Wall clock time and date at job start Tue Mar 31 2020 11:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99912 * 2 1 4 4 H 1.48499 * 109.47482 * 270.00224 * 3 2 1 5 5 H 1.48504 * 109.47000 * 29.99995 * 3 2 1 6 6 H 1.48499 * 109.47624 * 149.99786 * 3 2 1 7 7 C 1.37874 * 120.00419 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99823 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00097 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.47113 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47254 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47097 * 300.00079 * 11 10 9 13 13 N 1.46905 * 109.46971 * 180.02562 * 12 11 10 14 14 C 1.46908 * 110.99792 * 155.00141 * 13 12 11 15 15 H 1.09002 * 110.87141 * 37.38976 * 14 13 12 16 16 C 1.55136 * 110.98724 * 273.54503 * 14 13 12 17 17 C 1.54313 * 103.01827 * 206.21945 * 16 14 13 18 18 N 1.47446 * 107.23489 * 22.28029 * 17 16 14 19 19 C 1.38542 * 110.99615 * 123.25730 * 18 17 16 20 20 C 1.39667 * 120.53204 * 59.88413 * 19 18 17 21 21 C 1.38077 * 118.33384 * 180.29503 * 20 19 18 22 22 N 1.32581 * 119.19624 * 359.42070 * 21 20 19 23 23 C 1.31760 * 121.01516 * 0.61039 * 22 21 20 24 24 N 1.31781 * 121.83226 * 359.66722 * 23 22 21 25 25 C 1.47843 * 108.56360 * 0.99712 * 18 17 16 26 26 C 1.53000 * 109.47165 * 60.00343 * 12 11 10 27 27 C 1.52994 * 109.47085 * 299.99452 * 9 7 2 28 28 H 0.96993 * 120.00004 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47512 * 60.00146 * 9 7 2 30 30 H 1.09005 * 109.46966 * 59.99510 * 10 9 7 31 31 H 1.08998 * 109.47127 * 300.00321 * 10 9 7 32 32 H 1.08997 * 109.47360 * 179.97438 * 11 10 9 33 33 H 1.09005 * 109.47468 * 59.99898 * 11 10 9 34 34 H 1.08994 * 109.47341 * 299.99730 * 12 11 10 35 35 H 1.00893 * 110.99639 * 278.95229 * 13 12 11 36 36 H 1.08998 * 110.70580 * 87.83745 * 16 14 13 37 37 H 1.08996 * 110.85841 * 324.66928 * 16 14 13 38 38 H 1.09004 * 109.88990 * 262.88118 * 17 16 14 39 39 H 1.08996 * 110.03058 * 141.76709 * 17 16 14 40 40 H 1.08002 * 120.83025 * 0.02562 * 20 19 18 41 41 H 1.07992 * 120.40129 * 179.69977 * 21 20 19 42 42 H 1.08001 * 119.08640 * 179.68356 * 23 22 21 43 43 H 1.08996 * 110.37867 * 94.73005 * 25 18 17 44 44 H 1.09006 * 110.37065 * 217.06861 * 25 18 17 45 45 H 1.08994 * 109.47491 * 59.99479 * 26 12 11 46 46 H 1.09004 * 109.47079 * 180.02562 * 26 12 11 47 47 H 1.08994 * 109.47574 * 300.00032 * 27 9 7 48 48 H 1.09004 * 109.46844 * 60.00714 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4404 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6364 -0.0001 11 6 5.5516 -2.6364 -0.0001 12 6 6.0615 -1.9150 -1.2493 13 7 7.5306 -1.9155 -1.2497 14 6 8.0567 -1.7958 -2.6161 15 1 7.4405 -1.1224 -3.2119 16 6 8.1716 -3.1878 -3.2912 17 6 9.2954 -2.9796 -4.3280 18 7 10.0965 -1.8263 -3.8783 19 6 11.4292 -2.1749 -3.7310 20 6 12.1616 -2.6548 -4.8191 21 6 13.4850 -2.9945 -4.6197 22 7 14.0167 -2.8445 -3.4145 23 6 13.2990 -2.3891 -2.4077 24 7 12.0315 -2.0582 -2.5513 25 6 9.5344 -1.3311 -2.6038 26 6 5.5516 -0.4725 -1.2492 27 6 4.0220 -0.4719 -1.2485 28 1 -0.4850 0.8400 0.0004 29 1 3.8746 -0.6807 0.8905 30 1 3.6586 -3.1501 -0.8903 31 1 3.6580 -3.1505 0.8896 32 1 5.9150 -3.6640 0.0002 33 1 5.9150 -2.1226 0.8899 34 1 5.6983 -2.4287 -2.1393 35 1 7.8925 -1.1832 -0.6574 36 1 7.2370 -3.4553 -3.7843 37 1 8.4540 -3.9495 -2.5645 38 1 8.8631 -2.7716 -5.3068 39 1 9.9233 -3.8689 -4.3816 40 1 11.7030 -2.7617 -5.7911 41 1 14.0810 -3.3736 -5.4366 42 1 13.7623 -2.2840 -1.4378 43 1 10.0637 -1.7716 -1.7589 44 1 9.5898 -0.2433 -2.5619 45 1 5.9148 0.0413 -0.3592 46 1 5.9145 0.0413 -2.1394 47 1 3.6591 -0.9852 -2.1390 48 1 3.6587 0.5558 -1.2480 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173334254.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:27 Heat of formation + Delta-G solvation = 37.424327 kcal Electronic energy + Delta-G solvation = -26392.106992 eV Core-core repulsion = 22866.821526 eV Total energy + Delta-G solvation = -3525.285466 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.25874 -40.41578 -39.40592 -36.39521 -34.70423 -34.09013 -33.04775 -31.64316 -30.99948 -30.55204 -28.54166 -25.88536 -25.18802 -24.76300 -23.55869 -22.56969 -22.11765 -21.38009 -20.51841 -18.79024 -18.75464 -18.33501 -17.52115 -17.05688 -16.45891 -16.32443 -15.98701 -15.69271 -15.19525 -15.10143 -14.93554 -14.77330 -14.63879 -14.55656 -14.41587 -14.15011 -13.70385 -13.55974 -13.19168 -13.00785 -12.78199 -12.50178 -12.16961 -12.11743 -12.04868 -11.89755 -11.84809 -11.67402 -11.63644 -11.61690 -11.20139 -10.91678 -10.86698 -10.77584 -10.59368 -10.26631 -9.57003 -9.32873 -8.29729 -6.32382 -0.02185 0.12097 1.27881 1.33855 1.44537 2.31637 2.31866 2.82579 3.03719 3.06202 3.32270 3.37591 3.45871 3.70719 3.85376 3.94196 3.99873 4.10054 4.21841 4.24062 4.29032 4.41220 4.47942 4.49385 4.51823 4.64191 4.69374 4.70962 4.73467 4.76249 4.82261 4.87906 4.90615 5.00519 5.03430 5.14036 5.20334 5.28007 5.30221 5.37670 5.39939 5.43792 5.63093 5.72185 5.83214 5.92097 6.09728 6.15630 6.34486 6.45643 6.76019 7.15557 7.33030 8.87387 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.031891 B = 0.002434 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.781345 B =11500.942980 C =11646.745888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.007 3.993 3 Si 0.952 3.048 4 H -0.269 1.269 5 H -0.303 1.303 6 H -0.246 1.246 7 C -0.517 4.517 8 H 0.031 0.969 9 C 0.013 3.987 10 C -0.094 4.094 11 C -0.093 4.093 12 C 0.104 3.896 13 N -0.670 5.670 14 C 0.077 3.923 15 H 0.059 0.941 16 C -0.126 4.126 17 C 0.055 3.945 18 N -0.472 5.472 19 C 0.334 3.666 20 C -0.238 4.238 21 C 0.158 3.842 22 N -0.561 5.561 23 C 0.309 3.691 24 N -0.575 5.575 25 C 0.050 3.950 26 C -0.140 4.140 27 C -0.114 4.114 28 H 0.264 0.736 29 H 0.019 0.981 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.347 0.653 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.107 0.893 39 H 0.073 0.927 40 H 0.169 0.831 41 H 0.201 0.799 42 H 0.214 0.786 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.061 0.939 46 H 0.064 0.936 47 H 0.052 0.948 48 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.595 -5.705 -10.978 31.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.189 4.189 3 Si 0.780 3.220 4 H -0.195 1.195 5 H -0.231 1.231 6 H -0.170 1.170 7 C -0.555 4.555 8 H 0.049 0.951 9 C -0.006 4.006 10 C -0.132 4.132 11 C -0.131 4.131 12 C -0.005 4.005 13 N -0.300 5.300 14 C -0.034 4.034 15 H 0.077 0.923 16 C -0.165 4.165 17 C -0.071 4.071 18 N -0.189 5.189 19 C 0.094 3.906 20 C -0.263 4.263 21 C -0.004 4.004 22 N -0.278 5.278 23 C 0.020 3.980 24 N -0.296 5.296 25 C -0.077 4.077 26 C -0.179 4.179 27 C -0.152 4.152 28 H 0.073 0.927 29 H 0.038 0.962 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.166 0.834 36 H 0.104 0.896 37 H 0.091 0.909 38 H 0.125 0.875 39 H 0.091 0.909 40 H 0.187 0.813 41 H 0.217 0.783 42 H 0.230 0.770 43 H 0.104 0.896 44 H 0.097 0.903 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.071 0.929 48 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 28.853 -5.813 -10.488 31.246 hybrid contribution -1.226 1.398 -0.286 1.882 sum 27.627 -4.415 -10.773 29.980 Atomic orbital electron populations 1.70059 1.08230 1.27854 1.53247 1.25922 0.95424 1.03071 0.94501 0.85783 0.79120 0.78677 0.78422 1.19545 1.23071 1.16974 1.21494 0.92029 0.92720 1.49251 0.95051 1.19127 0.92911 0.94725 0.93836 1.21343 0.95110 0.96341 1.00450 1.21404 0.93707 1.00675 0.97327 1.21411 0.86402 0.93847 0.98876 1.60622 1.06700 1.53215 1.09449 1.22620 0.94027 0.96508 0.90228 0.92307 1.22779 0.99040 0.97149 0.97561 1.23015 0.93923 0.89799 1.00322 1.60544 0.99238 1.30095 1.29037 1.20584 0.92336 0.88276 0.89415 1.22634 0.96869 1.05782 1.00988 1.23634 0.92157 0.89776 0.94851 1.68500 1.40070 1.17507 1.01703 1.25248 0.85398 0.88240 0.99078 1.68347 1.13931 1.22419 1.24896 1.23058 0.93450 1.00603 0.90606 1.22231 0.95533 0.98553 1.01585 1.21763 0.95011 0.98607 0.99783 0.92730 0.96243 0.93391 0.93492 0.90925 0.92292 0.90648 0.83415 0.89596 0.90891 0.87528 0.90878 0.81348 0.78269 0.76982 0.89640 0.90288 0.92027 0.91718 0.92903 0.95264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.46 13.96 21.45 0.30 -60.16 16 2 C 0.01 0.42 5.45 84.65 0.46 0.88 16 3 Si 0.95 45.67 24.37 68.60 1.67 47.34 16 4 H -0.27 -12.30 6.87 99.48 0.68 -11.62 16 5 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 6 H -0.25 -10.87 6.53 99.48 0.65 -10.22 16 7 C -0.52 -29.60 9.14 25.60 0.23 -29.37 16 8 H 0.03 1.99 7.99 -2.91 -0.02 1.96 16 9 C 0.01 0.58 1.69 -11.54 -0.02 0.56 16 10 C -0.09 -3.57 5.14 30.59 0.16 -3.41 16 11 C -0.09 -2.72 5.53 30.59 0.17 -2.55 16 12 C 0.10 2.74 2.35 44.91 0.11 2.85 16 13 N -0.67 -14.38 6.12 -462.40 -2.83 -17.21 16 14 C 0.08 1.47 3.09 46.30 0.14 1.61 16 15 H 0.06 1.20 7.24 -2.39 -0.02 1.19 16 16 C -0.13 -2.10 6.49 31.77 0.21 -1.90 16 17 C 0.05 0.76 6.50 86.64 0.56 1.32 16 18 N -0.47 -8.28 5.20 -691.16 -3.60 -11.88 16 19 C 0.33 6.07 6.15 133.18 0.82 6.89 16 20 C -0.24 -3.12 9.15 22.58 0.21 -2.91 16 21 C 0.16 1.95 11.29 84.54 0.95 2.90 16 22 N -0.56 -9.45 10.43 -200.33 -2.09 -11.54 16 23 C 0.31 5.28 12.28 180.90 2.22 7.50 16 24 N -0.58 -11.47 8.33 -197.60 -1.65 -13.11 16 25 C 0.05 0.95 5.85 86.77 0.51 1.46 16 26 C -0.14 -4.20 5.16 30.58 0.16 -4.04 16 27 C -0.11 -4.55 4.68 30.58 0.14 -4.41 16 28 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 29 H 0.02 0.90 7.20 -2.39 -0.02 0.89 16 30 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 31 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.06 1.70 8.14 -2.38 -0.02 1.69 16 34 H 0.08 2.02 7.76 -2.39 -0.02 2.00 16 35 H 0.35 7.11 8.27 -89.70 -0.74 6.37 16 36 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 39 H 0.07 0.92 7.17 -2.39 -0.02 0.90 16 40 H 0.17 1.36 8.04 -2.91 -0.02 1.34 16 41 H 0.20 0.94 8.06 -2.91 -0.02 0.92 16 42 H 0.21 2.42 8.06 -2.91 -0.02 2.40 16 43 H 0.09 1.84 6.59 -2.39 -0.02 1.82 16 44 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 45 H 0.06 1.82 8.13 -2.39 -0.02 1.80 16 46 H 0.06 1.73 7.45 -2.39 -0.02 1.72 16 47 H 0.05 2.14 8.14 -2.39 -0.02 2.13 16 48 H 0.03 1.26 3.27 -2.38 -0.01 1.25 16 Total: -1.00 -69.66 365.67 -1.03 -70.69 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 0.13 Total: 18.48 kcal Atomic # 6 Polarization: -29.65 SS G_CDS: 7.03 Total: -22.62 kcal Atomic # 7 Polarization: -104.04 SS G_CDS: -9.86 Total: -113.90 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.67 Total: 47.34 kcal Total: -69.66 -1.03 -70.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173334254.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.119 kcal (2) G-P(sol) polarization free energy of solvation -69.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds