Wall clock time and date at job start Tue Mar 31 2020 11:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46697 * 2 1 4 4 C 1.52995 * 109.46978 * 119.99581 * 2 1 3 5 5 C 1.53008 * 109.47167 * 184.99672 * 4 2 1 6 6 C 1.50692 * 109.47096 * 179.97438 * 5 4 2 7 7 H 1.07994 * 120.00431 * 0.02562 * 6 5 4 8 8 C 1.37883 * 119.99779 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99630 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99973 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47095 * 90.00068 * 10 8 6 12 12 H 1.48503 * 109.47086 * 209.99768 * 10 8 6 13 13 H 1.48497 * 109.47452 * 330.00081 * 10 8 6 14 14 N 1.46904 * 109.47103 * 239.99524 * 2 1 3 15 15 C 1.46850 * 110.99822 * 70.00021 * 14 2 1 16 16 C 1.53034 * 109.52275 * 174.15941 * 15 14 2 17 17 C 1.53121 * 109.31122 * 59.16169 * 16 15 14 18 18 H 1.09002 * 109.52556 * 62.26602 * 17 16 15 19 19 N 1.46898 * 109.52376 * 182.45835 * 17 16 15 20 20 C 1.48529 * 110.99871 * 182.47398 * 19 17 16 21 21 C 1.54944 * 103.22185 * 159.72239 * 20 19 17 22 22 C 1.54589 * 102.92447 * 322.58821 * 21 20 19 23 23 C 1.47898 * 111.00026 * 299.87848 * 19 17 16 24 24 C 1.53121 * 109.15782 * 302.40404 * 17 16 15 25 25 F 1.39904 * 109.46879 * 297.65645 * 24 17 16 26 26 F 1.39900 * 109.54053 * 177.57905 * 24 17 16 27 27 C 1.46841 * 110.99976 * 305.79066 * 14 2 1 28 28 H 1.08997 * 109.47187 * 299.99919 * 1 2 3 29 29 H 1.09004 * 109.47334 * 60.00782 * 1 2 3 30 30 H 1.09005 * 109.47049 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47526 * 305.00106 * 4 2 1 32 32 H 1.09006 * 109.47112 * 65.00727 * 4 2 1 33 33 H 1.08993 * 109.47251 * 300.00602 * 5 4 2 34 34 H 1.08998 * 109.46325 * 60.00201 * 5 4 2 35 35 H 0.97010 * 119.99341 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.46034 * 54.13910 * 15 14 2 37 37 H 1.09005 * 109.45380 * 294.17020 * 15 14 2 38 38 H 1.09007 * 109.50439 * 179.11957 * 16 15 14 39 39 H 1.08993 * 109.50384 * 299.19731 * 16 15 14 40 40 H 1.09001 * 110.67291 * 278.15642 * 20 19 17 41 41 H 1.08998 * 110.66886 * 41.29363 * 20 19 17 42 42 H 1.09005 * 110.71822 * 204.22882 * 21 20 19 43 43 H 1.08999 * 110.87735 * 81.01965 * 21 20 19 44 44 H 1.09005 * 110.30996 * 263.04321 * 22 21 20 45 45 H 1.08996 * 110.39349 * 140.91791 * 22 21 20 46 46 H 1.09004 * 109.91778 * 333.50368 * 23 19 17 47 47 H 1.09001 * 109.92117 * 94.60372 * 23 19 17 48 48 H 1.08996 * 109.46616 * 305.85630 * 27 14 2 49 49 H 1.09001 * 109.46550 * 65.83775 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5649 -0.6133 1.3137 6 6 4.0671 -1.3230 2.5445 7 1 3.3687 -1.8034 3.2136 8 6 5.4184 -1.3591 2.8163 9 7 6.2689 -0.7745 2.0012 10 14 6.0410 -2.2395 4.3416 11 1 6.3217 -3.6603 4.0132 12 1 7.2870 -1.5858 4.8165 13 1 5.0095 -2.1724 5.4077 14 7 2.0197 -0.6926 -1.1994 15 6 1.7530 0.0968 -2.4086 16 6 2.4025 -0.5825 -3.6164 17 6 1.8319 -1.9951 -3.7703 18 1 0.7603 -1.9364 -3.9606 19 7 2.4947 -2.6727 -4.8926 20 6 1.9237 -4.0266 -5.1091 21 6 2.3276 -4.3523 -6.5691 22 6 2.1848 -2.9871 -7.2801 23 6 2.2794 -1.9371 -6.1576 24 6 2.0793 -2.7804 -2.4793 25 9 3.4563 -2.8992 -2.2623 26 9 1.5124 -4.0546 -2.5907 27 6 1.4392 -2.0373 -1.3044 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.6054 -0.2616 2.1369 32 1 1.7517 -1.7715 1.2056 33 1 3.9994 -1.0728 0.4260 34 1 3.8531 0.4370 1.3573 35 1 7.2195 -0.7996 2.1927 36 1 2.1681 1.0974 -2.2880 37 1 0.6767 0.1667 -2.5665 38 1 2.1912 -0.0047 -4.5162 39 1 3.4804 -0.6399 -3.4656 40 1 2.3649 -4.7452 -4.4184 41 1 0.8388 -4.0077 -5.0053 42 1 1.6480 -5.0861 -7.0027 43 1 3.3573 -4.7066 -6.6174 44 1 1.2186 -2.9202 -7.7803 45 1 2.9925 -2.8467 -7.9984 46 1 1.3515 -1.3677 -6.1027 47 1 3.1170 -1.2649 -6.3435 48 1 1.6263 -2.5868 -0.3818 49 1 0.3645 -1.9573 -1.4678 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172506622.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:35 Heat of formation + Delta-G solvation = -95.856134 kcal Electronic energy + Delta-G solvation = -29006.845891 eV Core-core repulsion = 25025.091764 eV Total energy + Delta-G solvation = -3981.754127 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.202 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.64766 -46.54129 -39.60500 -38.52387 -34.96942 -33.05295 -31.64204 -30.30505 -29.54286 -29.00193 -28.20821 -25.23256 -24.20440 -23.07141 -21.63357 -21.19328 -20.86355 -19.97048 -19.21148 -17.37411 -16.82732 -16.67251 -16.07881 -15.91821 -15.47540 -14.99443 -14.67290 -14.37522 -14.23719 -14.01925 -13.65449 -13.41505 -13.32574 -12.99756 -12.88302 -12.71867 -12.65959 -12.53669 -12.22605 -12.09080 -11.86913 -11.64427 -11.51547 -11.36750 -11.30895 -11.18583 -10.99471 -10.85644 -10.79041 -10.72532 -10.42127 -10.33536 -9.99116 -9.62192 -9.20107 -8.87211 -8.63222 -8.20564 -7.95868 -5.84081 -3.85578 3.40771 3.46716 3.49245 3.51549 3.76079 3.97384 4.27043 4.37353 4.46001 4.57657 4.63513 4.68970 4.83483 5.00670 5.07368 5.15078 5.17940 5.30180 5.31162 5.41466 5.44435 5.51433 5.52751 5.56910 5.57608 5.61118 5.62411 5.67967 5.79285 5.81262 5.86707 5.93730 5.97235 6.08776 6.17709 6.22944 6.32328 6.59281 6.65287 6.77926 6.79235 7.23645 7.27264 7.39632 7.87450 8.09112 8.26462 8.59869 9.23038 9.76976 11.26819 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.016636 B = 0.003773 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.651890 B = 7419.488438 C = 8159.177160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.084 3.916 3 H 0.085 0.915 4 C -0.104 4.104 5 C 0.029 3.971 6 C -0.521 4.521 7 H 0.050 0.950 8 C 0.058 3.942 9 N -0.891 5.891 10 Si 0.886 3.114 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.276 1.276 14 N -0.509 5.509 15 C 0.051 3.949 16 C -0.110 4.110 17 C 0.042 3.958 18 H 0.061 0.939 19 N -0.506 5.506 20 C 0.030 3.970 21 C -0.124 4.124 22 C -0.131 4.131 23 C 0.038 3.962 24 C 0.305 3.695 25 F -0.169 7.169 26 F -0.205 7.205 27 C 0.017 3.983 28 H 0.062 0.938 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.047 0.953 33 H 0.034 0.966 34 H 0.009 0.991 35 H 0.258 0.742 36 H 0.087 0.913 37 H 0.032 0.968 38 H 0.075 0.925 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.045 0.955 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.065 0.935 45 H 0.072 0.928 46 H 0.044 0.956 47 H 0.083 0.917 48 H 0.110 0.890 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.545 -1.198 -18.067 22.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.023 4.023 3 H 0.103 0.897 4 C -0.142 4.142 5 C -0.008 4.008 6 C -0.559 4.559 7 H 0.068 0.932 8 C -0.143 4.143 9 N -0.531 5.531 10 Si 0.714 3.286 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.201 1.201 14 N -0.232 5.232 15 C -0.078 4.078 16 C -0.148 4.148 17 C -0.068 4.068 18 H 0.079 0.921 19 N -0.230 5.230 20 C -0.098 4.098 21 C -0.162 4.162 22 C -0.169 4.169 23 C -0.090 4.090 24 C 0.268 3.732 25 F -0.150 7.150 26 F -0.186 7.186 27 C -0.113 4.113 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.028 0.972 35 H 0.068 0.932 36 H 0.105 0.895 37 H 0.050 0.950 38 H 0.094 0.906 39 H 0.114 0.886 40 H 0.110 0.890 41 H 0.064 0.936 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.083 0.917 45 H 0.091 0.909 46 H 0.062 0.938 47 H 0.101 0.899 48 H 0.128 0.872 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.266 -1.260 -17.911 21.745 hybrid contribution -1.301 -0.504 0.625 1.529 sum -13.568 -1.764 -17.285 22.045 Atomic orbital electron populations 1.22535 0.98627 1.01716 1.01687 1.21917 0.91162 0.98765 0.90482 0.89687 1.21760 1.01175 0.98166 0.93065 1.19009 0.87777 0.96769 0.97256 1.21301 0.91873 1.34295 1.08444 0.93193 1.24983 0.97141 0.95712 0.96445 1.69982 1.02156 1.44141 1.36796 0.86704 0.78270 0.79935 0.83706 1.20768 1.21355 1.20088 1.61933 1.58391 1.00552 1.02355 1.22191 0.97795 0.98066 0.89715 1.21666 1.03389 0.91936 0.97782 1.22810 0.97568 0.95737 0.90661 0.92100 1.64808 1.53106 1.02401 1.02707 1.23475 0.97685 0.91328 0.97267 1.22500 1.02346 0.96734 0.94624 1.22397 1.01948 0.94869 0.97673 1.22871 1.00682 0.96606 0.88826 1.20892 0.77128 0.79403 0.95808 1.93096 1.30328 1.95910 1.95649 1.92949 1.85191 1.43581 1.96904 1.22997 0.96823 0.92761 0.98704 0.91849 0.93336 0.92677 0.93000 0.93454 0.94722 0.97227 0.93231 0.89491 0.94989 0.90616 0.88627 0.88980 0.93640 0.91126 0.90550 0.91665 0.90884 0.93800 0.89909 0.87218 0.92543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.38 8.45 37.16 0.31 -2.07 16 2 C 0.08 1.36 2.31 -67.71 -0.16 1.20 16 3 H 0.09 1.39 7.99 -51.93 -0.41 0.98 16 4 C -0.10 -2.10 4.54 -26.73 -0.12 -2.22 16 5 C 0.03 0.76 4.86 -27.88 -0.14 0.62 16 6 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16 7 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 8 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 9 N -0.89 -27.67 13.29 55.43 0.74 -26.93 16 10 Si 0.89 22.35 29.54 -169.99 -5.02 17.33 16 11 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 N -0.51 -8.13 4.00 -226.69 -0.91 -9.04 16 15 C 0.05 0.64 5.13 -3.83 -0.02 0.62 16 16 C -0.11 -1.35 5.10 -26.65 -0.14 -1.48 16 17 C 0.04 0.54 1.40 -67.59 -0.09 0.44 16 18 H 0.06 0.70 8.01 -51.93 -0.42 0.29 16 19 N -0.51 -6.30 5.00 -222.35 -1.11 -7.41 16 20 C 0.03 0.34 4.93 -1.90 -0.01 0.33 16 21 C -0.12 -1.12 7.06 -24.87 -0.18 -1.30 16 22 C -0.13 -1.06 6.93 -25.38 -0.18 -1.24 16 23 C 0.04 0.36 5.46 -2.75 -0.02 0.35 16 24 C 0.30 4.77 1.70 -26.65 -0.05 4.72 16 25 F -0.17 -3.35 16.48 2.25 0.04 -3.32 16 26 F -0.21 -3.16 14.11 2.25 0.03 -3.13 16 27 C 0.02 0.26 4.04 -3.83 -0.02 0.24 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.54 6.81 -51.93 -0.35 0.19 16 30 H 0.05 0.69 6.46 -51.93 -0.34 0.36 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.05 0.95 6.22 -51.93 -0.32 0.63 16 33 H 0.03 0.99 7.75 -51.93 -0.40 0.59 16 34 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 36 H 0.09 1.07 8.02 -51.93 -0.42 0.65 16 37 H 0.03 0.35 6.87 -51.93 -0.36 0.00 16 38 H 0.08 0.74 7.16 -51.93 -0.37 0.37 16 39 H 0.10 1.44 7.91 -51.93 -0.41 1.02 16 40 H 0.09 1.21 6.88 -51.93 -0.36 0.85 16 41 H 0.05 0.50 7.90 -51.93 -0.41 0.09 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.04 0.39 7.53 -51.93 -0.39 0.00 16 47 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 48 H 0.11 1.90 6.12 -51.93 -0.32 1.58 16 49 H 0.06 0.74 6.58 -51.93 -0.34 0.39 16 LS Contribution 369.60 15.07 5.57 5.57 Total: -1.00 -31.97 369.60 -10.40 -42.37 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -8.54 Total: -1.86 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: -1.20 Total: -13.59 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: -1.28 Total: -43.38 kcal Atomic # 9 Polarization: -6.51 SS G_CDS: 0.07 Total: -6.44 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.97 -10.40 -42.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172506622.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.483 kcal (2) G-P(sol) polarization free energy of solvation -31.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds