Wall clock time and date at job start Tue Mar 31 2020 11:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99912 * 2 1 4 4 H 1.48499 * 109.47482 * 270.00224 * 3 2 1 5 5 H 1.48504 * 109.47000 * 29.99995 * 3 2 1 6 6 H 1.48499 * 109.47624 * 149.99786 * 3 2 1 7 7 C 1.37874 * 120.00419 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99823 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00097 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.47113 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47254 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47097 * 300.00079 * 11 10 9 13 13 N 1.46905 * 109.46971 * 180.02562 * 12 11 10 14 14 C 1.46908 * 110.99792 * 155.00141 * 13 12 11 15 15 H 1.09002 * 110.87141 * 37.38976 * 14 13 12 16 16 C 1.55136 * 110.98724 * 273.54503 * 14 13 12 17 17 C 1.54313 * 103.01827 * 206.21945 * 16 14 13 18 18 N 1.47446 * 107.23489 * 22.28029 * 17 16 14 19 19 C 1.38542 * 110.99615 * 123.25730 * 18 17 16 20 20 C 1.39667 * 120.53204 * 59.88413 * 19 18 17 21 21 C 1.38077 * 118.33384 * 180.29503 * 20 19 18 22 22 N 1.32581 * 119.19624 * 359.42070 * 21 20 19 23 23 C 1.31760 * 121.01516 * 0.61039 * 22 21 20 24 24 N 1.31781 * 121.83226 * 359.66722 * 23 22 21 25 25 C 1.47843 * 108.56360 * 0.99712 * 18 17 16 26 26 C 1.53000 * 109.47165 * 60.00343 * 12 11 10 27 27 C 1.52994 * 109.47085 * 299.99452 * 9 7 2 28 28 H 0.96993 * 120.00004 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47512 * 60.00146 * 9 7 2 30 30 H 1.09005 * 109.46966 * 59.99510 * 10 9 7 31 31 H 1.08998 * 109.47127 * 300.00321 * 10 9 7 32 32 H 1.08997 * 109.47360 * 179.97438 * 11 10 9 33 33 H 1.09005 * 109.47468 * 59.99898 * 11 10 9 34 34 H 1.08994 * 109.47341 * 299.99730 * 12 11 10 35 35 H 1.00893 * 110.99639 * 278.95229 * 13 12 11 36 36 H 1.08998 * 110.70580 * 87.83745 * 16 14 13 37 37 H 1.08996 * 110.85841 * 324.66928 * 16 14 13 38 38 H 1.09004 * 109.88990 * 262.88118 * 17 16 14 39 39 H 1.08996 * 110.03058 * 141.76709 * 17 16 14 40 40 H 1.08002 * 120.83025 * 0.02562 * 20 19 18 41 41 H 1.07992 * 120.40129 * 179.69977 * 21 20 19 42 42 H 1.08001 * 119.08640 * 179.68356 * 23 22 21 43 43 H 1.08996 * 110.37867 * 94.73005 * 25 18 17 44 44 H 1.09006 * 110.37065 * 217.06861 * 25 18 17 45 45 H 1.08994 * 109.47491 * 59.99479 * 26 12 11 46 46 H 1.09004 * 109.47079 * 180.02562 * 26 12 11 47 47 H 1.08994 * 109.47574 * 300.00032 * 27 9 7 48 48 H 1.09004 * 109.46844 * 60.00714 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4404 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6364 -0.0001 11 6 5.5516 -2.6364 -0.0001 12 6 6.0615 -1.9150 -1.2493 13 7 7.5306 -1.9155 -1.2497 14 6 8.0567 -1.7958 -2.6161 15 1 7.4405 -1.1224 -3.2119 16 6 8.1716 -3.1878 -3.2912 17 6 9.2954 -2.9796 -4.3280 18 7 10.0965 -1.8263 -3.8783 19 6 11.4292 -2.1749 -3.7310 20 6 12.1616 -2.6548 -4.8191 21 6 13.4850 -2.9945 -4.6197 22 7 14.0167 -2.8445 -3.4145 23 6 13.2990 -2.3891 -2.4077 24 7 12.0315 -2.0582 -2.5513 25 6 9.5344 -1.3311 -2.6038 26 6 5.5516 -0.4725 -1.2492 27 6 4.0220 -0.4719 -1.2485 28 1 -0.4850 0.8400 0.0004 29 1 3.8746 -0.6807 0.8905 30 1 3.6586 -3.1501 -0.8903 31 1 3.6580 -3.1505 0.8896 32 1 5.9150 -3.6640 0.0002 33 1 5.9150 -2.1226 0.8899 34 1 5.6983 -2.4287 -2.1393 35 1 7.8925 -1.1832 -0.6574 36 1 7.2370 -3.4553 -3.7843 37 1 8.4540 -3.9495 -2.5645 38 1 8.8631 -2.7716 -5.3068 39 1 9.9233 -3.8689 -4.3816 40 1 11.7030 -2.7617 -5.7911 41 1 14.0810 -3.3736 -5.4366 42 1 13.7623 -2.2840 -1.4378 43 1 10.0637 -1.7716 -1.7589 44 1 9.5898 -0.2433 -2.5619 45 1 5.9148 0.0413 -0.3592 46 1 5.9145 0.0413 -2.1394 47 1 3.6591 -0.9852 -2.1390 48 1 3.6587 0.5558 -1.2480 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173334254.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:27 Heat of formation + Delta-G solvation = 57.526318 kcal Electronic energy + Delta-G solvation = -26391.235304 eV Core-core repulsion = 22866.821526 eV Total energy + Delta-G solvation = -3524.413779 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.61424 -39.52158 -38.19347 -35.21775 -33.66999 -32.75590 -31.89469 -30.16130 -30.02711 -29.57349 -27.37436 -24.68469 -24.30751 -23.78371 -22.08234 -21.75962 -20.89857 -20.38201 -19.00426 -18.10517 -17.68829 -16.71894 -16.62072 -15.79668 -15.70543 -15.45088 -14.97447 -14.55883 -14.33752 -14.10110 -13.88122 -13.60761 -13.36813 -13.30556 -13.03283 -12.73420 -12.60473 -12.13461 -12.05080 -11.69217 -11.49493 -11.31621 -11.22898 -11.00541 -10.93467 -10.85269 -10.58663 -10.41685 -10.24768 -10.05877 -9.84044 -9.61676 -9.57034 -9.14922 -8.91909 -8.87224 -8.53621 -8.25194 -6.06201 -4.04576 0.59397 0.72973 2.99132 3.25958 3.37102 3.39460 3.46311 3.76387 3.87182 4.16488 4.21902 4.40220 4.41401 4.55795 4.74142 4.77741 4.99696 5.06623 5.14233 5.17379 5.19233 5.26691 5.31797 5.36538 5.57537 5.62207 5.66793 5.70958 5.83457 5.93111 5.95497 5.99819 6.03202 6.14571 6.20737 6.24900 6.39107 6.51932 6.59771 6.62459 6.72835 6.76133 6.90599 7.00642 7.15540 7.32123 7.41525 7.58818 7.78090 7.80594 8.54993 8.98809 9.57074 11.07315 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.031891 B = 0.002434 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.781345 B =11500.942980 C =11646.745888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.299 1.299 6 H -0.266 1.266 7 C -0.512 4.512 8 H 0.073 0.927 9 C 0.014 3.986 10 C -0.098 4.098 11 C -0.103 4.103 12 C 0.093 3.907 13 N -0.675 5.675 14 C 0.075 3.925 15 H 0.063 0.937 16 C -0.130 4.130 17 C 0.051 3.949 18 N -0.468 5.468 19 C 0.356 3.644 20 C -0.241 4.241 21 C 0.160 3.840 22 N -0.545 5.545 23 C 0.320 3.680 24 N -0.554 5.554 25 C 0.042 3.958 26 C -0.148 4.148 27 C -0.115 4.115 28 H 0.263 0.737 29 H 0.025 0.975 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.342 0.658 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.066 0.934 40 H 0.147 0.853 41 H 0.168 0.832 42 H 0.196 0.804 43 H 0.096 0.904 44 H 0.083 0.917 45 H 0.057 0.943 46 H 0.045 0.955 47 H 0.058 0.942 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.399 -5.890 -9.620 27.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.227 1.227 6 H -0.191 1.191 7 C -0.549 4.549 8 H 0.091 0.909 9 C -0.005 4.005 10 C -0.137 4.137 11 C -0.141 4.141 12 C -0.016 4.016 13 N -0.305 5.305 14 C -0.036 4.036 15 H 0.080 0.920 16 C -0.169 4.169 17 C -0.074 4.074 18 N -0.185 5.185 19 C 0.115 3.885 20 C -0.267 4.267 21 C -0.003 4.003 22 N -0.261 5.261 23 C 0.031 3.969 24 N -0.274 5.274 25 C -0.085 4.085 26 C -0.187 4.187 27 C -0.153 4.153 28 H 0.072 0.928 29 H 0.043 0.957 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.161 0.839 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.109 0.891 39 H 0.084 0.916 40 H 0.165 0.835 41 H 0.185 0.815 42 H 0.212 0.788 43 H 0.115 0.885 44 H 0.101 0.899 45 H 0.075 0.925 46 H 0.064 0.936 47 H 0.077 0.923 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 25.623 -5.979 -9.123 27.848 hybrid contribution -0.207 1.571 -0.702 1.733 sum 25.417 -4.408 -9.825 27.604 Atomic orbital electron populations 1.69902 1.06286 1.26827 1.51170 1.25044 0.94682 0.99043 0.94631 0.86827 0.79890 0.83654 0.77696 1.20826 1.22688 1.19095 1.21107 0.89069 0.94350 1.50421 0.90929 1.19150 0.96343 0.92054 0.92939 1.21439 0.92253 0.98906 1.01061 1.21529 0.96843 0.99328 0.96429 1.21624 0.84983 0.95351 0.99624 1.60678 1.08512 1.52936 1.08422 1.22618 0.94032 0.95746 0.91159 0.91951 1.22819 0.98281 0.98272 0.97484 1.22971 0.94423 0.89868 1.00186 1.60456 0.99010 1.29417 1.29580 1.20299 0.92121 0.87368 0.88741 1.22387 0.96835 1.06745 1.00693 1.23050 0.91889 0.90721 0.94646 1.68443 1.39660 1.17108 1.00912 1.24834 0.85586 0.88374 0.98134 1.68357 1.13250 1.21623 1.24173 1.23227 0.93909 1.00959 0.90392 1.22297 0.99150 0.96862 1.00431 1.21899 0.91668 1.00231 1.01506 0.92767 0.95719 0.92892 0.92563 0.92530 0.92620 0.90694 0.83945 0.90065 0.89936 0.89088 0.91578 0.83524 0.81504 0.78781 0.88544 0.89871 0.92454 0.93587 0.92320 0.93725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.71 13.96 55.43 0.77 -26.93 16 2 C 0.07 1.93 5.45 -17.82 -0.10 1.83 16 3 Si 0.89 22.06 24.37 -169.99 -4.14 17.91 16 4 H -0.28 -6.81 6.87 56.52 0.39 -6.42 16 5 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 6 H -0.27 -6.30 6.53 56.52 0.37 -5.94 16 7 C -0.51 -14.22 9.14 -34.44 -0.31 -14.53 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.77 16 9 C 0.01 0.32 1.69 -91.77 -0.16 0.16 16 10 C -0.10 -1.89 5.14 -26.73 -0.14 -2.02 16 11 C -0.10 -1.62 5.53 -26.73 -0.15 -1.77 16 12 C 0.09 1.35 2.35 -67.71 -0.16 1.19 16 13 N -0.68 -8.16 6.12 -97.50 -0.60 -8.76 16 14 C 0.08 0.81 3.09 -65.57 -0.20 0.61 16 15 H 0.06 0.73 7.24 -51.93 -0.38 0.35 16 16 C -0.13 -1.24 6.49 -24.91 -0.16 -1.40 16 17 C 0.05 0.42 6.50 -2.84 -0.02 0.40 16 18 N -0.47 -4.61 5.20 -169.81 -0.88 -5.49 16 19 C 0.36 3.57 6.15 -154.78 -0.95 2.62 16 20 C -0.24 -1.90 9.15 -39.11 -0.36 -2.26 16 21 C 0.16 1.19 11.29 -17.29 -0.20 1.00 16 22 N -0.55 -5.08 10.43 -14.67 -0.15 -5.24 16 23 C 0.32 2.94 12.28 -92.19 -1.13 1.81 16 24 N -0.55 -5.88 8.33 -13.81 -0.11 -5.99 16 25 C 0.04 0.44 5.85 -2.30 -0.01 0.42 16 26 C -0.15 -2.44 5.16 -26.75 -0.14 -2.57 16 27 C -0.11 -2.39 4.68 -26.76 -0.13 -2.51 16 28 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.02 0.59 7.20 -51.93 -0.37 0.21 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 1.11 7.76 -51.93 -0.40 0.71 16 35 H 0.34 4.00 8.27 -39.30 -0.32 3.67 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.50 7.17 -51.93 -0.37 0.13 16 40 H 0.15 0.84 8.04 -52.49 -0.42 0.42 16 41 H 0.17 0.68 8.06 -52.49 -0.42 0.26 16 42 H 0.20 1.21 8.06 -52.49 -0.42 0.79 16 43 H 0.10 1.10 6.59 -51.93 -0.34 0.76 16 44 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.06 0.95 8.13 -51.93 -0.42 0.52 16 46 H 0.05 0.70 7.45 -51.93 -0.39 0.31 16 47 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 48 H 0.04 1.01 3.27 -51.93 -0.17 0.84 16 LS Contribution 365.67 15.07 5.51 5.51 Total: -1.00 -31.37 365.67 -11.76 -43.13 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -7.84 Total: 2.89 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -4.31 Total: -17.03 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: -0.97 Total: -52.42 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.14 Total: 17.91 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.37 -11.76 -43.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173334254.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.657 kcal (2) G-P(sol) polarization free energy of solvation -31.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds