0.98178 0.92846 1.19001 0.87722 0.96872 0.97174 1.21272 0.91583 1.35199 1.08019 0.93239 1.24987 0.97156 0.95783 0.96335 1.69971 1.02015 1.44750 1.36252 0.86772 0.77647 0.80277 0.83911 1.20414 1.21391 1.20470 1.61960 1.58659 1.01899 1.00626 1.22247 0.95358 0.90567 0.99703 1.21723 1.04716 0.97664 0.90917 1.22812 0.96494 0.93102 0.94352 0.92036 1.64780 1.54324 1.02297 1.01647 1.23255 0.98527 0.89617 0.97703 1.22475 1.02354 0.97053 0.94246 1.22423 1.01680 0.94744 0.98101 1.23017 1.00214 0.97173 0.88987 1.20874 0.79331 0.90239 0.82673 1.92954 1.94224 1.78800 1.52753 1.93076 1.30665 1.96629 1.94821 1.22941 0.99168 0.98906 0.90140 0.93578 0.92402 0.91905 0.93055 0.93291 0.94748 0.97263 0.93135 0.94884 0.88422 0.90496 0.88479 0.89355 0.93713 0.91084 0.90487 0.91694 0.90936 0.93602 0.89819 0.88330 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.36 8.43 37.16 0.31 -2.05 16 2 C 0.08 1.35 2.33 -67.71 -0.16 1.19 16 3 H 0.08 1.36 7.97 -51.93 -0.41 0.94 16 4 C -0.10 -1.99 4.54 -26.73 -0.12 -2.12 16 5 C 0.03 0.76 4.84 -27.88 -0.14 0.62 16 6 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 7 H 0.05 1.37 7.74 -52.48 -0.41 0.96 16 8 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 9 N -0.89 -27.46 13.29 55.43 0.74 -26.73 16 10 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 N -0.51 -8.14 3.90 -226.68 -0.88 -9.03 16 15 C 0.05 0.69 4.52 -3.83 -0.02 0.67 16 16 C -0.11 -1.48 4.88 -26.65 -0.13 -1.61 16 17 C 0.04 0.54 1.49 -67.59 -0.10 0.44 16 18 H 0.06 0.71 7.85 -51.93 -0.41 0.30 16 19 N -0.51 -6.32 5.00 -222.35 -1.11 -7.43 16 20 C 0.04 0.36 5.17 -1.90 -0.01 0.35 16 21 C -0.12 -1.05 7.06 -24.87 -0.18 -1.22 16 22 C -0.13 -1.14 6.93 -25.37 -0.18 -1.31 16 23 C 0.03 0.38 5.11 -2.75 -0.01 0.36 16 24 C 0.31 4.55 1.75 -26.65 -0.05 4.50 16 25 F -0.21 -2.98 14.55 2.25 0.03 -2.95 16 26 F -0.17 -3.21 16.49 2.25 0.04 -3.18 16 27 C 0.02 0.26 4.64 -3.83 -0.02 0.24 16 28 H 0.05 0.52 6.85 -51.93 -0.36 0.17 16 29 H 0.06 0.70 6.45 -51.93 -0.34 0.37 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.05 0.94 6.33 -51.93 -0.33 0.62 16 33 H 0.03 0.96 7.69 -51.93 -0.40 0.57 16 34 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.03 0.40 6.57 -51.93 -0.34 0.06 16 37 H 0.10 1.49 6.20 -51.93 -0.32 1.17 16 38 H 0.08 0.84 6.98 -51.93 -0.36 0.48 16 39 H 0.10 1.58 7.91 -51.93 -0.41 1.17 16 40 H 0.09 0.89 7.71 -51.93 -0.40 0.49 16 41 H 0.04 0.41 8.02 -51.93 -0.42 -0.01 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.08 0.69 8.14 -51.92 -0.42 0.26 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.05 0.50 7.23 -51.93 -0.38 0.12 16 47 H 0.08 1.03 7.62 -51.93 -0.40 0.64 16 48 H 0.10 1.42 8.00 -51.93 -0.42 1.00 16 49 H 0.06 0.67 6.91 -51.93 -0.36 0.31 16 LS Contribution 369.70 15.07 5.57 5.57 Total: -1.00 -31.51 369.70 -10.38 -41.89 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -8.54 Total: -1.61 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -1.20 Total: -13.54 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: -1.26 Total: -43.18 kcal Atomic # 9 Polarization: -6.19 SS G_CDS: 0.07 Total: -6.12 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.51 -10.38 -41.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172506620.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.354 kcal (2) G-P(sol) polarization free energy of solvation -31.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds