Wall clock time and date at job start Tue Mar 31 2020 12:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46903 * 109.47386 * 2 1 4 4 C 1.46899 * 111.00071 * 296.09411 * 3 2 1 5 5 C 1.53001 * 109.47351 * 296.03995 * 4 3 2 6 6 C 1.46904 * 110.99946 * 60.04804 * 3 2 1 7 7 C 1.52993 * 109.47427 * 180.02562 * 6 3 2 8 8 C 1.52996 * 109.47528 * 179.97438 * 7 6 3 9 9 C 1.53007 * 109.46868 * 59.99670 * 8 7 6 10 10 N 1.46494 * 109.47070 * 60.00283 * 9 8 7 11 11 C 1.38234 * 120.00182 * 85.76694 * 10 9 8 12 12 C 1.38990 * 119.99627 * 5.28112 * 11 10 9 13 13 H 1.07999 * 120.00263 * 311.09509 * 12 11 10 14 14 C 1.40820 * 119.99629 * 131.09561 * 12 11 10 15 15 N 1.30345 * 119.99758 * 156.21053 * 14 12 11 16 16 Si 1.86799 * 120.00306 * 336.20596 * 14 12 11 17 17 H 1.48506 * 109.46845 * 84.96029 * 16 14 12 18 18 H 1.48503 * 109.47436 * 204.96057 * 16 14 12 19 19 H 1.48497 * 109.47223 * 324.96629 * 16 14 12 20 20 C 1.41152 * 120.00055 * 185.27998 * 11 10 9 21 21 C 1.43199 * 119.99734 * 172.99710 * 20 11 10 22 22 N 9.89348 * 123.41247 * 34.53479 * 2 1 3 23 23 C 1.43196 * 119.99931 * 352.99476 * 20 11 10 24 24 N 6.79150 * 142.86397 * 50.12498 * 2 1 3 25 25 C 1.52999 * 109.46968 * 300.00122 * 9 8 7 26 26 C 1.52992 * 109.47124 * 60.00367 * 25 9 8 27 27 H 1.08992 * 109.47421 * 181.72247 * 1 2 3 28 28 H 1.08999 * 109.46867 * 301.72576 * 1 2 3 29 29 H 1.09009 * 109.47161 * 61.71947 * 1 2 3 30 30 H 1.09003 * 109.47561 * 240.00416 * 2 1 3 31 31 H 1.08995 * 109.47524 * 120.00329 * 2 1 3 32 32 H 1.09003 * 109.46965 * 56.04385 * 4 3 2 33 33 H 1.08996 * 109.47010 * 176.03909 * 4 3 2 34 34 H 1.09000 * 109.46767 * 302.42797 * 5 4 3 35 35 H 1.08999 * 109.46706 * 62.42271 * 5 4 3 36 36 H 1.08991 * 109.47199 * 182.42731 * 5 4 3 37 37 H 1.09004 * 109.46800 * 300.00272 * 6 3 2 38 38 H 1.09004 * 109.47095 * 299.99776 * 7 6 3 39 39 H 1.08999 * 109.47626 * 59.99382 * 7 6 3 40 40 H 1.09001 * 109.47654 * 179.97438 * 8 7 6 41 41 H 1.08999 * 109.47219 * 299.99772 * 8 7 6 42 42 H 1.09002 * 109.46748 * 180.02562 * 9 8 7 43 43 H 0.97000 * 120.00483 * 265.76828 * 10 9 8 44 44 H 0.97003 * 119.99820 * 179.97438 * 15 14 12 45 45 H 1.08999 * 109.47134 * 299.99908 * 25 9 8 46 46 H 1.09005 * 109.46796 * 179.97438 * 25 9 8 47 47 H 1.09001 * 109.47352 * 179.97438 * 26 25 9 48 48 H 1.08999 * 109.47490 * 59.99759 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6265 2.0824 -1.2316 5 6 2.2961 1.4125 -2.4331 6 6 1.5496 2.1096 1.1883 7 6 2.0781 3.5449 1.1527 8 6 1.5881 4.2998 2.3900 9 6 2.0992 3.5991 3.6505 10 7 3.5640 3.5799 3.6386 11 6 4.2734 4.6599 4.1297 12 6 3.6015 5.7156 4.7345 13 1 2.7475 6.1623 4.2472 14 6 4.0343 6.2028 5.9829 15 7 3.7497 7.4235 6.3404 16 14 5.0163 5.0995 7.1266 17 1 6.4544 5.1636 6.7620 18 1 4.8400 5.5575 8.5282 19 1 4.5351 3.7005 6.9987 20 6 5.6801 4.6905 4.0170 21 6 6.4025 5.8700 4.3876 22 7 6.9779 6.8031 4.6817 23 6 6.3846 3.5420 3.5321 24 7 6.9442 2.6286 3.1466 25 6 1.5706 2.1638 3.6861 26 6 2.0607 1.4090 2.4488 27 1 -0.3634 -1.0271 0.0309 28 1 -0.3633 0.5404 0.8741 29 1 -0.3634 0.4869 -0.9051 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 0.5435 2.0351 -1.3460 33 1 1.9406 3.1246 -1.1750 34 1 3.3777 1.4216 -2.2980 35 1 1.9489 0.3825 -2.5150 36 1 2.0390 1.9560 -3.3422 37 1 0.4597 2.1242 1.1974 38 1 3.1680 3.5306 1.1434 39 1 1.7137 4.0442 0.2549 40 1 1.9650 5.3222 2.3648 41 1 0.4982 4.3141 2.3988 42 1 1.7497 4.1367 4.5320 43 1 4.0361 2.8094 3.2860 44 1 4.0475 7.7589 7.2004 45 1 0.4807 2.1781 3.6949 46 1 1.9351 1.6645 4.5839 47 1 1.6845 0.3863 2.4744 48 1 3.1505 1.3947 2.4400 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173104475.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:35 Heat of formation + Delta-G solvation = 52.657442 kcal Electronic energy + Delta-G solvation = -27427.084436 eV Core-core repulsion = 23902.459527 eV Total energy + Delta-G solvation = -3524.624909 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.97121 -37.92157 -36.19428 -34.77285 -34.35513 -33.17766 -31.87617 -30.99673 -30.29968 -28.89233 -27.09344 -26.69910 -24.35718 -22.49013 -21.96515 -21.23080 -19.92261 -19.12623 -18.28033 -17.35899 -16.72619 -16.30320 -15.71241 -15.29278 -14.78387 -14.68060 -14.38068 -13.83782 -13.49427 -13.28967 -13.22167 -13.01960 -12.91990 -12.65163 -12.41647 -12.31669 -12.22021 -12.10187 -11.93480 -11.76659 -11.73593 -11.61927 -11.53682 -11.32782 -11.22404 -10.99103 -10.94070 -10.81317 -10.70057 -10.57586 -10.43552 -10.33246 -10.04880 -9.88176 -9.48367 -9.05921 -8.27970 -7.26053 -6.66790 -5.20375 2.55009 3.08561 3.16493 3.22135 3.79066 3.82534 3.89437 4.02453 4.10605 4.39217 4.56744 4.69786 4.77106 4.86374 5.03261 5.09801 5.14149 5.17131 5.22477 5.26755 5.31506 5.37772 5.45753 5.46762 5.55367 5.59848 5.62869 5.67454 5.76503 5.80702 5.85380 5.92044 5.94187 6.02447 6.13476 6.15688 6.29755 6.32005 6.35865 6.43266 6.54204 6.55033 6.71585 7.08249 7.12926 7.18188 7.38541 7.90472 8.07581 8.44766 8.57618 8.92736 9.26954 9.72006 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.017698 B = 0.003998 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.687346 B = 7002.543544 C = 7470.853569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.044 3.956 3 N -0.531 5.531 4 C 0.042 3.958 5 C -0.149 4.149 6 C 0.086 3.914 7 C -0.113 4.113 8 C -0.131 4.131 9 C 0.152 3.848 10 N -0.722 5.722 11 C 0.414 3.586 12 C -0.471 4.471 13 H 0.112 0.888 14 C 0.113 3.887 15 N -0.758 5.758 16 Si 0.890 3.110 17 H -0.244 1.244 18 H -0.281 1.281 19 H -0.249 1.249 20 C -0.317 4.317 21 C 0.325 3.675 22 N -0.519 5.519 23 C 0.302 3.698 24 N -0.531 5.531 25 C -0.126 4.126 26 C -0.114 4.114 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.032 0.968 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.051 0.949 36 H 0.055 0.945 37 H 0.042 0.958 38 H 0.076 0.924 39 H 0.058 0.942 40 H 0.076 0.924 41 H 0.061 0.939 42 H 0.097 0.903 43 H 0.388 0.612 44 H 0.294 0.706 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.061 0.939 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.289 -10.982 -8.210 19.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.084 4.084 3 N -0.255 5.255 4 C -0.085 4.085 5 C -0.206 4.206 6 C -0.022 4.022 7 C -0.151 4.151 8 C -0.171 4.171 9 C 0.046 3.954 10 N -0.348 5.348 11 C 0.299 3.701 12 C -0.503 4.503 13 H 0.130 0.870 14 C -0.116 4.116 15 N -0.379 5.379 16 Si 0.712 3.288 17 H -0.168 1.168 18 H -0.207 1.207 19 H -0.172 1.172 20 C -0.337 4.337 21 C 0.016 3.984 22 N -0.201 5.201 23 C -0.005 4.005 24 N -0.213 5.213 25 C -0.164 4.164 26 C -0.152 4.152 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.050 0.950 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.080 0.920 42 H 0.115 0.885 43 H 0.224 0.776 44 H 0.106 0.894 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.079 0.921 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.259 -10.712 -8.192 17.568 hybrid contribution -0.842 -0.518 0.311 1.036 sum -12.101 -11.231 -7.882 18.294 Atomic orbital electron populations 1.22419 0.98627 1.02066 1.02045 1.22220 0.92594 0.90794 1.02796 1.62271 1.59499 1.01868 1.01828 1.22178 0.97493 0.99130 0.89744 1.21802 1.01878 1.00233 0.96733 1.21671 0.96904 0.94023 0.89612 1.21630 1.02467 0.93297 0.97703 1.22001 0.99937 1.00455 0.94678 1.20814 0.80900 0.95092 0.98592 1.45360 1.04992 1.17358 1.67084 1.17173 0.86843 0.85169 0.80963 1.18864 1.15139 1.12062 1.04250 0.87022 1.26026 0.92652 0.94200 0.98691 1.69445 1.33079 1.13912 1.21437 0.86541 0.82925 0.81457 0.77870 1.16778 1.20712 1.17240 1.12767 0.88797 0.89385 1.42788 1.24351 0.91895 0.91574 0.90554 1.80981 1.09907 1.11790 1.17420 1.25473 0.92468 0.92003 0.90522 1.81190 1.08342 1.12641 1.19177 1.21820 1.00791 0.95757 0.98064 1.21608 1.01863 0.98451 0.93268 0.92391 0.92212 0.92661 0.90757 0.90459 0.94955 0.90146 0.91729 0.92985 0.92601 0.93993 0.90517 0.92379 0.90520 0.92008 0.88498 0.77621 0.89435 0.91068 0.91053 0.92062 0.91064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.59 9.24 37.15 0.34 -1.24 16 2 C 0.04 0.41 5.47 -3.83 -0.02 0.39 16 3 N -0.53 -5.79 4.60 -226.65 -1.04 -6.83 16 4 C 0.04 0.42 5.18 -3.82 -0.02 0.40 16 5 C -0.15 -1.34 9.73 37.16 0.36 -0.98 16 6 C 0.09 0.94 1.55 -67.71 -0.11 0.84 16 7 C -0.11 -1.40 4.71 -26.74 -0.13 -1.53 16 8 C -0.13 -1.67 5.59 -26.73 -0.15 -1.82 16 9 C 0.15 2.08 2.58 -67.93 -0.18 1.90 16 10 N -0.72 -12.09 4.28 -51.92 -0.22 -12.32 16 11 C 0.41 8.42 5.37 -83.59 -0.45 7.97 16 12 C -0.47 -10.18 7.37 -38.33 -0.28 -10.47 16 13 H 0.11 2.43 7.08 -52.49 -0.37 2.06 16 14 C 0.11 2.58 4.46 -17.21 -0.08 2.51 16 15 N -0.76 -18.00 13.90 55.59 0.77 -17.23 16 16 Si 0.89 19.16 25.57 -169.99 -4.35 14.82 16 17 H -0.24 -5.72 6.16 56.52 0.35 -5.37 16 18 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 19 H -0.25 -5.13 7.11 56.52 0.40 -4.73 16 20 C -0.32 -7.13 4.55 -104.94 -0.48 -7.60 16 21 C 0.33 8.07 10.72 -22.51 -0.24 7.83 16 22 N -0.52 -13.55 18.53 41.80 0.77 -12.77 16 23 C 0.30 6.77 14.11 -22.40 -0.32 6.46 16 24 N -0.53 -12.15 18.55 41.93 0.78 -11.38 16 25 C -0.13 -1.41 5.61 -26.74 -0.15 -1.56 16 26 C -0.11 -1.28 4.80 -26.73 -0.13 -1.41 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.52 6.31 -51.93 -0.33 0.19 16 29 H 0.05 0.46 6.49 -51.92 -0.34 0.12 16 30 H 0.07 0.67 6.27 -51.93 -0.33 0.34 16 31 H 0.08 0.74 6.30 -51.93 -0.33 0.41 16 32 H 0.03 0.31 6.26 -51.93 -0.32 -0.02 16 33 H 0.08 0.85 5.80 -51.93 -0.30 0.55 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.44 6.53 -51.93 -0.34 0.10 16 36 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.04 0.45 6.27 -51.93 -0.33 0.12 16 38 H 0.08 1.14 7.61 -51.93 -0.39 0.75 16 39 H 0.06 0.68 6.18 -51.93 -0.32 0.36 16 40 H 0.08 1.12 7.41 -51.93 -0.39 0.74 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.10 1.43 7.00 -51.93 -0.36 1.07 16 43 H 0.39 6.52 5.71 -40.82 -0.23 6.29 16 44 H 0.29 6.55 8.29 -40.82 -0.34 6.21 16 45 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 47 H 0.06 0.62 6.41 -51.93 -0.33 0.29 16 48 H 0.07 0.95 6.50 -51.93 -0.34 0.61 16 LS Contribution 368.12 15.07 5.55 5.55 Total: -1.00 -25.86 368.12 -6.82 -32.68 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -7.07 Total: 5.80 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -2.01 Total: 1.68 kcal Atomic # 7 Polarization: -61.59 SS G_CDS: 1.06 Total: -60.52 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -4.35 Total: 14.82 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -25.86 -6.82 -32.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173104475.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.336 kcal (2) G-P(sol) polarization free energy of solvation -25.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds