Wall clock time and date at job start Tue Mar 31 2020 10:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99765 * 2 1 4 4 H 1.48501 * 109.47290 * 274.99133 * 3 2 1 5 5 H 1.48503 * 109.47352 * 34.99087 * 3 2 1 6 6 H 1.48498 * 109.47058 * 154.98794 * 3 2 1 7 7 C 1.37873 * 120.00400 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00532 * 189.54830 * 7 2 1 9 9 C 1.50702 * 119.99618 * 9.55221 * 7 2 1 10 10 C 1.53003 * 109.46933 * 185.42739 * 9 7 2 11 11 C 1.53002 * 109.46945 * 299.99580 * 10 9 7 12 12 C 1.53005 * 109.47271 * 300.00268 * 11 10 9 13 13 N 1.46894 * 109.47416 * 180.02562 * 12 11 10 14 14 C 1.46892 * 111.00365 * 154.99774 * 13 12 11 15 15 C 1.52998 * 109.47299 * 179.97438 * 14 13 12 16 16 N 1.46905 * 109.46940 * 180.02562 * 15 14 13 17 17 C 1.46849 * 110.99967 * 170.00062 * 16 15 14 18 18 C 1.53029 * 109.52607 * 174.15950 * 17 16 15 19 19 C 1.53116 * 109.27912 * 59.17906 * 18 17 16 20 20 C 1.53117 * 109.16038 * 302.34697 * 19 18 17 21 21 F 1.39904 * 109.50573 * 177.59626 * 20 19 18 22 22 F 1.39905 * 109.50412 * 297.71282 * 20 19 18 23 23 C 1.46845 * 110.99997 * 45.79226 * 16 15 14 24 24 C 1.53001 * 109.47012 * 59.99840 * 12 11 10 25 25 C 1.52996 * 109.47360 * 65.42367 * 9 7 2 26 26 H 0.96998 * 119.99661 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47144 * 305.42218 * 9 7 2 28 28 H 1.08999 * 109.46753 * 180.02562 * 10 9 7 29 29 H 1.08993 * 109.47273 * 59.99485 * 10 9 7 30 30 H 1.08998 * 109.46901 * 59.99921 * 11 10 9 31 31 H 1.08996 * 109.46907 * 180.02562 * 11 10 9 32 32 H 1.09008 * 109.46989 * 300.00212 * 12 11 10 33 33 H 1.00900 * 111.00082 * 31.04121 * 13 12 11 34 34 H 1.09003 * 109.47719 * 300.00543 * 14 13 12 35 35 H 1.09002 * 109.47155 * 59.99737 * 14 13 12 36 36 H 1.08998 * 109.47057 * 299.99969 * 15 14 13 37 37 H 1.08997 * 109.47421 * 60.00518 * 15 14 13 38 38 H 1.09003 * 109.46128 * 294.17493 * 17 16 15 39 39 H 1.09002 * 109.45961 * 54.15326 * 17 16 15 40 40 H 1.08993 * 109.50746 * 179.12090 * 18 17 16 41 41 H 1.09004 * 109.50690 * 299.20167 * 18 17 16 42 42 H 1.08999 * 109.52261 * 62.24903 * 19 18 17 43 43 H 1.09002 * 109.52456 * 182.38226 * 19 18 17 44 44 H 1.08994 * 109.46307 * 305.84969 * 23 16 15 45 45 H 1.08998 * 109.46523 * 65.82166 * 23 16 15 46 46 H 1.09002 * 109.46866 * 180.02562 * 24 12 11 47 47 H 1.08998 * 109.47440 * 60.00174 * 24 12 11 48 48 H 1.09008 * 109.47082 * 180.02562 * 25 9 7 49 49 H 1.09001 * 109.47366 * 299.99580 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3912 2.1074 -1.3948 5 1 1.5033 2.6200 0.8029 6 1 3.5954 1.4121 0.5920 7 6 2.0047 -1.1940 0.0005 8 1 3.0734 -1.2004 0.1557 9 6 1.2668 -2.4901 -0.2155 10 6 2.2326 -3.6630 -0.0345 11 6 3.3703 -3.5482 -1.0512 12 6 2.7931 -3.5766 -2.4679 13 7 3.8854 -3.4671 -3.4439 14 6 3.5029 -4.0624 -4.7312 15 6 4.6630 -3.9289 -5.7197 16 7 4.2802 -4.5238 -7.0072 17 6 5.2679 -4.2083 -8.0471 18 6 4.9156 -4.9608 -9.3322 19 6 3.5142 -4.5487 -9.7913 20 6 2.5118 -4.8431 -8.6719 21 9 1.2372 -4.4189 -9.0627 22 9 2.4889 -6.2182 -8.4152 23 6 2.9338 -4.0940 -7.4059 24 6 1.8273 -2.4038 -2.6487 25 6 0.6897 -2.5185 -1.6321 26 1 -0.4849 0.8401 -0.0004 27 1 0.4563 -2.5719 0.5088 28 1 1.6990 -4.6004 -0.1912 29 1 2.6438 -3.6427 0.9746 30 1 3.9039 -2.6107 -0.8950 31 1 4.0580 -4.3840 -0.9226 32 1 2.2594 -4.5142 -2.6241 33 1 4.7314 -3.8868 -3.0886 34 1 3.2665 -5.1168 -4.5880 35 1 2.6286 -3.5445 -5.1255 36 1 4.8988 -2.8744 -5.8629 37 1 5.5376 -4.4466 -5.3257 38 1 5.2612 -3.1357 -8.2409 39 1 6.2594 -4.5103 -7.7098 40 1 5.6399 -4.7143 -10.1085 41 1 4.9361 -6.0340 -9.1429 42 1 3.5040 -3.4827 -10.0183 43 1 3.2422 -5.1136 -10.6830 44 1 2.2300 -4.3129 -6.6028 45 1 2.9381 -3.0219 -7.6026 46 1 1.4158 -2.4243 -3.6579 47 1 2.3609 -1.4663 -2.4925 48 1 0.1556 -3.4559 -1.7882 49 1 0.0016 -1.6830 -1.7610 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173331550.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:46 Heat of formation + Delta-G solvation = -116.449313 kcal Electronic energy + Delta-G solvation = -27765.691540 eV Core-core repulsion = 23783.044425 eV Total energy + Delta-G solvation = -3982.647114 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.202 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.09757 -47.09188 -39.22625 -38.11238 -35.38361 -33.51232 -31.95725 -30.56426 -29.65717 -29.32699 -26.87979 -24.97090 -24.27285 -23.26401 -21.89785 -21.07982 -20.44643 -20.36455 -18.64957 -17.66717 -17.11859 -16.61154 -15.94191 -15.74716 -15.64111 -15.18532 -14.77239 -14.44388 -14.24743 -14.05204 -13.85469 -13.76404 -13.43961 -13.34701 -13.06281 -12.99047 -12.83878 -12.71614 -12.35739 -12.18372 -11.60919 -11.56212 -11.35378 -11.28755 -11.16255 -11.03477 -10.99516 -10.84717 -10.54049 -10.50298 -10.26908 -10.08129 -9.70466 -9.15627 -8.82875 -8.72057 -8.63123 -8.21058 -8.07261 -5.94801 -3.93658 3.19047 3.34533 3.42038 3.44730 3.56875 3.79547 4.07132 4.16205 4.44003 4.50468 4.61443 4.78336 4.84853 4.96422 5.02562 5.14184 5.16127 5.29338 5.33560 5.37719 5.38528 5.49256 5.52671 5.58691 5.68096 5.76475 5.89200 5.89665 6.01367 6.26038 6.42171 6.50458 6.54055 6.57068 6.65884 6.70754 6.73481 6.84005 7.04464 7.18322 7.34677 7.52235 7.63464 7.68782 7.80990 7.97449 8.09818 8.53767 9.08660 9.68141 11.14830 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.018259 B = 0.002822 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.144670 B = 9921.214070 C =10021.836086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.063 3.937 3 Si 0.881 3.119 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.275 1.275 7 C -0.501 4.501 8 H 0.056 0.944 9 C 0.042 3.958 10 C -0.104 4.104 11 C -0.107 4.107 12 C 0.097 3.903 13 N -0.685 5.685 14 C 0.054 3.946 15 C 0.061 3.939 16 N -0.531 5.531 17 C 0.049 3.951 18 C -0.116 4.116 19 C -0.161 4.161 20 C 0.293 3.707 21 F -0.200 7.200 22 F -0.190 7.190 23 C 0.009 3.991 24 C -0.087 4.087 25 C -0.102 4.102 26 H 0.258 0.742 27 H 0.031 0.969 28 H 0.031 0.969 29 H 0.049 0.951 30 H 0.079 0.921 31 H 0.034 0.966 32 H 0.029 0.971 33 H 0.334 0.666 34 H 0.035 0.965 35 H 0.073 0.927 36 H 0.049 0.951 37 H 0.080 0.920 38 H 0.041 0.959 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.107 0.893 45 H 0.067 0.933 46 H 0.027 0.973 47 H 0.077 0.923 48 H 0.015 0.985 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.839 -9.919 -18.616 23.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.138 4.138 3 Si 0.709 3.291 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.200 1.200 7 C -0.539 4.539 8 H 0.074 0.926 9 C 0.024 3.976 10 C -0.143 4.143 11 C -0.145 4.145 12 C -0.012 4.012 13 N -0.316 5.316 14 C -0.076 4.076 15 C -0.067 4.067 16 N -0.256 5.256 17 C -0.079 4.079 18 C -0.154 4.154 19 C -0.199 4.199 20 C 0.256 3.744 21 F -0.181 7.181 22 F -0.171 7.171 23 C -0.120 4.120 24 C -0.125 4.125 25 C -0.141 4.141 26 H 0.068 0.932 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.097 0.903 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.152 0.848 34 H 0.054 0.946 35 H 0.092 0.908 36 H 0.067 0.933 37 H 0.098 0.902 38 H 0.059 0.941 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.110 0.890 43 H 0.107 0.893 44 H 0.125 0.875 45 H 0.085 0.915 46 H 0.046 0.954 47 H 0.096 0.904 48 H 0.034 0.966 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.484 -9.687 -18.741 23.130 hybrid contribution 0.268 0.829 -0.010 0.872 sum 9.751 -8.857 -18.751 22.916 Atomic orbital electron populations 1.69968 1.05900 1.26233 1.50884 1.24928 0.94659 0.98807 0.95405 0.86757 0.80113 0.84305 0.77920 1.20808 1.21550 1.19965 1.21122 0.93878 0.90738 1.48138 0.92591 1.18698 0.93937 0.92137 0.92860 1.21525 0.96872 0.98625 0.97228 1.21596 0.98060 1.01172 0.93695 1.21558 0.91219 0.97590 0.90793 1.60513 1.06862 1.60848 1.03374 1.22103 0.97359 0.97591 0.90542 1.22099 0.98669 0.98207 0.87701 1.61858 1.00655 1.59717 1.03392 1.22224 0.96199 0.98173 0.91328 1.21569 0.94812 1.02147 0.96831 1.22593 0.95415 1.04273 0.97622 1.20967 0.80284 0.77239 0.95875 1.93021 1.43050 1.89904 1.92155 1.93017 1.96523 1.32307 1.95230 1.23110 0.93763 0.98425 0.96696 1.21363 0.96175 0.98418 0.96591 1.21462 0.96682 0.98777 0.97167 0.93238 0.95126 0.94982 0.93266 0.90259 0.94751 0.95271 0.84845 0.94635 0.90850 0.93258 0.90153 0.94085 0.89615 0.89931 0.89952 0.89024 0.89296 0.87499 0.91496 0.95408 0.90426 0.96594 0.90929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.57 12.16 55.43 0.67 -24.89 16 2 C 0.06 1.73 5.20 -17.82 -0.09 1.63 16 3 Si 0.88 21.29 29.55 -169.99 -5.02 16.27 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.50 -13.28 6.63 -34.44 -0.23 -13.51 16 8 H 0.06 1.48 6.53 -52.49 -0.34 1.14 16 9 C 0.04 1.03 2.45 -91.77 -0.22 0.80 16 10 C -0.10 -2.14 5.42 -26.73 -0.14 -2.28 16 11 C -0.11 -1.97 4.97 -26.73 -0.13 -2.10 16 12 C 0.10 1.71 2.49 -67.71 -0.17 1.54 16 13 N -0.68 -10.15 6.31 -106.73 -0.67 -10.82 16 14 C 0.05 0.69 4.73 -3.83 -0.02 0.67 16 15 C 0.06 0.64 5.53 -3.82 -0.02 0.62 16 16 N -0.53 -5.28 4.74 -234.67 -1.11 -6.39 16 17 C 0.05 0.37 5.42 -3.84 -0.02 0.35 16 18 C -0.12 -0.76 5.96 -26.66 -0.16 -0.92 16 19 C -0.16 -1.19 5.52 -26.61 -0.15 -1.34 16 20 C 0.29 3.06 2.14 -26.65 -0.06 3.00 16 21 F -0.20 -2.38 17.07 2.25 0.04 -2.35 16 22 F -0.19 -2.35 16.60 2.25 0.04 -2.32 16 23 C 0.01 0.10 4.34 -3.83 -0.02 0.08 16 24 C -0.09 -1.81 5.21 -26.73 -0.14 -1.94 16 25 C -0.10 -2.37 5.29 -26.73 -0.14 -2.51 16 26 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.03 0.83 8.09 -51.93 -0.42 0.41 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.08 1.60 6.52 -51.93 -0.34 1.26 16 31 H 0.03 0.54 8.12 -51.93 -0.42 0.12 16 32 H 0.03 0.52 7.80 -51.92 -0.40 0.11 16 33 H 0.33 4.41 8.35 -39.29 -0.33 4.08 16 34 H 0.04 0.47 8.05 -51.93 -0.42 0.06 16 35 H 0.07 1.02 5.50 -51.93 -0.29 0.73 16 36 H 0.05 0.54 8.08 -51.93 -0.42 0.12 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.09 0.58 8.12 -51.93 -0.42 0.15 16 40 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.08 0.62 7.91 -51.93 -0.41 0.21 16 42 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.11 1.24 5.81 -51.93 -0.30 0.94 16 45 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.03 0.54 7.46 -51.93 -0.39 0.15 16 47 H 0.08 1.81 7.22 -51.93 -0.37 1.43 16 48 H 0.02 0.34 8.14 -51.92 -0.42 -0.09 16 49 H 0.07 1.89 6.90 -51.93 -0.36 1.53 16 LS Contribution 371.13 15.07 5.59 5.59 Total: -1.00 -28.60 371.13 -10.75 -39.36 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -8.57 Total: 1.46 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -1.71 Total: -15.91 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: -1.11 Total: -42.11 kcal Atomic # 9 Polarization: -4.74 SS G_CDS: 0.08 Total: -4.66 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -28.60 -10.75 -39.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331550.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.092 kcal (2) G-P(sol) polarization free energy of solvation -28.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds