Wall clock time and date at job start Tue Mar 31 2020 11:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00013 * 2 1 4 4 H 1.48498 * 109.47234 * 274.98984 * 3 2 1 5 5 H 1.48501 * 109.46986 * 34.99344 * 3 2 1 6 6 H 1.48502 * 109.47274 * 154.99337 * 3 2 1 7 7 C 1.37883 * 119.99821 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99360 * 189.56851 * 7 2 1 9 9 C 1.50698 * 120.00032 * 9.57682 * 7 2 1 10 10 C 1.53001 * 109.46985 * 185.44486 * 9 7 2 11 11 C 1.53001 * 109.47012 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47131 * 60.00015 * 11 10 9 13 13 N 1.46900 * 109.47069 * 179.97438 * 12 11 10 14 14 C 1.46899 * 110.99861 * 204.99958 * 13 12 11 15 15 H 1.09000 * 110.27775 * 324.36437 * 14 13 12 16 16 C 1.54598 * 110.30920 * 202.17040 * 14 13 12 17 17 C 1.54936 * 102.92220 * 219.12734 * 16 14 13 18 18 N 1.48526 * 103.22646 * 37.41349 * 17 16 14 19 19 C 1.38408 * 110.99706 * 200.28069 * 18 17 16 20 20 N 1.32492 * 119.21994 * 117.12997 * 19 18 17 21 21 C 1.32274 * 120.74290 * 179.71399 * 20 19 18 22 22 C 1.38610 * 119.19223 * 0.54407 * 21 20 19 23 23 C 1.38600 * 118.56059 * 359.72827 * 22 21 20 24 24 N 1.32272 * 119.19557 * 0.02562 * 23 22 21 25 25 C 1.47903 * 105.82022 * 320.79069 * 18 17 16 26 26 C 1.53001 * 109.47160 * 299.99894 * 12 11 10 27 27 C 1.53000 * 109.47410 * 65.44347 * 9 7 2 28 28 H 0.96994 * 119.99865 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.46833 * 305.44137 * 9 7 2 30 30 H 1.09004 * 109.47381 * 59.99567 * 10 9 7 31 31 H 1.08999 * 109.47050 * 299.99519 * 10 9 7 32 32 H 1.08999 * 109.47085 * 299.99822 * 11 10 9 33 33 H 1.09006 * 109.46925 * 179.97438 * 11 10 9 34 34 H 1.08999 * 109.47293 * 59.99934 * 12 11 10 35 35 H 1.00899 * 110.99718 * 328.95099 * 13 12 11 36 36 H 1.08998 * 110.72025 * 337.48970 * 16 14 13 37 37 H 1.09006 * 110.72491 * 100.76307 * 16 14 13 38 38 H 1.09001 * 110.66586 * 278.97488 * 17 16 14 39 39 H 1.09000 * 110.80707 * 155.91630 * 17 16 14 40 40 H 1.07995 * 120.40467 * 180.29512 * 21 20 19 41 41 H 1.07997 * 120.71387 * 179.70724 * 22 21 20 42 42 H 1.07996 * 120.40191 * 180.02562 * 23 22 21 43 43 H 1.08994 * 109.92056 * 265.97775 * 25 18 17 44 44 H 1.09007 * 109.91570 * 144.68493 * 25 18 17 45 45 H 1.08996 * 109.47219 * 179.97438 * 26 12 11 46 46 H 1.08999 * 109.47050 * 300.00189 * 26 12 11 47 47 H 1.09001 * 109.46674 * 300.00100 * 27 9 7 48 48 H 1.08999 * 109.47293 * 60.00072 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3912 2.1073 -1.3947 5 1 1.5034 2.6199 0.8029 6 1 3.5955 1.4120 0.5918 7 6 2.0046 -1.1941 -0.0005 8 1 3.0733 -1.2006 0.1550 9 6 1.2668 -2.4900 -0.2182 10 6 2.2323 -3.6631 -0.0378 11 6 1.4832 -4.9788 -0.2582 12 6 0.9065 -5.0061 -1.6751 13 7 0.1877 -6.2696 -1.8869 14 6 0.1364 -6.6132 -3.3143 15 1 0.0358 -5.7104 -3.9167 16 6 -1.0381 -7.5795 -3.5917 17 6 -0.4411 -8.5609 -4.6314 18 7 0.9620 -8.7283 -4.1741 19 6 1.7657 -9.1945 -5.2001 20 7 2.7638 -8.4390 -5.6341 21 6 3.5539 -8.8571 -6.6090 22 6 3.3202 -10.0964 -7.1842 23 6 2.2642 -10.8585 -6.7098 24 7 1.5152 -10.3833 -5.7286 25 6 1.4015 -7.3901 -3.7229 26 6 -0.0590 -3.8331 -1.8555 27 6 0.6906 -2.5170 -1.6353 28 1 -0.4850 0.8400 0.0004 29 1 0.4558 -2.5723 0.5054 30 1 2.6429 -3.6438 0.9718 31 1 3.0433 -3.5807 -0.7615 32 1 0.6724 -5.0609 0.4657 33 1 2.1712 -5.8145 -0.1301 34 1 1.7173 -4.9240 -2.3990 35 1 0.6030 -7.0162 -1.3500 36 1 -1.3255 -8.1081 -2.6828 37 1 -1.8885 -7.0424 -4.0119 38 1 -0.4709 -8.1272 -5.6310 39 1 -0.9688 -9.5144 -4.6113 40 1 4.3688 -8.2388 -6.9554 41 1 3.9471 -10.4599 -7.9849 42 1 2.0555 -11.8286 -7.1361 43 1 1.9089 -6.8720 -4.5366 44 1 2.0699 -7.4878 -2.8673 45 1 -0.4695 -3.8523 -2.8651 46 1 -0.8698 -3.9152 -1.1317 47 1 0.0027 -1.6813 -1.7638 48 1 1.5015 -2.4347 -2.3590 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173324074.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:24 Heat of formation + Delta-G solvation = 39.541386 kcal Electronic energy + Delta-G solvation = -26394.314805 eV Core-core repulsion = 22869.121141 eV Total energy + Delta-G solvation = -3525.193664 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.28657 -40.36165 -39.13126 -36.15528 -34.76958 -34.40858 -32.96161 -31.41546 -30.76566 -30.22391 -28.30277 -26.07053 -25.34696 -24.75187 -23.41214 -22.60367 -22.05489 -21.31479 -20.34944 -18.95509 -18.48229 -18.38101 -16.93286 -16.91838 -16.61992 -16.33811 -15.94894 -15.65005 -15.41265 -15.20387 -14.71018 -14.67062 -14.51683 -14.12744 -14.06680 -13.66105 -13.49209 -13.25960 -13.10114 -12.91364 -12.77792 -12.65124 -12.50139 -12.14245 -11.95783 -11.94179 -11.88094 -11.83796 -11.72548 -11.59568 -11.15430 -11.13765 -10.62949 -10.52966 -10.38063 -10.21119 -9.50089 -9.31656 -8.10202 -6.18333 -0.06334 0.15784 1.39779 1.41177 1.51152 2.19636 2.44381 2.74921 3.06138 3.17048 3.19976 3.50208 3.78135 3.78771 3.82613 3.97206 4.07814 4.15211 4.23213 4.24122 4.34606 4.39053 4.46418 4.61210 4.63269 4.70178 4.73614 4.79872 4.86497 4.87135 4.88049 4.96365 4.99777 5.08445 5.16583 5.20410 5.30739 5.34618 5.40763 5.45851 5.51368 5.63577 5.70217 5.71529 6.05521 6.11610 6.18553 6.22904 6.43310 6.53851 6.95251 7.11801 7.48037 8.98101 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.023058 B = 0.002508 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.022944 B =11161.092408 C =11733.827089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.013 3.987 3 Si 0.947 3.053 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.535 4.535 8 H 0.050 0.950 9 C 0.044 3.956 10 C -0.099 4.099 11 C -0.108 4.108 12 C 0.104 3.896 13 N -0.671 5.671 14 C 0.082 3.918 15 H 0.081 0.919 16 C -0.103 4.103 17 C 0.062 3.938 18 N -0.454 5.454 19 C 0.462 3.538 20 N -0.578 5.578 21 C 0.154 3.846 22 C -0.243 4.243 23 C 0.160 3.840 24 N -0.550 5.550 25 C 0.024 3.976 26 C -0.090 4.090 27 C -0.094 4.094 28 H 0.260 0.740 29 H -0.004 1.004 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.039 0.961 35 H 0.348 0.652 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.047 0.953 39 H 0.102 0.898 40 H 0.194 0.806 41 H 0.186 0.814 42 H 0.204 0.796 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.051 0.949 46 H 0.046 0.954 47 H 0.036 0.964 48 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.540 -22.894 -16.229 28.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.185 4.185 3 Si 0.773 3.227 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.573 4.573 8 H 0.068 0.932 9 C 0.026 3.974 10 C -0.137 4.137 11 C -0.146 4.146 12 C -0.006 4.006 13 N -0.302 5.302 14 C -0.030 4.030 15 H 0.099 0.901 16 C -0.142 4.142 17 C -0.064 4.064 18 N -0.175 5.175 19 C 0.106 3.894 20 N -0.298 5.298 21 C -0.012 4.012 22 C -0.266 4.266 23 C -0.007 4.007 24 N -0.269 5.269 25 C -0.106 4.106 26 C -0.128 4.128 27 C -0.133 4.133 28 H 0.068 0.932 29 H 0.014 0.986 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.057 0.943 35 H 0.168 0.832 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.066 0.934 39 H 0.121 0.879 40 H 0.210 0.790 41 H 0.203 0.797 42 H 0.221 0.779 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.069 0.931 46 H 0.065 0.935 47 H 0.055 0.945 48 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 2.181 -22.510 -15.008 27.142 hybrid contribution 1.852 1.230 -1.097 2.479 sum 4.034 -21.280 -16.105 26.990 Atomic orbital electron populations 1.70101 1.07255 1.27077 1.51292 1.25728 0.95537 1.02299 0.94970 0.85714 0.78993 0.79937 0.78071 1.20205 1.21034 1.19240 1.21621 0.94100 0.92844 1.48773 0.93188 1.18629 0.93632 0.92295 0.92880 1.21453 0.98004 0.94443 0.99812 1.21623 0.99433 0.97373 0.96143 1.21323 0.93623 0.89357 0.96268 1.60563 1.57722 1.04899 1.07019 1.22495 0.93333 0.97523 0.89647 0.90100 1.22540 0.97062 0.95466 0.99118 1.23228 0.84655 1.01310 0.97221 1.61301 1.03714 1.25484 1.27004 1.21403 0.91225 0.87878 0.88876 1.68345 1.08999 1.36043 1.16401 1.23729 0.94964 0.94494 0.87990 1.23169 1.01493 0.97015 1.04884 1.23836 0.88386 1.00103 0.88364 1.68065 1.32656 1.12954 1.13202 1.23630 0.98618 0.86912 1.01414 1.21422 0.97685 0.93780 0.99934 1.21352 0.97966 0.95765 0.98199 0.93154 0.98570 0.93565 0.93421 0.92294 0.90951 0.94332 0.83158 0.89283 0.88913 0.93424 0.87943 0.78962 0.79651 0.77945 0.90818 0.90669 0.93066 0.93541 0.94499 0.95012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.77 12.16 21.45 0.26 -54.51 16 2 C 0.01 0.76 5.20 84.66 0.44 1.20 16 3 Si 0.95 44.54 29.55 68.60 2.03 46.57 16 4 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.54 -30.22 8.48 25.60 0.22 -30.00 16 8 H 0.05 2.78 7.77 -2.91 -0.02 2.76 16 9 C 0.04 2.25 1.96 -11.54 -0.02 2.23 16 10 C -0.10 -4.09 5.14 30.59 0.16 -3.94 16 11 C -0.11 -3.61 5.19 30.59 0.16 -3.46 16 12 C 0.10 3.33 2.35 44.92 0.11 3.44 16 13 N -0.67 -17.79 6.03 -464.99 -2.80 -20.59 16 14 C 0.08 1.93 3.09 45.79 0.14 2.08 16 15 H 0.08 2.08 7.19 -2.39 -0.02 2.06 16 16 C -0.10 -2.04 6.78 31.80 0.22 -1.82 16 17 C 0.06 1.24 6.31 86.65 0.55 1.78 16 18 N -0.45 -10.97 5.35 -696.29 -3.73 -14.70 16 19 C 0.46 11.28 6.98 261.49 1.83 13.11 16 20 N -0.58 -13.35 8.14 -197.99 -1.61 -14.96 16 21 C 0.15 2.32 11.30 84.72 0.96 3.27 16 22 C -0.24 -2.46 10.16 22.45 0.23 -2.24 16 23 C 0.16 2.11 11.30 84.71 0.96 3.07 16 24 N -0.55 -11.92 10.21 -198.00 -2.02 -13.94 16 25 C 0.02 0.58 5.82 86.44 0.50 1.08 16 26 C -0.09 -3.47 5.41 30.61 0.17 -3.30 16 27 C -0.09 -4.47 5.04 30.61 0.15 -4.32 16 28 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 29 H 0.00 -0.23 8.09 -2.39 -0.02 -0.25 16 30 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 31 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.07 2.03 8.12 -2.38 -0.02 2.01 16 34 H 0.04 1.27 7.73 -2.39 -0.02 1.25 16 35 H 0.35 8.51 7.84 -89.69 -0.70 7.81 16 36 H 0.09 1.77 8.06 -2.39 -0.02 1.75 16 37 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.05 0.97 7.99 -2.39 -0.02 0.95 16 39 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.19 1.65 8.06 -2.91 -0.02 1.62 16 41 H 0.19 0.35 8.06 -2.91 -0.02 0.32 16 42 H 0.20 1.04 8.06 -2.91 -0.02 1.02 16 43 H 0.07 1.97 6.46 -2.39 -0.02 1.96 16 44 H 0.07 1.95 7.62 -2.38 -0.02 1.93 16 45 H 0.05 1.82 7.45 -2.39 -0.02 1.80 16 46 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 47 H 0.04 1.99 6.91 -2.39 -0.02 1.97 16 48 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -69.35 374.00 -0.89 -70.24 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: 0.24 Total: 19.70 kcal Atomic # 6 Polarization: -24.57 SS G_CDS: 6.75 Total: -17.82 kcal Atomic # 7 Polarization: -108.79 SS G_CDS: -9.91 Total: -118.70 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -69.35 -0.89 -70.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173324074.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.781 kcal (2) G-P(sol) polarization free energy of solvation -69.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds