Wall clock time and date at job start Tue Mar 31 2020 11:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00013 * 2 1 4 4 H 1.48498 * 109.47234 * 274.98984 * 3 2 1 5 5 H 1.48501 * 109.46986 * 34.99344 * 3 2 1 6 6 H 1.48502 * 109.47274 * 154.99337 * 3 2 1 7 7 C 1.37883 * 119.99821 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99360 * 189.56851 * 7 2 1 9 9 C 1.50698 * 120.00032 * 9.57682 * 7 2 1 10 10 C 1.53001 * 109.46985 * 185.44486 * 9 7 2 11 11 C 1.53001 * 109.47012 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47131 * 60.00015 * 11 10 9 13 13 N 1.46900 * 109.47069 * 179.97438 * 12 11 10 14 14 C 1.46899 * 110.99861 * 204.99958 * 13 12 11 15 15 H 1.09000 * 110.27775 * 324.36437 * 14 13 12 16 16 C 1.54598 * 110.30920 * 202.17040 * 14 13 12 17 17 C 1.54936 * 102.92220 * 219.12734 * 16 14 13 18 18 N 1.48526 * 103.22646 * 37.41349 * 17 16 14 19 19 C 1.38408 * 110.99706 * 200.28069 * 18 17 16 20 20 N 1.32492 * 119.21994 * 117.12997 * 19 18 17 21 21 C 1.32274 * 120.74290 * 179.71399 * 20 19 18 22 22 C 1.38610 * 119.19223 * 0.54407 * 21 20 19 23 23 C 1.38600 * 118.56059 * 359.72827 * 22 21 20 24 24 N 1.32272 * 119.19557 * 0.02562 * 23 22 21 25 25 C 1.47903 * 105.82022 * 320.79069 * 18 17 16 26 26 C 1.53001 * 109.47160 * 299.99894 * 12 11 10 27 27 C 1.53000 * 109.47410 * 65.44347 * 9 7 2 28 28 H 0.96994 * 119.99865 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.46833 * 305.44137 * 9 7 2 30 30 H 1.09004 * 109.47381 * 59.99567 * 10 9 7 31 31 H 1.08999 * 109.47050 * 299.99519 * 10 9 7 32 32 H 1.08999 * 109.47085 * 299.99822 * 11 10 9 33 33 H 1.09006 * 109.46925 * 179.97438 * 11 10 9 34 34 H 1.08999 * 109.47293 * 59.99934 * 12 11 10 35 35 H 1.00899 * 110.99718 * 328.95099 * 13 12 11 36 36 H 1.08998 * 110.72025 * 337.48970 * 16 14 13 37 37 H 1.09006 * 110.72491 * 100.76307 * 16 14 13 38 38 H 1.09001 * 110.66586 * 278.97488 * 17 16 14 39 39 H 1.09000 * 110.80707 * 155.91630 * 17 16 14 40 40 H 1.07995 * 120.40467 * 180.29512 * 21 20 19 41 41 H 1.07997 * 120.71387 * 179.70724 * 22 21 20 42 42 H 1.07996 * 120.40191 * 180.02562 * 23 22 21 43 43 H 1.08994 * 109.92056 * 265.97775 * 25 18 17 44 44 H 1.09007 * 109.91570 * 144.68493 * 25 18 17 45 45 H 1.08996 * 109.47219 * 179.97438 * 26 12 11 46 46 H 1.08999 * 109.47050 * 300.00189 * 26 12 11 47 47 H 1.09001 * 109.46674 * 300.00100 * 27 9 7 48 48 H 1.08999 * 109.47293 * 60.00072 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3912 2.1073 -1.3947 5 1 1.5034 2.6199 0.8029 6 1 3.5955 1.4120 0.5918 7 6 2.0046 -1.1941 -0.0005 8 1 3.0733 -1.2006 0.1550 9 6 1.2668 -2.4900 -0.2182 10 6 2.2323 -3.6631 -0.0378 11 6 1.4832 -4.9788 -0.2582 12 6 0.9065 -5.0061 -1.6751 13 7 0.1877 -6.2696 -1.8869 14 6 0.1364 -6.6132 -3.3143 15 1 0.0358 -5.7104 -3.9167 16 6 -1.0381 -7.5795 -3.5917 17 6 -0.4411 -8.5609 -4.6314 18 7 0.9620 -8.7283 -4.1741 19 6 1.7657 -9.1945 -5.2001 20 7 2.7638 -8.4390 -5.6341 21 6 3.5539 -8.8571 -6.6090 22 6 3.3202 -10.0964 -7.1842 23 6 2.2642 -10.8585 -6.7098 24 7 1.5152 -10.3833 -5.7286 25 6 1.4015 -7.3901 -3.7229 26 6 -0.0590 -3.8331 -1.8555 27 6 0.6906 -2.5170 -1.6353 28 1 -0.4850 0.8400 0.0004 29 1 0.4558 -2.5723 0.5054 30 1 2.6429 -3.6438 0.9718 31 1 3.0433 -3.5807 -0.7615 32 1 0.6724 -5.0609 0.4657 33 1 2.1712 -5.8145 -0.1301 34 1 1.7173 -4.9240 -2.3990 35 1 0.6030 -7.0162 -1.3500 36 1 -1.3255 -8.1081 -2.6828 37 1 -1.8885 -7.0424 -4.0119 38 1 -0.4709 -8.1272 -5.6310 39 1 -0.9688 -9.5144 -4.6113 40 1 4.3688 -8.2388 -6.9554 41 1 3.9471 -10.4599 -7.9849 42 1 2.0555 -11.8286 -7.1361 43 1 1.9089 -6.8720 -4.5366 44 1 2.0699 -7.4878 -2.8673 45 1 -0.4695 -3.8523 -2.8651 46 1 -0.8698 -3.9152 -1.1317 47 1 0.0027 -1.6813 -1.7638 48 1 1.5015 -2.4347 -2.3590 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173324074.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:24 Heat of formation + Delta-G solvation = 57.775680 kcal Electronic energy + Delta-G solvation = -26393.524106 eV Core-core repulsion = 22869.121141 eV Total energy + Delta-G solvation = -3524.402965 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.55927 -39.34231 -37.73374 -34.80030 -34.07003 -32.83421 -31.71656 -29.81362 -29.73323 -28.98716 -26.98823 -24.78526 -24.31073 -23.73595 -21.84449 -21.70903 -20.63410 -20.12991 -18.67512 -18.17324 -17.74963 -16.27455 -16.18375 -15.96215 -15.48408 -15.14144 -14.79887 -14.51239 -14.30373 -13.92342 -13.82488 -13.27055 -12.99279 -12.84481 -12.78086 -12.58457 -12.18861 -11.91191 -11.79947 -11.39535 -11.24703 -11.22096 -11.16091 -10.98302 -10.79897 -10.67080 -10.45122 -10.41334 -10.27939 -10.13532 -9.88209 -9.51202 -9.28058 -8.80073 -8.72106 -8.65967 -8.24528 -8.13590 -5.95675 -3.96616 0.59918 0.78262 2.94653 3.33321 3.40743 3.43038 3.43712 3.78915 4.18425 4.27319 4.38856 4.49290 4.62619 4.67541 4.78765 4.80374 4.96638 5.18523 5.24606 5.35735 5.38308 5.48830 5.50007 5.58020 5.63010 5.73365 5.85672 5.94135 5.96863 6.01614 6.19036 6.27018 6.38801 6.43395 6.45231 6.47405 6.62056 6.71469 6.81393 6.93290 6.99017 7.15691 7.25933 7.41976 7.55217 7.62844 7.81845 7.82945 8.07354 8.11364 8.53140 9.07984 9.66240 11.13257 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.023058 B = 0.002508 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.022944 B =11161.092408 C =11733.827089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.884 3.116 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.515 4.515 8 H 0.053 0.947 9 C 0.047 3.953 10 C -0.105 4.105 11 C -0.116 4.116 12 C 0.091 3.909 13 N -0.675 5.675 14 C 0.080 3.920 15 H 0.090 0.910 16 C -0.113 4.113 17 C 0.055 3.945 18 N -0.444 5.444 19 C 0.487 3.513 20 N -0.550 5.550 21 C 0.172 3.828 22 C -0.263 4.263 23 C 0.171 3.829 24 N -0.527 5.527 25 C 0.012 3.988 26 C -0.101 4.101 27 C -0.103 4.103 28 H 0.259 0.741 29 H 0.033 0.967 30 H 0.048 0.952 31 H 0.044 0.956 32 H 0.064 0.936 33 H 0.042 0.958 34 H 0.038 0.962 35 H 0.339 0.661 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.050 0.950 39 H 0.096 0.904 40 H 0.168 0.832 41 H 0.147 0.853 42 H 0.170 0.830 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.037 0.963 46 H 0.060 0.940 47 H 0.072 0.928 48 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.340 -21.057 -14.584 25.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.712 3.288 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.553 4.553 8 H 0.071 0.929 9 C 0.029 3.971 10 C -0.143 4.143 11 C -0.154 4.154 12 C -0.018 4.018 13 N -0.305 5.305 14 C -0.032 4.032 15 H 0.108 0.892 16 C -0.151 4.151 17 C -0.071 4.071 18 N -0.164 5.164 19 C 0.131 3.869 20 N -0.269 5.269 21 C 0.005 3.995 22 C -0.287 4.287 23 C 0.003 3.997 24 N -0.244 5.244 25 C -0.117 4.117 26 C -0.139 4.139 27 C -0.142 4.142 28 H 0.068 0.932 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.159 0.841 36 H 0.106 0.894 37 H 0.100 0.900 38 H 0.069 0.931 39 H 0.114 0.886 40 H 0.185 0.815 41 H 0.164 0.836 42 H 0.187 0.813 43 H 0.103 0.897 44 H 0.102 0.898 45 H 0.056 0.944 46 H 0.079 0.921 47 H 0.091 0.909 48 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 0.960 -20.645 -13.343 24.601 hybrid contribution 2.171 0.720 -1.526 2.749 sum 3.130 -19.925 -14.869 25.057 Atomic orbital electron populations 1.69975 1.05857 1.26307 1.50481 1.24959 0.94735 0.98903 0.95229 0.86717 0.80104 0.84101 0.77905 1.20817 1.21377 1.19978 1.21218 0.94010 0.91229 1.48839 0.92890 1.18661 0.94027 0.91406 0.93025 1.21588 0.98648 0.94225 0.99877 1.21724 0.99375 0.98409 0.95884 1.21614 0.94396 0.89052 0.96727 1.60666 1.58319 1.05747 1.05803 1.22503 0.92332 0.97439 0.90935 0.89233 1.22597 0.97580 0.95941 0.99001 1.23267 0.85156 1.01148 0.97534 1.61262 1.03081 1.25987 1.26059 1.21333 0.90499 0.87111 0.87910 1.68379 1.08363 1.35195 1.14946 1.23134 0.94706 0.93116 0.88530 1.22757 1.02269 0.98408 1.05247 1.23132 0.88567 0.98751 0.89273 1.68064 1.31344 1.13152 1.11886 1.23861 0.99092 0.86522 1.02261 1.21594 0.98004 0.94624 0.99663 1.21557 0.98597 0.94760 0.99260 0.93155 0.94904 0.93283 0.93698 0.91696 0.93955 0.94375 0.84131 0.89351 0.89964 0.93133 0.88555 0.81468 0.83561 0.81338 0.89665 0.89757 0.94383 0.92096 0.90917 0.94890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.72 12.16 55.43 0.67 -25.04 16 2 C 0.06 1.76 5.20 -17.82 -0.09 1.67 16 3 Si 0.88 21.45 29.55 -169.99 -5.02 16.43 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.51 -14.21 8.48 -34.44 -0.29 -14.50 16 8 H 0.05 1.45 7.77 -52.48 -0.41 1.05 16 9 C 0.05 1.17 1.96 -91.77 -0.18 0.99 16 10 C -0.11 -2.18 5.14 -26.73 -0.14 -2.31 16 11 C -0.12 -2.00 5.19 -26.73 -0.14 -2.14 16 12 C 0.09 1.50 2.35 -67.71 -0.16 1.34 16 13 N -0.68 -9.37 6.03 -98.32 -0.59 -9.96 16 14 C 0.08 0.98 3.09 -66.36 -0.20 0.78 16 15 H 0.09 1.19 7.19 -51.93 -0.37 0.81 16 16 C -0.11 -1.18 6.78 -24.87 -0.17 -1.35 16 17 C 0.05 0.57 6.31 -1.90 -0.01 0.56 16 18 N -0.44 -5.49 5.35 -171.43 -0.92 -6.40 16 19 C 0.49 6.12 6.98 -322.81 -2.25 3.86 16 20 N -0.55 -6.56 8.14 -13.93 -0.11 -6.68 16 21 C 0.17 1.47 11.30 -17.22 -0.19 1.27 16 22 C -0.26 -1.75 10.16 -39.31 -0.40 -2.15 16 23 C 0.17 1.35 11.30 -17.23 -0.19 1.15 16 24 N -0.53 -6.05 10.21 -13.93 -0.14 -6.19 16 25 C 0.01 0.14 5.82 -2.76 -0.02 0.13 16 26 C -0.10 -1.93 5.41 -26.71 -0.14 -2.07 16 27 C -0.10 -2.38 5.04 -26.71 -0.13 -2.51 16 28 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.03 0.90 8.09 -51.93 -0.42 0.48 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.04 0.64 8.12 -51.93 -0.42 0.22 16 34 H 0.04 0.65 7.73 -51.93 -0.40 0.25 16 35 H 0.34 4.45 7.84 -39.29 -0.31 4.14 16 36 H 0.09 0.95 8.06 -51.93 -0.42 0.53 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.05 0.53 7.99 -51.93 -0.42 0.11 16 39 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.17 0.91 8.06 -52.49 -0.42 0.49 16 41 H 0.15 0.49 8.06 -52.49 -0.42 0.06 16 42 H 0.17 0.73 8.06 -52.49 -0.42 0.31 16 43 H 0.09 1.14 6.46 -51.93 -0.34 0.80 16 44 H 0.08 1.12 7.62 -51.93 -0.40 0.72 16 45 H 0.04 0.68 7.45 -51.93 -0.39 0.29 16 46 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 47 H 0.07 1.89 6.91 -51.93 -0.36 1.53 16 48 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 374.00 15.07 5.64 5.64 Total: -1.00 -30.94 374.00 -13.21 -44.15 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -8.01 Total: 3.34 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: -4.72 Total: -15.29 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: -1.09 Total: -54.27 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.94 -13.21 -44.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173324074.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.924 kcal (2) G-P(sol) polarization free energy of solvation -30.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds