Wall clock time and date at job start Tue Mar 31 2020 11:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46590 * 2 1 4 4 C 1.53000 * 109.47223 * 239.99769 * 2 1 3 5 5 C 1.53004 * 109.47017 * 174.99518 * 4 2 1 6 6 C 1.50699 * 109.46826 * 179.97438 * 5 4 2 7 7 H 1.08000 * 120.00380 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99705 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00001 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00021 * 180.02562 * 8 6 5 11 11 H 1.48492 * 109.47393 * 89.99736 * 10 8 6 12 12 H 1.48495 * 109.47337 * 210.00189 * 10 8 6 13 13 H 1.48510 * 109.46932 * 330.00019 * 10 8 6 14 14 N 1.46902 * 109.47069 * 119.99339 * 2 1 3 15 15 C 1.46846 * 110.99617 * 59.21445 * 14 2 1 16 16 C 1.53040 * 109.51964 * 174.15808 * 15 14 2 17 17 C 1.53119 * 109.28089 * 59.17912 * 16 15 14 18 18 H 1.09003 * 109.56984 * 62.28008 * 17 16 15 19 19 N 1.46890 * 109.52218 * 182.43945 * 17 16 15 20 20 C 1.48533 * 110.99764 * 177.28627 * 19 17 16 21 21 C 1.54943 * 103.22846 * 159.72125 * 20 19 17 22 22 C 1.54591 * 102.92035 * 322.58732 * 21 20 19 23 23 C 1.47906 * 111.00453 * 294.68320 * 19 17 16 24 24 C 1.53124 * 109.15841 * 302.34776 * 17 16 15 25 25 F 1.39904 * 109.49814 * 297.70973 * 24 17 16 26 26 F 1.39896 * 109.53404 * 177.61777 * 24 17 16 27 27 C 1.46846 * 111.00204 * 295.00340 * 14 2 1 28 28 H 1.09000 * 109.47556 * 60.00275 * 1 2 3 29 29 H 1.09001 * 109.46798 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47521 * 300.00203 * 1 2 3 31 31 H 1.08993 * 109.47254 * 294.99674 * 4 2 1 32 32 H 1.09007 * 109.46959 * 55.00119 * 4 2 1 33 33 H 1.08993 * 109.47236 * 300.00166 * 5 4 2 34 34 H 1.08994 * 109.46835 * 60.00147 * 5 4 2 35 35 H 0.96996 * 120.00242 * 179.97438 * 9 8 6 36 36 H 1.08996 * 109.46231 * 294.17554 * 15 14 2 37 37 H 1.09004 * 109.46418 * 54.14394 * 15 14 2 38 38 H 1.09004 * 109.50602 * 299.23671 * 16 15 14 39 39 H 1.09001 * 109.53370 * 179.14510 * 16 15 14 40 40 H 1.09000 * 110.67243 * 278.15190 * 20 19 17 41 41 H 1.08999 * 110.67210 * 41.28741 * 20 19 17 42 42 H 1.09003 * 110.72374 * 204.22755 * 21 20 19 43 43 H 1.08998 * 110.87805 * 81.01410 * 21 20 19 44 44 H 1.09002 * 110.30851 * 263.04352 * 22 21 20 45 45 H 1.09001 * 110.39525 * 140.91346 * 22 21 20 46 46 H 1.09006 * 109.90923 * 333.50830 * 23 19 17 47 47 H 1.08997 * 109.91826 * 94.60512 * 23 19 17 48 48 H 1.09001 * 109.45990 * 305.85570 * 27 14 2 49 49 H 1.08997 * 109.46419 * 65.82250 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6132 -1.3137 6 6 4.0672 -1.3242 -2.5438 7 1 3.3688 -1.8047 -3.2129 8 6 5.4186 -1.3612 -2.8150 9 7 6.2691 -0.7766 -1.9999 10 14 6.0413 -2.2419 -4.3401 11 1 6.0919 -1.2878 -5.4768 12 1 7.4023 -2.7767 -4.0818 13 1 5.1247 -3.3616 -4.6741 14 7 2.0196 -0.6924 1.1995 15 6 1.5335 -2.0773 1.2430 16 6 2.1777 -2.8087 2.4229 17 6 1.8223 -2.0822 3.7230 18 1 0.7425 -2.1045 3.8703 19 7 2.4857 -2.7457 4.8532 20 6 2.2153 -2.0278 6.1251 21 6 2.5093 -3.0985 7.2059 22 6 1.9787 -4.3981 6.5584 23 6 1.9631 -4.1160 5.0446 24 6 2.2965 -0.6291 3.6325 25 9 3.6884 -0.5998 3.4950 26 9 1.9275 0.0566 4.7948 27 6 1.6488 0.0391 2.4176 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.7517 -1.7715 -1.2055 32 1 1.6054 -0.2618 -2.1370 33 1 3.8531 0.4370 -1.3574 34 1 3.9995 -1.0726 -0.4260 35 1 7.2198 -0.8029 -2.1905 36 1 0.4501 -2.0783 1.3628 37 1 1.7965 -2.5839 0.3143 38 1 3.2604 -2.8201 2.2967 39 1 1.8055 -3.8323 2.4644 40 1 2.8855 -1.1754 6.2359 41 1 1.1742 -1.7087 6.1730 42 1 1.9680 -2.8768 8.1257 43 1 3.5796 -3.1725 7.3983 44 1 0.9709 -4.6135 6.9135 45 1 2.6439 -5.2324 6.7809 46 1 0.9432 -4.1807 4.6653 47 1 2.5988 -4.8320 4.5239 48 1 1.9955 1.0697 2.3421 49 1 0.5649 0.0282 2.5320 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172506623.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:37 Heat of formation + Delta-G solvation = -94.780440 kcal Electronic energy + Delta-G solvation = -28901.119675 eV Core-core repulsion = 24919.412193 eV Total energy + Delta-G solvation = -3981.707482 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.202 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.79534 -46.67802 -39.59780 -38.53321 -34.88113 -33.11369 -31.68586 -30.47476 -29.37186 -29.00521 -28.18913 -25.25019 -24.00363 -23.33632 -21.64225 -21.24676 -20.74859 -20.22031 -19.06380 -17.23330 -16.93427 -16.65607 -16.12186 -15.80214 -15.57963 -15.31246 -14.76274 -14.39615 -14.22575 -14.03380 -13.69489 -13.41745 -13.21634 -13.01784 -12.96688 -12.80641 -12.68063 -12.35209 -12.33826 -12.12779 -11.90806 -11.69825 -11.49491 -11.41525 -11.21929 -11.18120 -11.06096 -10.85328 -10.78214 -10.67747 -10.43114 -10.22226 -10.12454 -9.61002 -9.21678 -8.89230 -8.62711 -8.23358 -7.96606 -5.86517 -3.88769 3.37954 3.44487 3.46956 3.49649 3.72038 3.93353 4.18293 4.38330 4.47218 4.54809 4.62800 4.68296 4.81070 5.01208 5.08476 5.18712 5.21734 5.27321 5.32646 5.44828 5.45826 5.48583 5.50486 5.54438 5.58222 5.61750 5.63355 5.67019 5.76726 5.81585 5.91698 5.96246 5.97829 6.16834 6.17440 6.25342 6.41336 6.58670 6.65443 6.78259 6.81331 7.19369 7.31827 7.37366 7.85404 8.06301 8.23066 8.56681 9.20213 9.74044 11.24164 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.016126 B = 0.003637 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.957771 B = 7696.247005 C = 8370.916079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.084 3.916 3 H 0.082 0.918 4 C -0.103 4.103 5 C 0.028 3.972 6 C -0.522 4.522 7 H 0.050 0.950 8 C 0.058 3.942 9 N -0.891 5.891 10 Si 0.886 3.114 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.275 1.275 14 N -0.508 5.508 15 C 0.047 3.953 16 C -0.108 4.108 17 C 0.043 3.957 18 H 0.061 0.939 19 N -0.506 5.506 20 C 0.030 3.970 21 C -0.124 4.124 22 C -0.131 4.131 23 C 0.037 3.963 24 C 0.303 3.697 25 F -0.172 7.172 26 F -0.205 7.205 27 C 0.018 3.982 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.010 0.990 34 H 0.033 0.967 35 H 0.259 0.741 36 H 0.032 0.968 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.046 0.954 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.073 0.927 46 H 0.044 0.956 47 H 0.084 0.916 48 H 0.098 0.902 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.778 -3.479 16.806 22.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.024 4.024 3 H 0.100 0.900 4 C -0.141 4.141 5 C -0.009 4.009 6 C -0.560 4.560 7 H 0.068 0.932 8 C -0.143 4.143 9 N -0.530 5.530 10 Si 0.714 3.286 11 H -0.209 1.209 12 H -0.213 1.213 13 H -0.201 1.201 14 N -0.232 5.232 15 C -0.081 4.081 16 C -0.146 4.146 17 C -0.067 4.067 18 H 0.079 0.921 19 N -0.230 5.230 20 C -0.097 4.097 21 C -0.162 4.162 22 C -0.169 4.169 23 C -0.090 4.090 24 C 0.266 3.734 25 F -0.152 7.152 26 F -0.187 7.187 27 C -0.111 4.111 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.028 0.972 34 H 0.052 0.948 35 H 0.068 0.932 36 H 0.050 0.950 37 H 0.119 0.881 38 H 0.115 0.885 39 H 0.094 0.906 40 H 0.108 0.892 41 H 0.065 0.935 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.083 0.917 45 H 0.091 0.909 46 H 0.062 0.938 47 H 0.102 0.898 48 H 0.116 0.884 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.488 -3.457 16.705 21.141 hybrid contribution -1.281 -0.267 -0.528 1.411 sum -13.768 -3.724 16.177 21.567 Atomic orbital electron populations 1.22533 0.98649 1.01785 1.01606 1.21917 0.91150 0.98897 0.90420 0.89978 1.21776 1.01093 0.98277 0.92939 1.19014 0.87798 0.96877 0.97168 1.21300 0.91841 1.34359 1.08503 0.93163 1.24993 0.97160 0.95745 0.96401 1.69979 1.02212 1.44108 1.36692 0.86704 0.78186 0.79973 0.83737 1.20877 1.21317 1.20053 1.61967 1.59469 1.01467 1.00288 1.22284 0.96170 0.89590 1.00046 1.21653 1.04452 0.98087 0.90456 1.22827 0.96946 0.92416 0.94525 0.92074 1.64825 1.53675 1.02126 1.02413 1.23492 1.00095 0.97494 0.88652 1.22505 1.01961 0.94242 0.97535 1.22396 1.01270 0.98556 0.94650 1.22882 0.98619 0.91055 0.96457 1.20911 0.78365 0.91376 0.82729 1.93078 1.29423 1.97038 1.95697 1.92953 1.91610 1.82133 1.51961 1.22928 0.98568 0.99725 0.89919 0.91876 0.92536 0.93470 0.93123 0.92989 0.97185 0.94836 0.93175 0.94995 0.88080 0.88510 0.90569 0.89190 0.93543 0.91158 0.90588 0.91661 0.90865 0.93764 0.89807 0.88367 0.92498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.38 8.50 37.16 0.32 -2.06 16 2 C 0.08 1.35 2.35 -67.71 -0.16 1.19 16 3 H 0.08 1.38 8.08 -51.93 -0.42 0.96 16 4 C -0.10 -2.03 4.44 -26.73 -0.12 -2.15 16 5 C 0.03 0.73 4.86 -27.88 -0.14 0.60 16 6 C -0.52 -14.82 9.11 -34.44 -0.31 -15.14 16 7 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 9 N -0.89 -27.37 13.29 55.43 0.74 -26.64 16 10 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 N -0.51 -8.13 4.03 -226.69 -0.91 -9.04 16 15 C 0.05 0.67 4.64 -3.83 -0.02 0.65 16 16 C -0.11 -1.46 5.19 -26.65 -0.14 -1.60 16 17 C 0.04 0.55 1.44 -67.59 -0.10 0.45 16 18 H 0.06 0.71 7.96 -51.93 -0.41 0.30 16 19 N -0.51 -6.32 5.00 -222.35 -1.11 -7.43 16 20 C 0.03 0.34 4.79 -1.89 -0.01 0.33 16 21 C -0.12 -1.12 7.06 -24.87 -0.18 -1.30 16 22 C -0.13 -1.09 6.93 -25.38 -0.18 -1.26 16 23 C 0.04 0.38 5.61 -2.75 -0.02 0.36 16 24 C 0.30 4.41 1.63 -26.65 -0.04 4.37 16 25 F -0.17 -3.14 16.48 2.25 0.04 -3.10 16 26 F -0.21 -2.86 13.80 2.25 0.03 -2.83 16 27 C 0.02 0.26 4.52 -3.84 -0.02 0.24 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.69 6.52 -51.93 -0.34 0.35 16 30 H 0.05 0.54 6.65 -51.93 -0.35 0.19 16 31 H 0.05 0.97 6.05 -51.93 -0.31 0.66 16 32 H 0.05 1.01 8.14 -51.92 -0.42 0.58 16 33 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.03 0.93 7.75 -51.93 -0.40 0.53 16 35 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 36 H 0.03 0.39 6.62 -51.93 -0.34 0.05 16 37 H 0.10 1.60 5.93 -51.93 -0.31 1.29 16 38 H 0.10 1.60 7.91 -51.93 -0.41 1.19 16 39 H 0.08 0.87 7.45 -51.93 -0.39 0.48 16 40 H 0.09 1.14 6.96 -51.93 -0.36 0.78 16 41 H 0.05 0.51 7.69 -51.93 -0.40 0.11 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.04 0.41 7.65 -51.93 -0.40 0.01 16 47 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 48 H 0.10 1.37 8.08 -51.93 -0.42 0.95 16 49 H 0.06 0.68 6.73 -51.93 -0.35 0.33 16 LS Contribution 369.20 15.07 5.56 5.56 Total: -1.00 -31.18 369.20 -10.41 -41.59 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -8.53 Total: -1.32 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -1.20 Total: -13.73 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: -1.29 Total: -43.11 kcal Atomic # 9 Polarization: -6.00 SS G_CDS: 0.07 Total: -5.93 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.18 -10.41 -41.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172506623.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.189 kcal (2) G-P(sol) polarization free energy of solvation -31.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds