Wall clock time and date at job start Tue Mar 31 2020 11:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46590 * 2 1 4 4 C 1.53000 * 109.47223 * 239.99769 * 2 1 3 5 5 C 1.53004 * 109.47017 * 174.99518 * 4 2 1 6 6 C 1.50699 * 109.46826 * 179.97438 * 5 4 2 7 7 H 1.08000 * 120.00380 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99705 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00001 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00021 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.46785 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47429 * 119.99847 * 10 8 6 13 13 H 1.48498 * 109.47025 * 240.00317 * 10 8 6 14 14 N 1.46902 * 109.47069 * 119.99339 * 2 1 3 15 15 C 1.46846 * 111.00204 * 295.00340 * 14 2 1 16 16 C 1.53032 * 109.52260 * 185.84105 * 15 14 2 17 17 C 1.53124 * 109.28012 * 300.82015 * 16 15 14 18 18 H 1.09003 * 109.52311 * 297.69132 * 17 16 15 19 19 N 1.46890 * 109.52707 * 177.55774 * 17 16 15 20 20 C 1.48533 * 110.99764 * 57.60397 * 19 17 16 21 21 C 1.54943 * 103.22846 * 159.72125 * 20 19 17 22 22 C 1.54591 * 102.92035 * 322.58732 * 21 20 19 23 23 C 1.47906 * 111.00453 * 175.00090 * 19 17 16 24 24 C 1.53119 * 109.15841 * 57.65244 * 17 16 15 25 25 F 1.39906 * 109.50504 * 62.28848 * 24 17 16 26 26 F 1.39905 * 109.50415 * 182.36834 * 24 17 16 27 27 C 1.46846 * 110.99617 * 59.21445 * 14 2 1 28 28 H 1.09005 * 109.47521 * 300.00203 * 1 2 3 29 29 H 1.09000 * 109.47556 * 60.00275 * 1 2 3 30 30 H 1.09001 * 109.46798 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47254 * 294.99674 * 4 2 1 32 32 H 1.09007 * 109.46959 * 55.00119 * 4 2 1 33 33 H 1.08993 * 109.47236 * 300.00166 * 5 4 2 34 34 H 1.08994 * 109.46835 * 60.00147 * 5 4 2 35 35 H 0.96996 * 120.00242 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.45990 * 305.85570 * 15 14 2 37 37 H 1.08997 * 109.46419 * 65.82250 * 15 14 2 38 38 H 1.08999 * 109.50710 * 60.75864 * 16 15 14 39 39 H 1.08996 * 109.50945 * 180.88041 * 16 15 14 40 40 H 1.09000 * 110.67243 * 278.15190 * 20 19 17 41 41 H 1.08999 * 110.67210 * 41.28741 * 20 19 17 42 42 H 1.09003 * 110.72374 * 204.22755 * 21 20 19 43 43 H 1.08998 * 110.87805 * 81.01410 * 21 20 19 44 44 H 1.09002 * 110.30851 * 263.04352 * 22 21 20 45 45 H 1.09001 * 110.39525 * 140.91346 * 22 21 20 46 46 H 1.09006 * 109.90923 * 333.50830 * 23 19 17 47 47 H 1.08990 * 109.91503 * 94.80194 * 23 19 17 48 48 H 1.08996 * 109.46231 * 294.17554 * 27 14 2 49 49 H 1.09004 * 109.46418 * 54.14394 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6132 -1.3137 6 6 4.0672 -1.3242 -2.5438 7 1 3.3688 -1.8047 -3.2129 8 6 5.4186 -1.3612 -2.8150 9 7 6.2691 -0.7766 -1.9999 10 14 6.0413 -2.2419 -4.3401 11 1 4.8913 -2.8135 -5.0858 12 1 6.7647 -1.2780 -5.2077 13 1 6.9629 -3.3350 -3.9388 14 7 2.0196 -0.6924 1.1995 15 6 1.6488 0.0391 2.4176 16 6 2.2965 -0.6291 3.6325 17 6 1.8223 -2.0822 3.7230 18 1 0.7425 -2.1045 3.8703 19 7 2.4857 -2.7457 4.8532 20 6 2.2153 -2.0278 6.1251 21 6 2.5093 -3.0985 7.2059 22 6 1.9787 -4.3981 6.5584 23 6 1.9631 -4.1160 5.0446 24 6 2.1777 -2.8087 2.4229 25 9 3.5673 -2.8233 2.2608 26 9 1.6998 -4.1225 2.4762 27 6 1.5335 -2.0773 1.2430 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.7517 -1.7715 -1.2055 32 1 1.6054 -0.2618 -2.1370 33 1 3.8531 0.4370 -1.3574 34 1 3.9995 -1.0726 -0.4260 35 1 7.2198 -0.8029 -2.1905 36 1 1.9955 1.0697 2.3421 37 1 0.5649 0.0282 2.5320 38 1 3.3809 -0.6062 3.5254 39 1 2.0084 -0.0953 4.5382 40 1 2.8855 -1.1754 6.2359 41 1 1.1742 -1.7087 6.1730 42 1 1.9680 -2.8768 8.1257 43 1 3.5796 -3.1725 7.3983 44 1 0.9709 -4.6135 6.9135 45 1 2.6439 -5.2324 6.7809 46 1 0.9432 -4.1807 4.6653 47 1 2.6008 -4.8323 4.5268 48 1 0.4501 -2.0783 1.3628 49 1 1.7965 -2.5839 0.3143 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172506621.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:31 Heat of formation + Delta-G solvation = -116.520720 kcal Electronic energy + Delta-G solvation = -29028.069251 eV Core-core repulsion = 25045.419040 eV Total energy + Delta-G solvation = -3982.650211 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.202 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.91068 -47.88747 -40.64874 -39.55507 -36.28086 -34.93443 -33.00311 -31.43052 -31.12926 -29.80218 -29.25777 -27.08252 -25.35347 -24.23629 -23.16473 -22.25513 -21.72319 -21.24372 -20.48331 -18.59750 -18.31953 -17.96749 -17.50298 -16.94873 -16.73143 -16.51743 -16.25325 -15.69502 -15.24920 -14.96748 -14.83757 -14.66447 -14.48330 -14.45781 -14.20367 -13.98360 -13.87112 -13.70529 -13.42003 -13.31456 -13.21323 -13.16064 -12.84990 -12.72144 -12.48881 -12.34351 -12.20668 -12.14621 -12.02039 -11.88097 -11.69822 -11.47314 -11.43752 -11.29998 -11.15987 -10.88959 -10.49117 -9.49544 -9.12719 -8.13477 -6.23960 1.37838 1.39326 1.51542 2.42858 2.47666 2.74387 2.88913 3.13168 3.19066 3.36819 3.63166 3.70741 3.87980 3.94228 4.03164 4.06371 4.10761 4.20692 4.31220 4.34578 4.40807 4.47091 4.50710 4.56630 4.58951 4.68871 4.73345 4.75892 4.86584 4.89619 4.96507 4.98366 5.00210 5.04963 5.11885 5.16701 5.25120 5.28583 5.30469 5.44093 5.58589 5.85845 5.87933 5.90177 6.01238 6.09964 6.22881 6.33938 6.96658 7.44142 8.97922 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.016603 B = 0.003805 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.026527 B = 7356.976248 C = 8124.039394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.091 3.909 3 H 0.080 0.920 4 C -0.096 4.096 5 C 0.040 3.960 6 C -0.543 4.543 7 H 0.054 0.946 8 C -0.001 4.001 9 N -0.931 5.931 10 Si 0.958 3.042 11 H -0.262 1.262 12 H -0.276 1.276 13 H -0.282 1.282 14 N -0.540 5.540 15 C 0.051 3.949 16 C -0.103 4.103 17 C 0.053 3.947 18 H 0.085 0.915 19 N -0.533 5.533 20 C 0.036 3.964 21 C -0.119 4.119 22 C -0.127 4.127 23 C 0.032 3.968 24 C 0.292 3.708 25 F -0.203 7.203 26 F -0.209 7.209 27 C 0.022 3.978 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.046 0.954 32 H 0.057 0.943 33 H -0.018 1.018 34 H -0.001 1.001 35 H 0.260 0.740 36 H 0.091 0.909 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.110 0.890 40 H 0.088 0.912 41 H 0.062 0.938 42 H 0.095 0.905 43 H 0.068 0.932 44 H 0.083 0.917 45 H 0.072 0.928 46 H 0.049 0.951 47 H 0.056 0.944 48 H 0.086 0.914 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.173 -0.978 19.104 25.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.017 4.017 3 H 0.098 0.902 4 C -0.134 4.134 5 C 0.003 3.997 6 C -0.581 4.581 7 H 0.073 0.927 8 C -0.199 4.199 9 N -0.571 5.571 10 Si 0.783 3.217 11 H -0.186 1.186 12 H -0.202 1.202 13 H -0.208 1.208 14 N -0.265 5.265 15 C -0.076 4.076 16 C -0.141 4.141 17 C -0.057 4.057 18 H 0.102 0.898 19 N -0.258 5.258 20 C -0.091 4.091 21 C -0.157 4.157 22 C -0.165 4.165 23 C -0.096 4.096 24 C 0.255 3.745 25 F -0.184 7.184 26 F -0.190 7.190 27 C -0.108 4.108 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.000 1.000 34 H 0.017 0.983 35 H 0.069 0.931 36 H 0.109 0.891 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.128 0.872 40 H 0.106 0.894 41 H 0.080 0.920 42 H 0.113 0.887 43 H 0.086 0.914 44 H 0.101 0.899 45 H 0.091 0.909 46 H 0.067 0.933 47 H 0.075 0.925 48 H 0.104 0.896 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.909 -0.997 18.978 24.155 hybrid contribution -0.455 -0.784 -1.048 1.385 sum -15.364 -1.781 17.931 23.680 Atomic orbital electron populations 1.22395 0.95169 1.02400 1.03401 1.21707 0.93754 0.97619 0.88617 0.90184 1.21609 0.96793 0.98940 0.96045 1.18802 0.91969 0.94150 0.94826 1.21824 0.92463 1.34370 1.09411 0.92729 1.25942 0.97488 0.96511 0.99913 1.70131 1.02503 1.45616 1.38855 0.85505 0.78443 0.78334 0.79408 1.18592 1.20157 1.20805 1.61813 1.60888 1.00350 1.03416 1.22280 0.99063 0.98381 0.87908 1.21648 1.01616 0.91645 0.99198 1.22728 0.98446 0.95591 0.88982 0.89773 1.64735 1.54604 1.02767 1.03645 1.23345 1.00634 0.97711 0.87410 1.22480 1.01897 0.93427 0.97883 1.22417 1.02418 0.98880 0.92782 1.22992 0.98346 0.90346 0.97906 1.21394 0.75982 0.78779 0.98320 1.93017 1.32272 1.96402 1.96733 1.92941 1.88147 1.40446 1.97448 1.22897 0.98958 0.91671 0.97247 0.90637 0.91136 0.92440 0.93547 0.92431 0.99970 0.98279 0.93098 0.89090 0.91863 0.92130 0.87195 0.89369 0.91988 0.88651 0.91362 0.89855 0.90891 0.93267 0.92549 0.89644 0.90228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.93 8.50 71.98 0.61 -3.32 16 2 C 0.09 2.86 2.35 44.91 0.11 2.97 16 3 H 0.08 2.61 8.08 -2.38 -0.02 2.59 16 4 C -0.10 -3.96 4.44 30.60 0.14 -3.82 16 5 C 0.04 2.18 4.86 29.85 0.15 2.33 16 6 C -0.54 -32.41 9.11 25.60 0.23 -32.18 16 7 H 0.05 3.13 7.74 -2.91 -0.02 3.11 16 8 C 0.00 -0.07 5.46 84.66 0.46 0.40 16 9 N -0.93 -59.78 13.29 21.45 0.28 -59.50 16 10 Si 0.96 46.61 29.54 68.60 2.03 48.64 16 11 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 13 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 14 N -0.54 -17.20 4.03 -871.12 -3.51 -20.72 16 15 C 0.05 1.18 5.02 86.32 0.43 1.61 16 16 C -0.10 -2.35 4.98 30.65 0.15 -2.20 16 17 C 0.05 1.27 1.44 45.00 0.06 1.34 16 18 H 0.08 1.67 7.96 -2.39 -0.02 1.65 16 19 N -0.53 -12.83 5.00 -857.39 -4.29 -17.11 16 20 C 0.04 0.59 5.32 86.65 0.46 1.05 16 21 C -0.12 -1.69 7.06 31.80 0.22 -1.47 16 22 C -0.13 -2.02 6.93 31.47 0.22 -1.80 16 23 C 0.03 0.72 5.06 86.45 0.44 1.15 16 24 C 0.29 9.45 1.73 30.65 0.05 9.50 16 25 F -0.20 -8.71 16.48 44.97 0.74 -7.97 16 26 F -0.21 -6.76 14.27 44.97 0.64 -6.11 16 27 C 0.02 0.67 4.13 86.33 0.36 1.03 16 28 H 0.07 1.34 6.65 -2.38 -0.02 1.33 16 29 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 30 H 0.06 1.26 6.52 -2.39 -0.02 1.25 16 31 H 0.05 1.91 6.05 -2.39 -0.01 1.89 16 32 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 33 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 34 H 0.00 -0.08 7.75 -2.39 -0.02 -0.09 16 35 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 36 H 0.09 2.01 8.08 -2.39 -0.02 1.99 16 37 H 0.06 1.10 6.73 -2.39 -0.02 1.09 16 38 H 0.06 1.82 7.91 -2.39 -0.02 1.80 16 39 H 0.11 1.75 7.03 -2.39 -0.02 1.73 16 40 H 0.09 1.42 7.71 -2.39 -0.02 1.40 16 41 H 0.06 0.82 8.02 -2.39 -0.02 0.80 16 42 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.05 1.07 7.06 -2.38 -0.02 1.05 16 47 H 0.06 1.55 7.64 -2.39 -0.02 1.53 16 48 H 0.09 2.09 6.62 -2.39 -0.02 2.07 16 49 H 0.08 2.96 5.93 -2.38 -0.01 2.95 16 Total: -1.00 -73.71 369.11 0.91 -72.81 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 0.92 Total: 13.37 kcal Atomic # 6 Polarization: -27.50 SS G_CDS: 4.10 Total: -23.40 kcal Atomic # 7 Polarization: -89.81 SS G_CDS: -7.51 Total: -97.33 kcal Atomic # 9 Polarization: -15.47 SS G_CDS: 1.38 Total: -14.08 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -73.71 0.91 -72.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172506621.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.713 kcal (2) G-P(sol) polarization free energy of solvation -73.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds