Wall clock time and date at job start Tue Mar 31 2020 12:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46903 * 109.47386 * 2 1 4 4 C 1.46899 * 111.00071 * 296.09411 * 3 2 1 5 5 C 1.53001 * 109.47351 * 296.03995 * 4 3 2 6 6 C 1.46904 * 110.99946 * 60.04804 * 3 2 1 7 7 C 1.52993 * 109.47427 * 180.02562 * 6 3 2 8 8 C 1.52996 * 109.47528 * 179.97438 * 7 6 3 9 9 C 1.53007 * 109.46868 * 59.99670 * 8 7 6 10 10 N 1.46494 * 109.47070 * 60.00283 * 9 8 7 11 11 C 1.38234 * 120.00182 * 85.76694 * 10 9 8 12 12 C 1.38990 * 119.99627 * 5.28112 * 11 10 9 13 13 H 1.07999 * 120.00263 * 311.09509 * 12 11 10 14 14 C 1.40820 * 119.99629 * 131.09561 * 12 11 10 15 15 N 1.30345 * 119.99758 * 156.21053 * 14 12 11 16 16 Si 1.86799 * 120.00306 * 336.20596 * 14 12 11 17 17 H 1.48506 * 109.46845 * 84.96029 * 16 14 12 18 18 H 1.48503 * 109.47436 * 204.96057 * 16 14 12 19 19 H 1.48497 * 109.47223 * 324.96629 * 16 14 12 20 20 C 1.41152 * 120.00055 * 185.27998 * 11 10 9 21 21 C 1.43199 * 119.99734 * 172.99710 * 20 11 10 22 22 N 9.89348 * 123.41247 * 34.53479 * 2 1 3 23 23 C 1.43196 * 119.99931 * 352.99476 * 20 11 10 24 24 N 6.79150 * 142.86397 * 50.12498 * 2 1 3 25 25 C 1.52999 * 109.46968 * 300.00122 * 9 8 7 26 26 C 1.52992 * 109.47124 * 60.00367 * 25 9 8 27 27 H 1.08992 * 109.47421 * 181.72247 * 1 2 3 28 28 H 1.08999 * 109.46867 * 301.72576 * 1 2 3 29 29 H 1.09009 * 109.47161 * 61.71947 * 1 2 3 30 30 H 1.09003 * 109.47561 * 240.00416 * 2 1 3 31 31 H 1.08995 * 109.47524 * 120.00329 * 2 1 3 32 32 H 1.09003 * 109.46965 * 56.04385 * 4 3 2 33 33 H 1.08996 * 109.47010 * 176.03909 * 4 3 2 34 34 H 1.09000 * 109.46767 * 302.42797 * 5 4 3 35 35 H 1.08999 * 109.46706 * 62.42271 * 5 4 3 36 36 H 1.08991 * 109.47199 * 182.42731 * 5 4 3 37 37 H 1.09004 * 109.46800 * 300.00272 * 6 3 2 38 38 H 1.09004 * 109.47095 * 299.99776 * 7 6 3 39 39 H 1.08999 * 109.47626 * 59.99382 * 7 6 3 40 40 H 1.09001 * 109.47654 * 179.97438 * 8 7 6 41 41 H 1.08999 * 109.47219 * 299.99772 * 8 7 6 42 42 H 1.09002 * 109.46748 * 180.02562 * 9 8 7 43 43 H 0.97000 * 120.00483 * 265.76828 * 10 9 8 44 44 H 0.97003 * 119.99820 * 179.97438 * 15 14 12 45 45 H 1.08999 * 109.47134 * 299.99908 * 25 9 8 46 46 H 1.09005 * 109.46796 * 179.97438 * 25 9 8 47 47 H 1.09001 * 109.47352 * 179.97438 * 26 25 9 48 48 H 1.08999 * 109.47490 * 59.99759 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6265 2.0824 -1.2316 5 6 2.2961 1.4125 -2.4331 6 6 1.5496 2.1096 1.1883 7 6 2.0781 3.5449 1.1527 8 6 1.5881 4.2998 2.3900 9 6 2.0992 3.5991 3.6505 10 7 3.5640 3.5799 3.6386 11 6 4.2734 4.6599 4.1297 12 6 3.6015 5.7156 4.7345 13 1 2.7475 6.1623 4.2472 14 6 4.0343 6.2028 5.9829 15 7 3.7497 7.4235 6.3404 16 14 5.0163 5.0995 7.1266 17 1 6.4544 5.1636 6.7620 18 1 4.8400 5.5575 8.5282 19 1 4.5351 3.7005 6.9987 20 6 5.6801 4.6905 4.0170 21 6 6.4025 5.8700 4.3876 22 7 6.9779 6.8031 4.6817 23 6 6.3846 3.5420 3.5321 24 7 6.9442 2.6286 3.1466 25 6 1.5706 2.1638 3.6861 26 6 2.0607 1.4090 2.4488 27 1 -0.3634 -1.0271 0.0309 28 1 -0.3633 0.5404 0.8741 29 1 -0.3634 0.4869 -0.9051 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 0.5435 2.0351 -1.3460 33 1 1.9406 3.1246 -1.1750 34 1 3.3777 1.4216 -2.2980 35 1 1.9489 0.3825 -2.5150 36 1 2.0390 1.9560 -3.3422 37 1 0.4597 2.1242 1.1974 38 1 3.1680 3.5306 1.1434 39 1 1.7137 4.0442 0.2549 40 1 1.9650 5.3222 2.3648 41 1 0.4982 4.3141 2.3988 42 1 1.7497 4.1367 4.5320 43 1 4.0361 2.8094 3.2860 44 1 4.0475 7.7589 7.2004 45 1 0.4807 2.1781 3.6949 46 1 1.9351 1.6645 4.5839 47 1 1.6845 0.3863 2.4744 48 1 3.1505 1.3947 2.4400 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173104475.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:34 Heat of formation + Delta-G solvation = 38.333406 kcal Electronic energy + Delta-G solvation = -27427.705573 eV Core-core repulsion = 23902.459527 eV Total energy + Delta-G solvation = -3525.246046 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.96731 -39.18768 -37.68046 -36.63123 -36.03539 -34.78410 -32.67070 -32.20201 -31.22776 -30.12798 -28.65110 -27.87989 -25.12291 -23.45467 -23.11080 -22.57347 -21.09209 -20.33805 -19.85318 -18.89292 -18.00974 -17.36045 -17.03852 -16.53980 -15.82697 -15.70851 -15.37912 -15.07873 -14.80965 -14.73381 -14.51632 -14.32297 -14.00481 -13.98700 -13.86434 -13.63356 -13.53003 -13.38853 -13.19708 -13.09265 -12.96810 -12.89709 -12.74806 -12.57239 -12.53714 -12.28935 -12.22464 -12.08741 -11.98880 -11.86979 -11.71273 -11.42697 -11.19287 -11.04337 -10.88538 -10.50792 -9.06191 -9.03286 -8.33013 -6.98270 0.81913 1.36484 1.41644 1.49268 1.97563 2.15801 2.20640 2.34886 2.60274 2.86903 3.02379 3.35853 3.78377 3.83940 3.90817 4.04745 4.19888 4.29835 4.34138 4.39145 4.40971 4.47238 4.50656 4.56201 4.64738 4.65257 4.68802 4.69218 4.78703 4.84594 4.99814 5.04182 5.08545 5.13288 5.17225 5.23081 5.27313 5.28365 5.35833 5.37132 5.43505 5.50214 5.51996 5.59988 5.78848 6.20551 6.30159 6.33028 6.37643 6.80024 7.00836 7.12700 7.35202 7.98070 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.017698 B = 0.003998 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.687346 B = 7002.543544 C = 7470.853569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.044 3.956 3 N -0.548 5.548 4 C 0.042 3.958 5 C -0.145 4.145 6 C 0.093 3.907 7 C -0.108 4.108 8 C -0.125 4.125 9 C 0.144 3.856 10 N -0.708 5.708 11 C 0.431 3.569 12 C -0.476 4.476 13 H 0.110 0.890 14 C 0.098 3.902 15 N -0.785 5.785 16 Si 0.910 3.090 17 H -0.273 1.273 18 H -0.269 1.269 19 H -0.232 1.232 20 C -0.330 4.330 21 C 0.327 3.673 22 N -0.551 5.551 23 C 0.309 3.691 24 N -0.539 5.539 25 C -0.118 4.118 26 C -0.110 4.110 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.042 0.958 33 H 0.070 0.930 34 H 0.048 0.952 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.056 0.944 38 H 0.047 0.953 39 H 0.064 0.936 40 H 0.053 0.947 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.390 0.610 44 H 0.298 0.702 45 H 0.098 0.902 46 H 0.072 0.928 47 H 0.077 0.923 48 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.499 -12.824 -8.724 21.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.084 4.084 3 N -0.272 5.272 4 C -0.085 4.085 5 C -0.202 4.202 6 C -0.015 4.015 7 C -0.146 4.146 8 C -0.164 4.164 9 C 0.040 3.960 10 N -0.331 5.331 11 C 0.311 3.689 12 C -0.508 4.508 13 H 0.128 0.872 14 C -0.129 4.129 15 N -0.408 5.408 16 Si 0.732 3.268 17 H -0.198 1.198 18 H -0.194 1.194 19 H -0.155 1.155 20 C -0.351 4.351 21 C 0.020 3.980 22 N -0.234 5.234 23 C 0.003 3.997 24 N -0.222 5.222 25 C -0.156 4.156 26 C -0.148 4.148 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.226 0.774 44 H 0.110 0.890 45 H 0.117 0.883 46 H 0.090 0.910 47 H 0.095 0.905 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -13.510 -12.593 -8.715 20.422 hybrid contribution -0.180 0.007 0.383 0.423 sum -13.690 -12.586 -8.333 20.378 Atomic orbital electron populations 1.22347 0.97432 1.02768 1.01916 1.22238 0.93543 0.89788 1.02832 1.62250 1.60278 1.02684 1.02025 1.22177 0.98066 0.98568 0.89703 1.21765 1.00712 1.00834 0.96913 1.21573 0.97409 0.92850 0.89699 1.21555 1.00560 0.94658 0.97837 1.21924 1.01398 0.98954 0.94148 1.21103 0.78689 0.97286 0.98909 1.45471 1.06539 1.15973 1.65122 1.17029 0.86140 0.85427 0.80320 1.18863 1.15166 1.12559 1.04261 0.87229 1.26352 0.92681 0.94378 0.99486 1.69466 1.34548 1.14619 1.22120 0.86246 0.80607 0.81962 0.77991 1.19808 1.19436 1.15484 1.12886 0.89557 0.88863 1.43765 1.24739 0.91479 0.91741 0.90051 1.80959 1.10739 1.12826 1.18877 1.25390 0.92273 0.91828 0.90255 1.81190 1.08393 1.12968 1.19645 1.21792 1.02300 0.93471 0.98050 1.21569 1.00352 0.99458 0.93414 0.91313 0.92355 0.92671 0.90532 0.90696 0.94013 0.91163 0.93322 0.92239 0.91452 0.92669 0.93461 0.91722 0.92781 0.89404 0.89069 0.77368 0.89047 0.88342 0.90967 0.90472 0.93440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.48 9.24 71.98 0.66 -1.81 16 2 C 0.04 0.71 5.47 86.30 0.47 1.19 16 3 N -0.55 -10.95 4.60 -870.99 -4.00 -14.95 16 4 C 0.04 0.77 5.18 86.30 0.45 1.22 16 5 C -0.14 -2.39 9.73 71.98 0.70 -1.69 16 6 C 0.09 1.82 1.55 44.91 0.07 1.89 16 7 C -0.11 -2.53 4.71 30.59 0.14 -2.39 16 8 C -0.13 -2.96 5.59 30.60 0.17 -2.79 16 9 C 0.14 3.68 2.58 44.99 0.12 3.80 16 10 N -0.71 -22.96 4.28 -318.16 -1.36 -24.32 16 11 C 0.43 17.27 5.37 39.03 0.21 17.48 16 12 C -0.48 -20.39 7.37 23.08 0.17 -20.22 16 13 H 0.11 4.74 7.08 -2.91 -0.02 4.72 16 14 C 0.10 4.43 4.46 85.55 0.38 4.82 16 15 N -0.79 -37.33 13.90 21.98 0.31 -37.02 16 16 Si 0.91 38.41 25.57 68.60 1.75 40.16 16 17 H -0.27 -12.88 6.16 99.48 0.61 -12.26 16 18 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 19 H -0.23 -9.08 7.11 99.48 0.71 -8.37 16 20 C -0.33 -14.78 4.55 -20.07 -0.09 -14.87 16 21 C 0.33 16.39 10.72 88.34 0.95 17.34 16 22 N -0.55 -29.18 18.53 18.99 0.35 -28.83 16 23 C 0.31 13.73 14.11 88.30 1.25 14.97 16 24 N -0.54 -24.34 18.55 19.03 0.35 -23.99 16 25 C -0.12 -2.28 5.61 30.59 0.17 -2.11 16 26 C -0.11 -2.20 4.80 30.59 0.15 -2.06 16 27 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.06 0.80 6.31 -2.39 -0.02 0.79 16 29 H 0.05 0.74 6.49 -2.38 -0.02 0.73 16 30 H 0.08 1.21 6.27 -2.39 -0.01 1.20 16 31 H 0.07 1.26 6.30 -2.39 -0.02 1.24 16 32 H 0.04 0.68 6.26 -2.39 -0.01 0.67 16 33 H 0.07 1.40 5.80 -2.39 -0.01 1.39 16 34 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.06 0.88 6.53 -2.39 -0.02 0.87 16 36 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.06 0.97 6.27 -2.38 -0.01 0.96 16 38 H 0.05 1.39 7.61 -2.38 -0.02 1.37 16 39 H 0.06 1.42 6.18 -2.39 -0.01 1.41 16 40 H 0.05 1.54 7.41 -2.39 -0.02 1.52 16 41 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.09 2.51 7.00 -2.39 -0.02 2.50 16 43 H 0.39 12.74 5.71 -92.71 -0.53 12.21 16 44 H 0.30 13.30 8.29 -92.71 -0.77 12.54 16 45 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 47 H 0.08 1.33 6.41 -2.39 -0.02 1.31 16 48 H 0.05 1.19 6.50 -2.39 -0.02 1.18 16 Total: -1.00 -54.95 368.12 3.74 -51.21 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: 0.37 Total: 22.98 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: 5.97 Total: 14.76 kcal Atomic # 7 Polarization: -124.75 SS G_CDS: -4.35 Total: -129.11 kcal Atomic # 14 Polarization: 38.41 SS G_CDS: 1.75 Total: 40.16 kcal Total: -54.95 3.74 -51.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173104475.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.543 kcal (2) G-P(sol) polarization free energy of solvation -54.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds