Wall clock time and date at job start Tue Mar 31 2020 11:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46590 * 2 1 4 4 C 1.53000 * 109.47223 * 239.99769 * 2 1 3 5 5 C 1.53004 * 109.47017 * 174.99518 * 4 2 1 6 6 C 1.50699 * 109.46826 * 179.97438 * 5 4 2 7 7 H 1.08000 * 120.00380 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99705 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00001 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00021 * 180.02562 * 8 6 5 11 11 H 1.48492 * 109.47393 * 89.99736 * 10 8 6 12 12 H 1.48495 * 109.47337 * 210.00189 * 10 8 6 13 13 H 1.48510 * 109.46932 * 330.00019 * 10 8 6 14 14 N 1.46902 * 109.47069 * 119.99339 * 2 1 3 15 15 C 1.46846 * 110.99617 * 59.21445 * 14 2 1 16 16 C 1.53040 * 109.51964 * 174.15808 * 15 14 2 17 17 C 1.53119 * 109.28089 * 59.17912 * 16 15 14 18 18 H 1.09003 * 109.56984 * 62.28008 * 17 16 15 19 19 N 1.46890 * 109.52218 * 182.43945 * 17 16 15 20 20 C 1.48533 * 110.99764 * 177.28627 * 19 17 16 21 21 C 1.54943 * 103.22846 * 159.72125 * 20 19 17 22 22 C 1.54591 * 102.92035 * 322.58732 * 21 20 19 23 23 C 1.47906 * 111.00453 * 294.68320 * 19 17 16 24 24 C 1.53124 * 109.15841 * 302.34776 * 17 16 15 25 25 F 1.39904 * 109.49814 * 297.70973 * 24 17 16 26 26 F 1.39896 * 109.53404 * 177.61777 * 24 17 16 27 27 C 1.46846 * 111.00204 * 295.00340 * 14 2 1 28 28 H 1.09000 * 109.47556 * 60.00275 * 1 2 3 29 29 H 1.09001 * 109.46798 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47521 * 300.00203 * 1 2 3 31 31 H 1.08993 * 109.47254 * 294.99674 * 4 2 1 32 32 H 1.09007 * 109.46959 * 55.00119 * 4 2 1 33 33 H 1.08993 * 109.47236 * 300.00166 * 5 4 2 34 34 H 1.08994 * 109.46835 * 60.00147 * 5 4 2 35 35 H 0.96996 * 120.00242 * 179.97438 * 9 8 6 36 36 H 1.08996 * 109.46231 * 294.17554 * 15 14 2 37 37 H 1.09004 * 109.46418 * 54.14394 * 15 14 2 38 38 H 1.09004 * 109.50602 * 299.23671 * 16 15 14 39 39 H 1.09001 * 109.53370 * 179.14510 * 16 15 14 40 40 H 1.09000 * 110.67243 * 278.15190 * 20 19 17 41 41 H 1.08999 * 110.67210 * 41.28741 * 20 19 17 42 42 H 1.09003 * 110.72374 * 204.22755 * 21 20 19 43 43 H 1.08998 * 110.87805 * 81.01410 * 21 20 19 44 44 H 1.09002 * 110.30851 * 263.04352 * 22 21 20 45 45 H 1.09001 * 110.39525 * 140.91346 * 22 21 20 46 46 H 1.09006 * 109.90923 * 333.50830 * 23 19 17 47 47 H 1.08997 * 109.91826 * 94.60512 * 23 19 17 48 48 H 1.09001 * 109.45990 * 305.85570 * 27 14 2 49 49 H 1.08997 * 109.46419 * 65.82250 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6132 -1.3137 6 6 4.0672 -1.3242 -2.5438 7 1 3.3688 -1.8047 -3.2129 8 6 5.4186 -1.3612 -2.8150 9 7 6.2691 -0.7766 -1.9999 10 14 6.0413 -2.2419 -4.3401 11 1 6.0919 -1.2878 -5.4768 12 1 7.4023 -2.7767 -4.0818 13 1 5.1247 -3.3616 -4.6741 14 7 2.0196 -0.6924 1.1995 15 6 1.5335 -2.0773 1.2430 16 6 2.1777 -2.8087 2.4229 17 6 1.8223 -2.0822 3.7230 18 1 0.7425 -2.1045 3.8703 19 7 2.4857 -2.7457 4.8532 20 6 2.2153 -2.0278 6.1251 21 6 2.5093 -3.0985 7.2059 22 6 1.9787 -4.3981 6.5584 23 6 1.9631 -4.1160 5.0446 24 6 2.2965 -0.6291 3.6325 25 9 3.6884 -0.5998 3.4950 26 9 1.9275 0.0566 4.7948 27 6 1.6488 0.0391 2.4176 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.7517 -1.7715 -1.2055 32 1 1.6054 -0.2618 -2.1370 33 1 3.8531 0.4370 -1.3574 34 1 3.9995 -1.0726 -0.4260 35 1 7.2198 -0.8029 -2.1905 36 1 0.4501 -2.0783 1.3628 37 1 1.7965 -2.5839 0.3143 38 1 3.2604 -2.8201 2.2967 39 1 1.8055 -3.8323 2.4644 40 1 2.8855 -1.1754 6.2359 41 1 1.1742 -1.7087 6.1730 42 1 1.9680 -2.8768 8.1257 43 1 3.5796 -3.1725 7.3983 44 1 0.9709 -4.6135 6.9135 45 1 2.6439 -5.2324 6.7809 46 1 0.9432 -4.1807 4.6653 47 1 2.5988 -4.8320 4.5239 48 1 1.9955 1.0697 2.3421 49 1 0.5649 0.0282 2.5320 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172506623.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:37 Heat of formation + Delta-G solvation = -114.342249 kcal Electronic energy + Delta-G solvation = -28901.967939 eV Core-core repulsion = 24919.412193 eV Total energy + Delta-G solvation = -3982.555745 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.202 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.98136 -47.92739 -40.65277 -39.54788 -36.21355 -34.93876 -33.10964 -31.55159 -30.94706 -29.81119 -29.24244 -27.05146 -25.19519 -24.44325 -23.18532 -22.32947 -21.70856 -21.34353 -20.33789 -18.49613 -18.21223 -18.03121 -17.66982 -17.02520 -16.53428 -16.50170 -16.37548 -15.82716 -15.27736 -14.99176 -14.81398 -14.55744 -14.46816 -14.39684 -14.22512 -14.13553 -13.85799 -13.64022 -13.42155 -13.32279 -13.20770 -13.15229 -12.81477 -12.71335 -12.54184 -12.34553 -12.25119 -12.17529 -11.98361 -11.83653 -11.77132 -11.45073 -11.40385 -11.20168 -11.15963 -10.90502 -10.47038 -9.49765 -9.13400 -8.11212 -6.22252 1.40775 1.42420 1.53075 2.44518 2.44947 2.72998 2.85286 3.07890 3.21321 3.36991 3.60979 3.70412 3.86823 3.93670 4.04287 4.08817 4.10660 4.17007 4.30994 4.33234 4.41704 4.43403 4.48231 4.55793 4.60399 4.67281 4.71986 4.76365 4.85984 4.89597 4.95957 4.97943 5.03937 5.08231 5.11802 5.15663 5.25049 5.28918 5.33059 5.46407 5.61300 5.84510 5.88553 5.89951 6.04522 6.12664 6.18469 6.35446 6.98803 7.46257 8.99951 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.016126 B = 0.003637 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.957771 B = 7696.247005 C = 8370.916079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.089 3.911 3 H 0.067 0.933 4 C -0.091 4.091 5 C 0.038 3.962 6 C -0.540 4.540 7 H 0.058 0.942 8 C -0.002 4.002 9 N -0.933 5.933 10 Si 0.960 3.040 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.261 1.261 14 N -0.540 5.540 15 C 0.050 3.950 16 C -0.101 4.101 17 C 0.052 3.948 18 H 0.086 0.914 19 N -0.532 5.532 20 C 0.030 3.970 21 C -0.121 4.121 22 C -0.125 4.125 23 C 0.035 3.965 24 C 0.295 3.705 25 F -0.202 7.202 26 F -0.202 7.202 27 C 0.023 3.977 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.056 0.944 33 H -0.025 1.025 34 H 0.001 0.999 35 H 0.260 0.740 36 H 0.064 0.936 37 H 0.080 0.920 38 H 0.055 0.945 39 H 0.100 0.900 40 H 0.067 0.933 41 H 0.054 0.946 42 H 0.089 0.911 43 H 0.066 0.934 44 H 0.083 0.917 45 H 0.079 0.921 46 H 0.058 0.942 47 H 0.077 0.923 48 H 0.090 0.910 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.538 -4.846 17.002 24.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.018 4.018 3 H 0.085 0.915 4 C -0.129 4.129 5 C 0.001 3.999 6 C -0.578 4.578 7 H 0.077 0.923 8 C -0.199 4.199 9 N -0.574 5.574 10 Si 0.785 3.215 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.185 1.185 14 N -0.265 5.265 15 C -0.077 4.077 16 C -0.139 4.139 17 C -0.058 4.058 18 H 0.103 0.897 19 N -0.257 5.257 20 C -0.097 4.097 21 C -0.159 4.159 22 C -0.163 4.163 23 C -0.092 4.092 24 C 0.258 3.742 25 F -0.183 7.183 26 F -0.183 7.183 27 C -0.106 4.106 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.075 0.925 33 H -0.007 1.007 34 H 0.019 0.981 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.073 0.927 39 H 0.118 0.882 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.108 0.892 43 H 0.085 0.915 44 H 0.102 0.898 45 H 0.098 0.902 46 H 0.076 0.924 47 H 0.096 0.904 48 H 0.109 0.891 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.269 -4.828 16.901 23.284 hybrid contribution -0.365 0.192 -0.552 0.689 sum -15.634 -4.636 16.349 23.092 Atomic orbital electron populations 1.22390 0.95056 1.02893 1.02993 1.21700 0.93837 0.97371 0.88930 0.91468 1.21569 0.96491 0.99482 0.95344 1.18817 0.92180 0.93883 0.94986 1.21794 0.92398 1.34279 1.09327 0.92350 1.25963 0.97536 0.96561 0.99878 1.70142 1.02526 1.45741 1.38963 0.85533 0.77557 0.79033 0.79418 1.19930 1.21142 1.18549 1.61817 1.61131 1.02583 1.00946 1.22248 0.97896 0.88343 0.99224 1.21560 1.01819 0.99575 0.90969 1.22730 0.98015 0.90788 0.94252 0.89677 1.64772 1.54704 1.03442 1.02743 1.23447 0.99863 0.97446 0.88960 1.22500 1.01796 0.93947 0.97673 1.22394 1.02482 0.98181 0.93229 1.22954 0.99062 0.89421 0.97811 1.21268 0.76879 0.92984 0.83112 1.93014 1.32122 1.97256 1.95896 1.92953 1.91375 1.82228 1.51764 1.22908 1.00160 0.98893 0.88666 0.91166 0.91467 0.91455 0.92343 0.92532 1.00656 0.98101 0.93165 0.91818 0.90186 0.92662 0.88196 0.91467 0.92804 0.89222 0.91515 0.89812 0.90230 0.92394 0.90416 0.89141 0.89365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.91 8.50 71.98 0.61 -3.30 16 2 C 0.09 2.84 2.35 44.91 0.11 2.94 16 3 H 0.07 2.31 8.08 -2.38 -0.02 2.29 16 4 C -0.09 -3.61 4.44 30.60 0.14 -3.48 16 5 C 0.04 2.07 4.86 29.85 0.15 2.22 16 6 C -0.54 -31.33 9.11 25.60 0.23 -31.09 16 7 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 8 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 9 N -0.93 -59.39 13.29 21.45 0.28 -59.10 16 10 Si 0.96 45.49 29.54 68.60 2.03 47.52 16 11 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 12 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 13 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 14 N -0.54 -17.26 4.03 -871.12 -3.51 -20.77 16 15 C 0.05 1.38 4.64 86.33 0.40 1.78 16 16 C -0.10 -2.68 5.19 30.65 0.16 -2.52 16 17 C 0.05 1.26 1.44 45.00 0.06 1.33 16 18 H 0.09 1.68 7.96 -2.39 -0.02 1.66 16 19 N -0.53 -12.86 5.00 -857.38 -4.29 -17.14 16 20 C 0.03 0.65 4.79 86.65 0.41 1.06 16 21 C -0.12 -1.99 7.06 31.80 0.22 -1.76 16 22 C -0.12 -1.77 6.93 31.47 0.22 -1.56 16 23 C 0.03 0.63 5.61 86.45 0.49 1.11 16 24 C 0.29 8.54 1.63 30.65 0.05 8.59 16 25 F -0.20 -7.79 16.48 44.97 0.74 -7.05 16 26 F -0.20 -5.53 13.80 44.97 0.62 -4.91 16 27 C 0.02 0.62 4.52 86.32 0.39 1.01 16 28 H 0.07 1.49 8.14 -2.39 -0.02 1.48 16 29 H 0.07 1.38 6.52 -2.39 -0.02 1.36 16 30 H 0.07 1.26 6.65 -2.38 -0.02 1.25 16 31 H 0.06 2.22 6.05 -2.39 -0.01 2.20 16 32 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 33 H -0.02 -1.50 8.14 -2.39 -0.02 -1.52 16 34 H 0.00 0.03 7.75 -2.39 -0.02 0.01 16 35 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 36 H 0.06 1.34 6.62 -2.39 -0.02 1.32 16 37 H 0.08 2.51 5.93 -2.38 -0.01 2.49 16 38 H 0.05 1.93 7.91 -2.39 -0.02 1.91 16 39 H 0.10 2.12 7.45 -2.39 -0.02 2.10 16 40 H 0.07 1.73 6.96 -2.39 -0.02 1.71 16 41 H 0.05 1.06 7.69 -2.39 -0.02 1.05 16 42 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.06 0.89 7.65 -2.38 -0.02 0.87 16 47 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 48 H 0.09 2.54 8.08 -2.39 -0.02 2.52 16 49 H 0.09 1.82 6.73 -2.39 -0.02 1.80 16 Total: -1.00 -70.82 369.20 0.89 -69.93 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.91 Total: 14.85 kcal Atomic # 6 Polarization: -27.43 SS G_CDS: 4.10 Total: -23.33 kcal Atomic # 7 Polarization: -89.50 SS G_CDS: -7.51 Total: -97.02 kcal Atomic # 9 Polarization: -13.32 SS G_CDS: 1.36 Total: -11.96 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -70.82 0.89 -69.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172506623.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.414 kcal (2) G-P(sol) polarization free energy of solvation -70.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds