Wall clock time and date at job start Tue Mar 31 2020 11:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46697 * 2 1 4 4 C 1.52995 * 109.46978 * 119.99581 * 2 1 3 5 5 C 1.53008 * 109.47167 * 184.99672 * 4 2 1 6 6 C 1.50692 * 109.47096 * 179.97438 * 5 4 2 7 7 H 1.07994 * 120.00431 * 0.02562 * 6 5 4 8 8 C 1.37883 * 119.99779 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99630 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99973 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47095 * 90.00068 * 10 8 6 12 12 H 1.48503 * 109.47086 * 209.99768 * 10 8 6 13 13 H 1.48497 * 109.47452 * 330.00081 * 10 8 6 14 14 N 1.46904 * 109.47103 * 239.99524 * 2 1 3 15 15 C 1.46850 * 110.99822 * 70.00021 * 14 2 1 16 16 C 1.53034 * 109.52275 * 174.15941 * 15 14 2 17 17 C 1.53121 * 109.31122 * 59.16169 * 16 15 14 18 18 H 1.09002 * 109.52556 * 62.26602 * 17 16 15 19 19 N 1.46898 * 109.52376 * 182.45835 * 17 16 15 20 20 C 1.48529 * 110.99871 * 182.47398 * 19 17 16 21 21 C 1.54944 * 103.22185 * 159.72239 * 20 19 17 22 22 C 1.54589 * 102.92447 * 322.58821 * 21 20 19 23 23 C 1.47898 * 111.00026 * 299.87848 * 19 17 16 24 24 C 1.53121 * 109.15782 * 302.40404 * 17 16 15 25 25 F 1.39904 * 109.46879 * 297.65645 * 24 17 16 26 26 F 1.39900 * 109.54053 * 177.57905 * 24 17 16 27 27 C 1.46841 * 110.99976 * 305.79066 * 14 2 1 28 28 H 1.08997 * 109.47187 * 299.99919 * 1 2 3 29 29 H 1.09004 * 109.47334 * 60.00782 * 1 2 3 30 30 H 1.09005 * 109.47049 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47526 * 305.00106 * 4 2 1 32 32 H 1.09006 * 109.47112 * 65.00727 * 4 2 1 33 33 H 1.08993 * 109.47251 * 300.00602 * 5 4 2 34 34 H 1.08998 * 109.46325 * 60.00201 * 5 4 2 35 35 H 0.97010 * 119.99341 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.46034 * 54.13910 * 15 14 2 37 37 H 1.09005 * 109.45380 * 294.17020 * 15 14 2 38 38 H 1.09007 * 109.50439 * 179.11957 * 16 15 14 39 39 H 1.08993 * 109.50384 * 299.19731 * 16 15 14 40 40 H 1.09001 * 110.67291 * 278.15642 * 20 19 17 41 41 H 1.08998 * 110.66886 * 41.29363 * 20 19 17 42 42 H 1.09005 * 110.71822 * 204.22882 * 21 20 19 43 43 H 1.08999 * 110.87735 * 81.01965 * 21 20 19 44 44 H 1.09005 * 110.30996 * 263.04321 * 22 21 20 45 45 H 1.08996 * 110.39349 * 140.91791 * 22 21 20 46 46 H 1.09004 * 109.91778 * 333.50368 * 23 19 17 47 47 H 1.09001 * 109.92117 * 94.60372 * 23 19 17 48 48 H 1.08996 * 109.46616 * 305.85630 * 27 14 2 49 49 H 1.09001 * 109.46550 * 65.83775 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5649 -0.6133 1.3137 6 6 4.0671 -1.3230 2.5445 7 1 3.3687 -1.8034 3.2136 8 6 5.4184 -1.3591 2.8163 9 7 6.2689 -0.7745 2.0012 10 14 6.0410 -2.2395 4.3416 11 1 6.3217 -3.6603 4.0132 12 1 7.2870 -1.5858 4.8165 13 1 5.0095 -2.1724 5.4077 14 7 2.0197 -0.6926 -1.1994 15 6 1.7530 0.0968 -2.4086 16 6 2.4025 -0.5825 -3.6164 17 6 1.8319 -1.9951 -3.7703 18 1 0.7603 -1.9364 -3.9606 19 7 2.4947 -2.6727 -4.8926 20 6 1.9237 -4.0266 -5.1091 21 6 2.3276 -4.3523 -6.5691 22 6 2.1848 -2.9871 -7.2801 23 6 2.2794 -1.9371 -6.1576 24 6 2.0793 -2.7804 -2.4793 25 9 3.4563 -2.8992 -2.2623 26 9 1.5124 -4.0546 -2.5907 27 6 1.4392 -2.0373 -1.3044 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.6054 -0.2616 2.1369 32 1 1.7517 -1.7715 1.2056 33 1 3.9994 -1.0728 0.4260 34 1 3.8531 0.4370 1.3573 35 1 7.2195 -0.7996 2.1927 36 1 2.1681 1.0974 -2.2880 37 1 0.6767 0.1667 -2.5665 38 1 2.1912 -0.0047 -4.5162 39 1 3.4804 -0.6399 -3.4656 40 1 2.3649 -4.7452 -4.4184 41 1 0.8388 -4.0077 -5.0053 42 1 1.6480 -5.0861 -7.0027 43 1 3.3573 -4.7066 -6.6174 44 1 1.2186 -2.9202 -7.7803 45 1 2.9925 -2.8467 -7.9984 46 1 1.3515 -1.3677 -6.1027 47 1 3.1170 -1.2649 -6.3435 48 1 1.6263 -2.5868 -0.3818 49 1 0.3645 -1.9573 -1.4678 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172506622.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:34 Heat of formation + Delta-G solvation = -116.306626 kcal Electronic energy + Delta-G solvation = -29007.732691 eV Core-core repulsion = 25025.091764 eV Total energy + Delta-G solvation = -3982.640927 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.202 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.93090 -47.89572 -40.63468 -39.54501 -36.28521 -34.93732 -33.01550 -31.40590 -31.11429 -29.81174 -29.27303 -27.07458 -25.35119 -24.22681 -23.17563 -22.21683 -21.90160 -21.05316 -20.51736 -18.60362 -18.30674 -18.00256 -17.72673 -16.92887 -16.51850 -16.40867 -16.24775 -15.77660 -15.28751 -14.93232 -14.89118 -14.64355 -14.48641 -14.44421 -14.20125 -14.02793 -13.85302 -13.71643 -13.37238 -13.33250 -13.21132 -13.15725 -12.86968 -12.74624 -12.48384 -12.35277 -12.19318 -12.13781 -12.02418 -11.85366 -11.70185 -11.48041 -11.44627 -11.29686 -11.16088 -10.90147 -10.48081 -9.49077 -9.12582 -8.12915 -6.23297 1.38375 1.40638 1.50791 2.43344 2.46695 2.74424 2.88120 3.12258 3.19569 3.37032 3.62378 3.71055 3.85529 3.94311 4.02859 4.08027 4.11461 4.21154 4.30787 4.33257 4.41141 4.46827 4.50097 4.55877 4.60115 4.67235 4.73335 4.76403 4.85909 4.90280 4.96048 4.98354 5.00291 5.04813 5.11201 5.15842 5.25752 5.28892 5.30180 5.44769 5.58790 5.85219 5.88534 5.90559 6.02023 6.10648 6.22579 6.34664 6.97092 7.44626 8.98282 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.016636 B = 0.003773 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.651890 B = 7419.488438 C = 8159.177160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.091 3.909 3 H 0.080 0.920 4 C -0.094 4.094 5 C 0.040 3.960 6 C -0.543 4.543 7 H 0.054 0.946 8 C -0.001 4.001 9 N -0.930 5.930 10 Si 0.958 3.042 11 H -0.277 1.277 12 H -0.281 1.281 13 H -0.262 1.262 14 N -0.541 5.541 15 C 0.052 3.948 16 C -0.103 4.103 17 C 0.052 3.948 18 H 0.085 0.915 19 N -0.532 5.532 20 C 0.029 3.971 21 C -0.121 4.121 22 C -0.125 4.125 23 C 0.036 3.964 24 C 0.292 3.708 25 F -0.203 7.203 26 F -0.207 7.207 27 C 0.023 3.977 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.044 0.956 33 H -0.001 1.001 34 H -0.018 1.018 35 H 0.260 0.740 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.108 0.892 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.053 0.947 42 H 0.088 0.912 43 H 0.065 0.935 44 H 0.084 0.916 45 H 0.080 0.920 46 H 0.060 0.940 47 H 0.081 0.919 48 H 0.080 0.920 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.984 -0.862 -19.094 24.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.017 4.017 3 H 0.098 0.902 4 C -0.132 4.132 5 C 0.003 3.997 6 C -0.582 4.582 7 H 0.073 0.927 8 C -0.198 4.198 9 N -0.571 5.571 10 Si 0.783 3.217 11 H -0.203 1.203 12 H -0.206 1.206 13 H -0.186 1.186 14 N -0.265 5.265 15 C -0.075 4.075 16 C -0.141 4.141 17 C -0.057 4.057 18 H 0.102 0.898 19 N -0.257 5.257 20 C -0.099 4.099 21 C -0.159 4.159 22 C -0.163 4.163 23 C -0.091 4.091 24 C 0.255 3.745 25 F -0.184 7.184 26 F -0.188 7.188 27 C -0.107 4.107 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.017 0.983 34 H 0.000 1.000 35 H 0.069 0.931 36 H 0.107 0.893 37 H 0.081 0.919 38 H 0.126 0.874 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.107 0.893 43 H 0.084 0.916 44 H 0.102 0.898 45 H 0.099 0.901 46 H 0.078 0.922 47 H 0.099 0.901 48 H 0.098 0.902 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.724 -0.922 -18.944 24.011 hybrid contribution -0.490 -0.630 0.936 1.230 sum -15.214 -1.552 -18.008 23.626 Atomic orbital electron populations 1.22395 0.95150 1.02459 1.03348 1.21704 0.93767 0.97527 0.88686 0.90199 1.21569 0.96769 0.98875 0.95964 1.18794 0.91994 0.94105 0.94799 1.21800 0.92482 1.34460 1.09423 0.92739 1.25942 0.97475 0.96493 0.99936 1.70131 1.02505 1.45556 1.38903 0.85557 0.77964 0.78503 0.79674 1.20276 1.20641 1.18582 1.61797 1.59858 1.01251 1.03628 1.22264 0.99657 0.97484 0.88136 1.21627 1.01058 0.92330 0.99059 1.22731 0.98798 0.95026 0.89191 0.89756 1.64754 1.53925 1.03155 1.03856 1.23424 0.97773 0.90495 0.98177 1.22491 1.02156 0.97977 0.93281 1.22398 1.03327 0.93369 0.97188 1.22954 1.01390 0.96926 0.87862 1.21381 0.75379 0.79735 0.97966 1.93020 1.33252 1.96130 1.96011 1.92938 1.84948 1.43882 1.97022 1.22894 0.98379 0.92151 0.97234 0.91118 0.90766 0.92318 0.92481 0.93711 0.98267 0.99999 0.93103 0.89301 0.91883 0.87423 0.92251 0.91733 0.92910 0.89306 0.91592 0.89783 0.90142 0.92165 0.90105 0.90186 0.89463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.94 8.45 71.98 0.61 -3.33 16 2 C 0.09 2.87 2.31 44.91 0.10 2.97 16 3 H 0.08 2.59 7.99 -2.39 -0.02 2.57 16 4 C -0.09 -3.87 4.54 30.60 0.14 -3.73 16 5 C 0.04 2.21 4.86 29.85 0.15 2.36 16 6 C -0.54 -32.49 9.11 25.60 0.23 -32.25 16 7 H 0.05 3.12 7.74 -2.91 -0.02 3.10 16 8 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 9 N -0.93 -59.73 13.29 21.45 0.28 -59.44 16 10 Si 0.96 46.57 29.54 68.60 2.03 48.60 16 11 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 12 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 13 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 14 N -0.54 -17.22 4.00 -871.12 -3.48 -20.70 16 15 C 0.05 1.22 5.13 86.32 0.44 1.66 16 16 C -0.10 -2.40 5.10 30.65 0.16 -2.24 16 17 C 0.05 1.27 1.40 45.00 0.06 1.33 16 18 H 0.08 1.66 8.01 -2.39 -0.02 1.64 16 19 N -0.53 -12.80 5.00 -857.37 -4.29 -17.08 16 20 C 0.03 0.64 4.93 86.65 0.43 1.07 16 21 C -0.12 -2.02 7.06 31.80 0.22 -1.79 16 22 C -0.12 -1.70 6.93 31.47 0.22 -1.48 16 23 C 0.04 0.60 5.46 86.45 0.47 1.07 16 24 C 0.29 9.27 1.70 30.65 0.05 9.32 16 25 F -0.20 -8.59 16.48 44.97 0.74 -7.85 16 26 F -0.21 -6.47 14.11 44.97 0.63 -5.83 16 27 C 0.02 0.69 4.04 86.33 0.35 1.04 16 28 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.07 1.33 6.81 -2.39 -0.02 1.31 16 30 H 0.06 1.29 6.46 -2.38 -0.02 1.28 16 31 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.04 1.85 6.22 -2.38 -0.01 1.83 16 33 H 0.00 -0.07 7.75 -2.39 -0.02 -0.09 16 34 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 35 H 0.26 15.73 8.31 -92.70 -0.77 14.96 16 36 H 0.09 2.04 8.02 -2.39 -0.02 2.02 16 37 H 0.06 1.11 6.87 -2.38 -0.02 1.10 16 38 H 0.11 1.81 7.16 -2.38 -0.02 1.79 16 39 H 0.06 1.83 7.91 -2.39 -0.02 1.81 16 40 H 0.06 1.76 6.88 -2.39 -0.02 1.74 16 41 H 0.05 1.07 7.90 -2.39 -0.02 1.06 16 42 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 43 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 45 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.06 0.83 7.53 -2.38 -0.02 0.81 16 47 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.08 2.87 6.12 -2.39 -0.01 2.86 16 49 H 0.09 2.06 6.58 -2.39 -0.02 2.05 16 Total: -1.00 -73.24 369.60 0.93 -72.31 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 0.91 Total: 13.59 kcal Atomic # 6 Polarization: -27.70 SS G_CDS: 4.10 Total: -23.60 kcal Atomic # 7 Polarization: -89.74 SS G_CDS: -7.48 Total: -97.22 kcal Atomic # 9 Polarization: -15.05 SS G_CDS: 1.38 Total: -13.68 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -73.24 0.93 -72.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172506622.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.996 kcal (2) G-P(sol) polarization free energy of solvation -73.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds