Wall clock time and date at job start Tue Mar 31 2020 11:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47542 * 2 1 4 4 C 1.53005 * 109.46836 * 120.00059 * 2 1 3 5 5 C 1.53006 * 109.46833 * 183.04369 * 4 2 1 6 6 C 1.50703 * 109.46937 * 179.97438 * 5 4 2 7 7 H 1.08007 * 119.99796 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99612 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00172 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 119.99446 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47142 * 60.00167 * 10 8 6 12 12 H 1.48503 * 109.46778 * 179.97438 * 10 8 6 13 13 H 1.48491 * 109.47225 * 300.00208 * 10 8 6 14 14 N 1.46897 * 109.46838 * 239.99463 * 2 1 3 15 15 C 1.46845 * 110.99652 * 306.77201 * 14 2 1 16 16 C 1.53041 * 109.51456 * 185.84867 * 15 14 2 17 17 C 1.53119 * 109.27926 * 300.81484 * 16 15 14 18 18 H 1.08997 * 109.57579 * 297.72158 * 17 16 15 19 19 N 1.46894 * 109.52300 * 177.56241 * 17 16 15 20 20 C 1.48525 * 111.00264 * 54.08616 * 19 17 16 21 21 C 1.54941 * 103.22856 * 159.72035 * 20 19 17 22 22 C 1.54592 * 102.92345 * 322.58682 * 21 20 19 23 23 C 1.47903 * 110.99862 * 171.48563 * 19 17 16 24 24 C 1.53123 * 109.16053 * 57.65642 * 17 16 15 25 25 F 1.39891 * 109.50249 * 182.40556 * 24 17 16 26 26 F 1.39894 * 109.53743 * 62.30474 * 24 17 16 27 27 C 1.46854 * 110.99982 * 70.97739 * 14 2 1 28 28 H 1.09005 * 109.46894 * 59.99648 * 1 2 3 29 29 H 1.08995 * 109.47542 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46756 * 300.00330 * 1 2 3 31 31 H 1.08998 * 109.47044 * 303.04017 * 4 2 1 32 32 H 1.09003 * 109.46902 * 63.04384 * 4 2 1 33 33 H 1.08998 * 109.47018 * 299.99664 * 5 4 2 34 34 H 1.08995 * 109.46779 * 59.99723 * 5 4 2 35 35 H 0.96999 * 119.99741 * 179.97438 * 9 8 6 36 36 H 1.09002 * 109.47139 * 65.83345 * 15 14 2 37 37 H 1.08999 * 109.45600 * 305.85605 * 15 14 2 38 38 H 1.09000 * 109.50208 * 180.87813 * 16 15 14 39 39 H 1.09001 * 109.53679 * 60.77717 * 16 15 14 40 40 H 1.09003 * 110.66693 * 278.15630 * 20 19 17 41 41 H 1.09004 * 110.66909 * 41.28746 * 20 19 17 42 42 H 1.08997 * 110.72409 * 204.22704 * 21 20 19 43 43 H 1.09009 * 110.87262 * 81.01716 * 21 20 19 44 44 H 1.09001 * 110.31240 * 263.04184 * 22 21 20 45 45 H 1.08998 * 110.39356 * 140.91266 * 22 21 20 46 46 H 1.08993 * 109.91883 * 333.50617 * 23 19 17 47 47 H 1.08999 * 109.92167 * 94.80285 * 23 19 17 48 48 H 1.09005 * 109.46007 * 54.13792 * 27 14 2 49 49 H 1.09001 * 109.45822 * 294.16597 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5681 -0.6553 1.2882 6 6 4.0704 -1.3652 2.5190 7 1 3.3697 -1.8185 3.2047 8 6 5.4244 -1.4369 2.7691 9 7 6.2775 -0.8854 1.9339 10 14 6.0469 -2.3175 4.2944 11 1 5.6131 -3.7372 4.2581 12 1 7.5302 -2.2544 4.3316 13 1 5.4925 -1.6614 5.5057 14 7 2.0196 -0.6926 -1.1994 15 6 1.4212 -2.0285 -1.3167 16 6 2.0606 -2.7738 -2.4905 17 6 1.8339 -1.9777 -3.7786 18 1 0.7650 -1.9023 -3.9780 19 7 2.4955 -2.6587 -4.8994 20 6 2.0556 -4.0739 -4.9970 21 6 2.4039 -4.4536 -6.4582 22 6 2.0792 -3.1592 -7.2386 23 6 2.1310 -2.0332 -6.1892 24 6 2.4236 -0.5743 -3.6125 25 9 2.1722 0.1774 -4.7652 26 9 3.8044 -0.6683 -3.4080 27 6 1.7737 0.1072 -2.4062 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6328 -0.2399 2.1384 32 1 1.7218 -1.7635 1.2224 33 1 3.9753 -1.1367 0.3991 34 1 3.8861 0.3869 1.3150 35 1 7.2300 -0.9355 2.1101 36 1 0.3490 -1.9325 -1.4881 37 1 1.5933 -2.5855 -0.3957 38 1 1.6053 -3.7594 -2.5870 39 1 3.1306 -2.8829 -2.3136 40 1 2.6086 -4.6979 -4.2950 41 1 0.9825 -4.1560 -4.8236 42 1 1.7794 -5.2782 -6.8018 43 1 3.4601 -4.7063 -6.5525 44 1 1.0834 -3.2218 -7.6775 45 1 2.8242 -2.9870 -8.0153 46 1 1.1544 -1.5564 -6.1078 47 1 2.8841 -1.2974 -6.4711 48 1 2.2017 1.1013 -2.2765 49 1 0.6999 0.1930 -2.5724 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172506620.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:29 Heat of formation + Delta-G solvation = -117.064206 kcal Electronic energy + Delta-G solvation = -28890.037029 eV Core-core repulsion = 24907.363251 eV Total energy + Delta-G solvation = -3982.673778 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.202 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.91242 -47.89146 -40.67154 -39.53756 -36.20602 -34.92706 -33.10954 -31.52290 -31.00664 -29.79435 -29.21143 -27.04791 -25.19196 -24.47418 -23.19843 -22.21989 -21.62577 -21.42442 -20.35255 -18.46828 -18.19739 -17.94483 -17.53752 -17.08862 -16.72937 -16.50291 -16.41556 -15.71499 -15.23336 -14.90421 -14.84318 -14.54751 -14.43832 -14.36139 -14.23997 -14.14465 -13.84769 -13.70769 -13.37037 -13.28283 -13.21463 -13.14674 -12.77786 -12.71044 -12.52294 -12.37097 -12.29968 -12.17186 -12.01649 -11.82428 -11.74689 -11.44867 -11.41644 -11.22130 -11.16565 -10.91229 -10.46040 -9.49544 -9.12283 -8.10532 -6.21732 1.40690 1.44027 1.51716 2.45270 2.45828 2.73235 2.89246 3.09765 3.21772 3.36260 3.62889 3.70816 3.88927 3.94464 4.04069 4.07048 4.10491 4.16595 4.31499 4.34627 4.41386 4.43960 4.49029 4.56777 4.58491 4.67769 4.72322 4.76836 4.86404 4.89964 4.96386 4.98971 5.04364 5.07971 5.11312 5.16212 5.22895 5.29154 5.32490 5.47259 5.61330 5.85986 5.89440 5.90098 6.05903 6.13052 6.19865 6.36143 6.99350 7.46693 9.00363 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.015803 B = 0.003678 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.429361 B = 7610.121816 C = 8302.364157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.089 3.911 3 H 0.067 0.933 4 C -0.089 4.089 5 C 0.039 3.961 6 C -0.542 4.542 7 H 0.058 0.942 8 C -0.002 4.002 9 N -0.933 5.933 10 Si 0.959 3.041 11 H -0.267 1.267 12 H -0.287 1.287 13 H -0.267 1.267 14 N -0.540 5.540 15 C 0.052 3.948 16 C -0.105 4.105 17 C 0.052 3.948 18 H 0.086 0.914 19 N -0.534 5.534 20 C 0.035 3.965 21 C -0.120 4.120 22 C -0.126 4.126 23 C 0.033 3.967 24 C 0.295 3.705 25 F -0.205 7.205 26 F -0.203 7.203 27 C 0.023 3.977 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.001 0.999 34 H -0.026 1.026 35 H 0.260 0.740 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.104 0.896 39 H 0.055 0.945 40 H 0.081 0.919 41 H 0.062 0.938 42 H 0.094 0.906 43 H 0.067 0.933 44 H 0.083 0.917 45 H 0.074 0.926 46 H 0.051 0.949 47 H 0.061 0.939 48 H 0.087 0.913 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.749 -4.693 -16.856 24.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.019 4.019 3 H 0.085 0.915 4 C -0.126 4.126 5 C 0.002 3.998 6 C -0.580 4.580 7 H 0.076 0.924 8 C -0.199 4.199 9 N -0.573 5.573 10 Si 0.784 3.216 11 H -0.191 1.191 12 H -0.212 1.212 13 H -0.192 1.192 14 N -0.265 5.265 15 C -0.076 4.076 16 C -0.143 4.143 17 C -0.058 4.058 18 H 0.104 0.896 19 N -0.258 5.258 20 C -0.092 4.092 21 C -0.157 4.157 22 C -0.164 4.164 23 C -0.094 4.094 24 C 0.258 3.742 25 F -0.186 7.186 26 F -0.184 7.184 27 C -0.106 4.106 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.020 0.980 34 H -0.008 1.008 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.098 0.902 38 H 0.122 0.878 39 H 0.074 0.926 40 H 0.100 0.900 41 H 0.080 0.920 42 H 0.112 0.888 43 H 0.085 0.915 44 H 0.102 0.898 45 H 0.093 0.907 46 H 0.069 0.931 47 H 0.080 0.920 48 H 0.106 0.894 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.473 -4.667 -16.766 23.288 hybrid contribution -0.311 0.263 0.509 0.652 sum -15.784 -4.404 -16.257 23.083 Atomic orbital electron populations 1.22385 0.94955 1.02968 1.02927 1.21700 0.93902 0.97233 0.89021 0.91503 1.21521 0.96459 0.99358 0.95310 1.18802 0.92146 0.93836 0.94983 1.21780 0.92174 1.35138 1.08883 0.92373 1.25961 0.97520 0.96590 0.99830 1.70140 1.02288 1.46369 1.38545 0.85594 0.76893 0.79365 0.79726 1.19143 1.21229 1.19156 1.61805 1.60373 1.03109 1.01220 1.22242 0.97038 0.89210 0.99088 1.21642 1.02268 0.99157 0.91203 1.22713 0.97420 0.91404 0.94237 0.89609 1.64718 1.55360 1.03713 1.02028 1.23325 0.99380 0.87943 0.98567 1.22479 1.02297 0.97688 0.93286 1.22414 1.02906 0.93695 0.97396 1.22992 0.99584 0.97680 0.89180 1.21294 0.77867 0.91976 0.83031 1.92948 1.94036 1.78946 1.52656 1.93008 1.33449 1.96868 1.95059 1.22902 1.00768 0.97906 0.89020 0.91550 0.91317 0.91187 0.92613 0.92577 0.98027 1.00765 0.93179 0.91653 0.90183 0.87803 0.92597 0.90013 0.92005 0.88768 0.91460 0.89793 0.90709 0.93096 0.92045 0.89417 0.89435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.87 8.43 71.98 0.61 -3.26 16 2 C 0.09 2.83 2.33 44.92 0.10 2.94 16 3 H 0.07 2.28 7.97 -2.39 -0.02 2.26 16 4 C -0.09 -3.53 4.54 30.60 0.14 -3.39 16 5 C 0.04 2.14 4.84 29.85 0.14 2.28 16 6 C -0.54 -31.58 9.11 25.60 0.23 -31.35 16 7 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 8 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 9 N -0.93 -59.59 13.29 21.45 0.28 -59.31 16 10 Si 0.96 45.59 29.54 68.60 2.03 47.62 16 11 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 12 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 13 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 14 N -0.54 -17.32 3.90 -871.08 -3.40 -20.72 16 15 C 0.05 1.38 4.52 86.33 0.39 1.77 16 16 C -0.10 -2.70 4.88 30.65 0.15 -2.55 16 17 C 0.05 1.27 1.49 45.00 0.07 1.34 16 18 H 0.09 1.69 7.85 -2.39 -0.02 1.67 16 19 N -0.53 -12.91 5.00 -857.40 -4.29 -17.20 16 20 C 0.03 0.62 5.17 86.65 0.45 1.07 16 21 C -0.12 -1.78 7.06 31.80 0.22 -1.56 16 22 C -0.13 -1.92 6.93 31.48 0.22 -1.71 16 23 C 0.03 0.70 5.11 86.45 0.44 1.15 16 24 C 0.30 8.80 1.75 30.65 0.05 8.85 16 25 F -0.20 -5.87 14.55 44.97 0.65 -5.21 16 26 F -0.20 -8.07 16.49 44.97 0.74 -7.32 16 27 C 0.02 0.65 4.64 86.32 0.40 1.05 16 28 H 0.07 1.24 6.85 -2.38 -0.02 1.22 16 29 H 0.07 1.40 6.45 -2.39 -0.02 1.39 16 30 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.06 2.14 8.14 -2.39 -0.02 2.13 16 32 H 0.06 2.14 6.33 -2.39 -0.02 2.13 16 33 H 0.00 0.08 7.69 -2.39 -0.02 0.06 16 34 H -0.03 -1.57 8.14 -2.39 -0.02 -1.59 16 35 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 36 H 0.07 1.32 6.57 -2.39 -0.02 1.31 16 37 H 0.08 2.40 6.20 -2.39 -0.01 2.38 16 38 H 0.10 2.07 6.98 -2.39 -0.02 2.05 16 39 H 0.06 1.91 7.91 -2.39 -0.02 1.89 16 40 H 0.08 1.56 7.71 -2.39 -0.02 1.54 16 41 H 0.06 0.91 8.02 -2.39 -0.02 0.89 16 42 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 44 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.05 1.01 7.23 -2.39 -0.02 0.99 16 47 H 0.06 1.54 7.62 -2.39 -0.02 1.52 16 48 H 0.09 2.56 8.00 -2.38 -0.02 2.54 16 49 H 0.09 1.84 6.91 -2.39 -0.02 1.82 16 Total: -1.00 -71.76 369.70 1.02 -70.74 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.91 Total: 14.42 kcal Atomic # 6 Polarization: -27.11 SS G_CDS: 4.08 Total: -23.02 kcal Atomic # 7 Polarization: -89.82 SS G_CDS: -7.40 Total: -97.22 kcal Atomic # 9 Polarization: -13.93 SS G_CDS: 1.40 Total: -12.54 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -71.76 1.02 -70.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172506620.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.324 kcal (2) G-P(sol) polarization free energy of solvation -71.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds