Wall clock time and date at job start Tue Mar 31 2020 11:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46590 * 2 1 4 4 C 1.53000 * 109.47223 * 239.99769 * 2 1 3 5 5 C 1.53004 * 109.47017 * 174.99518 * 4 2 1 6 6 C 1.50699 * 109.46826 * 179.97438 * 5 4 2 7 7 H 1.08000 * 120.00380 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99705 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00001 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00021 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.46785 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47429 * 119.99847 * 10 8 6 13 13 H 1.48498 * 109.47025 * 240.00317 * 10 8 6 14 14 N 1.46902 * 109.47069 * 119.99339 * 2 1 3 15 15 C 1.46846 * 111.00204 * 295.00340 * 14 2 1 16 16 C 1.53032 * 109.52260 * 185.84105 * 15 14 2 17 17 C 1.53124 * 109.28012 * 300.82015 * 16 15 14 18 18 H 1.09003 * 109.52311 * 297.69132 * 17 16 15 19 19 N 1.46890 * 109.52707 * 177.55774 * 17 16 15 20 20 C 1.48533 * 110.99764 * 57.60397 * 19 17 16 21 21 C 1.54943 * 103.22846 * 159.72125 * 20 19 17 22 22 C 1.54591 * 102.92035 * 322.58732 * 21 20 19 23 23 C 1.47906 * 111.00453 * 175.00090 * 19 17 16 24 24 C 1.53119 * 109.15841 * 57.65244 * 17 16 15 25 25 F 1.39906 * 109.50504 * 62.28848 * 24 17 16 26 26 F 1.39905 * 109.50415 * 182.36834 * 24 17 16 27 27 C 1.46846 * 110.99617 * 59.21445 * 14 2 1 28 28 H 1.09005 * 109.47521 * 300.00203 * 1 2 3 29 29 H 1.09000 * 109.47556 * 60.00275 * 1 2 3 30 30 H 1.09001 * 109.46798 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47254 * 294.99674 * 4 2 1 32 32 H 1.09007 * 109.46959 * 55.00119 * 4 2 1 33 33 H 1.08993 * 109.47236 * 300.00166 * 5 4 2 34 34 H 1.08994 * 109.46835 * 60.00147 * 5 4 2 35 35 H 0.96996 * 120.00242 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.45990 * 305.85570 * 15 14 2 37 37 H 1.08997 * 109.46419 * 65.82250 * 15 14 2 38 38 H 1.08999 * 109.50710 * 60.75864 * 16 15 14 39 39 H 1.08996 * 109.50945 * 180.88041 * 16 15 14 40 40 H 1.09000 * 110.67243 * 278.15190 * 20 19 17 41 41 H 1.08999 * 110.67210 * 41.28741 * 20 19 17 42 42 H 1.09003 * 110.72374 * 204.22755 * 21 20 19 43 43 H 1.08998 * 110.87805 * 81.01410 * 21 20 19 44 44 H 1.09002 * 110.30851 * 263.04352 * 22 21 20 45 45 H 1.09001 * 110.39525 * 140.91346 * 22 21 20 46 46 H 1.09006 * 109.90923 * 333.50830 * 23 19 17 47 47 H 1.08990 * 109.91503 * 94.80194 * 23 19 17 48 48 H 1.08996 * 109.46231 * 294.17554 * 27 14 2 49 49 H 1.09004 * 109.46418 * 54.14394 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6132 -1.3137 6 6 4.0672 -1.3242 -2.5438 7 1 3.3688 -1.8047 -3.2129 8 6 5.4186 -1.3612 -2.8150 9 7 6.2691 -0.7766 -1.9999 10 14 6.0413 -2.2419 -4.3401 11 1 4.8913 -2.8135 -5.0858 12 1 6.7647 -1.2780 -5.2077 13 1 6.9629 -3.3350 -3.9388 14 7 2.0196 -0.6924 1.1995 15 6 1.6488 0.0391 2.4176 16 6 2.2965 -0.6291 3.6325 17 6 1.8223 -2.0822 3.7230 18 1 0.7425 -2.1045 3.8703 19 7 2.4857 -2.7457 4.8532 20 6 2.2153 -2.0278 6.1251 21 6 2.5093 -3.0985 7.2059 22 6 1.9787 -4.3981 6.5584 23 6 1.9631 -4.1160 5.0446 24 6 2.1777 -2.8087 2.4229 25 9 3.5673 -2.8233 2.2608 26 9 1.6998 -4.1225 2.4762 27 6 1.5335 -2.0773 1.2430 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.7517 -1.7715 -1.2055 32 1 1.6054 -0.2618 -2.1370 33 1 3.8531 0.4370 -1.3574 34 1 3.9995 -1.0726 -0.4260 35 1 7.2198 -0.8029 -2.1905 36 1 1.9955 1.0697 2.3421 37 1 0.5649 0.0282 2.5320 38 1 3.3809 -0.6062 3.5254 39 1 2.0084 -0.0953 4.5382 40 1 2.8855 -1.1754 6.2359 41 1 1.1742 -1.7087 6.1730 42 1 1.9680 -2.8768 8.1257 43 1 3.5796 -3.1725 7.3983 44 1 0.9709 -4.6135 6.9135 45 1 2.6439 -5.2324 6.7809 46 1 0.9432 -4.1807 4.6653 47 1 2.6008 -4.8323 4.5268 48 1 0.4501 -2.0783 1.3628 49 1 1.7965 -2.5839 0.3143 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172506621.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:32 Heat of formation + Delta-G solvation = -95.885829 kcal Electronic energy + Delta-G solvation = -29027.174455 eV Core-core repulsion = 25045.419040 eV Total energy + Delta-G solvation = -3981.755415 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.202 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.60014 -46.50786 -39.61561 -38.53206 -34.96626 -33.04935 -31.63415 -30.32158 -29.57158 -28.98362 -28.18689 -25.23686 -24.21612 -23.05740 -21.66835 -21.08052 -20.87773 -20.08514 -19.17042 -17.34951 -16.76812 -16.41086 -16.09491 -15.94610 -15.83208 -14.96815 -14.56765 -14.37441 -14.17487 -14.05061 -13.63704 -13.40684 -13.26368 -13.02770 -12.87210 -12.81442 -12.68941 -12.47957 -12.20714 -12.03965 -11.84699 -11.62335 -11.49126 -11.35573 -11.32694 -11.26347 -11.00920 -10.87709 -10.79814 -10.69236 -10.40551 -10.33061 -9.99027 -9.62118 -9.20916 -8.86164 -8.62957 -8.21374 -7.96176 -5.84630 -3.86296 3.39325 3.46688 3.50102 3.52771 3.76817 3.98786 4.28955 4.37460 4.44985 4.57241 4.64843 4.72092 4.84750 5.01007 5.06057 5.15540 5.18388 5.29793 5.30912 5.41299 5.45307 5.50922 5.53200 5.57032 5.58909 5.60579 5.61443 5.69326 5.79270 5.83145 5.86574 5.89185 6.00317 6.10468 6.17407 6.21493 6.31066 6.58737 6.65576 6.78016 6.79347 7.22486 7.27349 7.39282 7.87171 8.08119 8.25277 8.59001 9.22531 9.76452 11.26274 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.016603 B = 0.003805 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.026527 B = 7356.976248 C = 8124.039394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.084 3.916 3 H 0.086 0.914 4 C -0.106 4.106 5 C 0.028 3.972 6 C -0.521 4.521 7 H 0.050 0.950 8 C 0.058 3.942 9 N -0.891 5.891 10 Si 0.885 3.115 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.285 1.285 14 N -0.509 5.509 15 C 0.050 3.950 16 C -0.110 4.110 17 C 0.042 3.958 18 H 0.062 0.938 19 N -0.506 5.506 20 C 0.036 3.964 21 C -0.123 4.123 22 C -0.132 4.132 23 C 0.033 3.967 24 C 0.306 3.694 25 F -0.169 7.169 26 F -0.205 7.205 27 C 0.015 3.985 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.010 0.990 34 H 0.034 0.966 35 H 0.258 0.742 36 H 0.086 0.914 37 H 0.033 0.967 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.044 0.956 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.064 0.936 45 H 0.072 0.928 46 H 0.048 0.952 47 H 0.085 0.915 48 H 0.056 0.944 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.660 -1.332 18.024 22.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.023 4.023 3 H 0.104 0.896 4 C -0.144 4.144 5 C -0.009 4.009 6 C -0.559 4.559 7 H 0.069 0.931 8 C -0.143 4.143 9 N -0.530 5.530 10 Si 0.713 3.287 11 H -0.199 1.199 12 H -0.212 1.212 13 H -0.211 1.211 14 N -0.232 5.232 15 C -0.078 4.078 16 C -0.148 4.148 17 C -0.068 4.068 18 H 0.079 0.921 19 N -0.230 5.230 20 C -0.091 4.091 21 C -0.161 4.161 22 C -0.170 4.170 23 C -0.095 4.095 24 C 0.269 3.731 25 F -0.150 7.150 26 F -0.186 7.186 27 C -0.115 4.115 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.029 0.971 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.105 0.895 37 H 0.051 0.949 38 H 0.113 0.887 39 H 0.094 0.906 40 H 0.105 0.895 41 H 0.062 0.938 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.083 0.917 45 H 0.091 0.909 46 H 0.066 0.934 47 H 0.103 0.897 48 H 0.074 0.926 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -12.377 -1.355 17.893 21.799 hybrid contribution -1.292 -0.655 -0.720 1.617 sum -13.668 -2.009 17.173 22.040 Atomic orbital electron populations 1.22534 0.98668 1.01661 1.01729 1.21915 0.91136 0.98875 0.90402 0.89618 1.21800 1.01219 0.98170 0.93182 1.19020 0.87730 0.96850 0.97283 1.21337 0.91878 1.34230 1.08460 0.93132 1.24985 0.97149 0.95717 0.96434 1.69985 1.02123 1.44189 1.36725 0.86650 0.78853 0.79587 0.83564 1.19922 1.21181 1.21096 1.61938 1.59331 0.99879 1.02089 1.22190 0.97289 0.98734 0.89612 1.21676 1.03806 0.91514 0.97813 1.22811 0.97330 0.96064 0.90625 0.92068 1.64797 1.53750 1.02050 1.02446 1.23249 0.99533 0.97590 0.88736 1.22470 1.02032 0.94283 0.97316 1.22427 1.01232 0.98478 0.94836 1.23042 0.99156 0.91145 0.96137 1.20873 0.77736 0.78559 0.95981 1.93093 1.29288 1.96214 1.96397 1.92958 1.88359 1.40023 1.97305 1.23023 0.97460 0.92078 0.98891 0.93234 0.91861 0.92792 0.93382 0.92940 0.97149 0.94741 0.93267 0.89547 0.94890 0.88661 0.90593 0.89550 0.93794 0.91124 0.90509 0.91688 0.90900 0.93396 0.89691 0.92647 0.86944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.39 8.50 37.16 0.32 -2.07 16 2 C 0.08 1.36 2.35 -67.71 -0.16 1.20 16 3 H 0.09 1.41 8.08 -51.93 -0.42 0.99 16 4 C -0.11 -2.14 4.44 -26.73 -0.12 -2.26 16 5 C 0.03 0.74 4.86 -27.88 -0.14 0.60 16 6 C -0.52 -15.09 9.11 -34.44 -0.31 -15.41 16 7 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 8 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 9 N -0.89 -27.66 13.29 55.43 0.74 -26.92 16 10 Si 0.89 22.34 29.54 -169.99 -5.02 17.32 16 11 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.28 -7.16 7.11 56.52 0.40 -6.75 16 14 N -0.51 -8.14 4.03 -226.69 -0.91 -9.06 16 15 C 0.05 0.63 5.02 -3.84 -0.02 0.61 16 16 C -0.11 -1.34 4.98 -26.65 -0.13 -1.47 16 17 C 0.04 0.53 1.44 -67.59 -0.10 0.44 16 18 H 0.06 0.71 7.96 -51.93 -0.41 0.30 16 19 N -0.51 -6.31 5.00 -222.35 -1.11 -7.42 16 20 C 0.04 0.34 5.32 -1.89 -0.01 0.33 16 21 C -0.12 -1.02 7.06 -24.87 -0.18 -1.20 16 22 C -0.13 -1.16 6.93 -25.38 -0.18 -1.34 16 23 C 0.03 0.38 5.06 -2.75 -0.01 0.37 16 24 C 0.31 4.86 1.73 -26.65 -0.05 4.81 16 25 F -0.17 -3.40 16.48 2.25 0.04 -3.36 16 26 F -0.21 -3.25 14.27 2.25 0.03 -3.22 16 27 C 0.01 0.23 4.13 -3.83 -0.02 0.22 16 28 H 0.05 0.55 6.65 -51.93 -0.35 0.21 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.68 6.52 -51.93 -0.34 0.34 16 31 H 0.05 0.96 6.05 -51.93 -0.31 0.65 16 32 H 0.05 1.03 8.14 -51.92 -0.42 0.61 16 33 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.03 0.98 7.75 -51.93 -0.40 0.58 16 35 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 36 H 0.09 1.04 8.08 -51.93 -0.42 0.62 16 37 H 0.03 0.36 6.73 -51.93 -0.35 0.01 16 38 H 0.09 1.41 7.91 -51.93 -0.41 0.99 16 39 H 0.08 0.73 7.03 -51.93 -0.37 0.36 16 40 H 0.09 0.79 7.71 -51.93 -0.40 0.39 16 41 H 0.04 0.38 8.02 -51.93 -0.42 -0.04 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.05 0.55 7.06 -51.93 -0.37 0.18 16 47 H 0.08 1.12 7.64 -51.93 -0.40 0.72 16 48 H 0.06 0.74 6.62 -51.93 -0.34 0.39 16 49 H 0.11 2.00 5.93 -51.93 -0.31 1.70 16 LS Contribution 369.11 15.07 5.56 5.56 Total: -1.00 -32.06 369.11 -10.38 -42.45 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -8.51 Total: -1.81 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -1.20 Total: -13.53 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: -1.29 Total: -43.40 kcal Atomic # 9 Polarization: -6.65 SS G_CDS: 0.07 Total: -6.58 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.06 -10.38 -42.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172506621.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.441 kcal (2) G-P(sol) polarization free energy of solvation -32.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds