Wall clock time and date at job start Tue Mar 31 2020 11:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99562 * 2 1 4 4 H 1.48492 * 109.47541 * 269.99812 * 3 2 1 5 5 H 1.48501 * 109.47136 * 29.99985 * 3 2 1 6 6 H 1.48502 * 109.46813 * 149.99484 * 3 2 1 7 7 C 1.37871 * 120.00335 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00012 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00011 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47201 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47216 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.46967 * 299.99628 * 11 10 9 13 13 N 1.46901 * 109.47294 * 180.02562 * 12 11 10 14 14 C 1.46899 * 111.00311 * 155.00080 * 13 12 11 15 15 H 1.08998 * 110.90316 * 31.13687 * 14 13 12 16 16 C 1.55422 * 111.10449 * 267.17238 * 14 13 12 17 17 C 1.54321 * 103.04810 * 206.29649 * 16 14 13 18 18 N 1.47448 * 107.23159 * 22.28093 * 17 16 14 19 19 C 1.38992 * 110.99816 * 123.25856 * 18 17 16 20 20 C 1.39340 * 120.09693 * 59.16019 * 19 18 17 21 21 N 1.31918 * 119.89373 * 179.97438 * 20 19 18 22 22 C 1.32275 * 120.08534 * 0.02562 * 21 20 19 23 23 C 1.38156 * 120.19250 * 359.97438 * 22 21 20 24 24 N 1.32254 * 120.11205 * 359.78850 * 23 22 21 25 25 C 1.47846 * 108.56553 * 0.99350 * 18 17 16 26 26 C 1.53000 * 109.47172 * 60.00325 * 12 11 10 27 27 C 1.52998 * 109.46900 * 299.99437 * 9 7 2 28 28 H 0.97000 * 119.99975 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47407 * 59.99888 * 9 7 2 30 30 H 1.09005 * 109.47248 * 59.99602 * 10 9 7 31 31 H 1.09006 * 109.46660 * 299.99559 * 10 9 7 32 32 H 1.09002 * 109.46659 * 180.02562 * 11 10 9 33 33 H 1.08997 * 109.47325 * 60.00071 * 11 10 9 34 34 H 1.09005 * 109.47190 * 300.00119 * 12 11 10 35 35 H 1.00902 * 110.99349 * 278.95351 * 13 12 11 36 36 H 1.09004 * 110.69757 * 87.90523 * 16 14 13 37 37 H 1.09005 * 110.84788 * 324.75404 * 16 14 13 38 38 H 1.08999 * 109.88748 * 262.87827 * 17 16 14 39 39 H 1.08997 * 110.02694 * 141.76299 * 17 16 14 40 40 H 1.08005 * 120.05420 * 359.95289 * 20 19 18 41 41 H 1.08000 * 119.90771 * 179.97438 * 22 21 20 42 42 H 1.08000 * 119.94680 * 180.02562 * 23 22 21 43 43 H 1.09002 * 110.37464 * 94.73346 * 25 18 17 44 44 H 1.08999 * 110.37318 * 216.96123 * 25 18 17 45 45 H 1.08991 * 109.47293 * 59.99736 * 26 12 11 46 46 H 1.08999 * 109.47250 * 180.02562 * 26 12 11 47 47 H 1.09005 * 109.47190 * 300.00178 * 27 9 7 48 48 H 1.08999 * 109.47296 * 60.00093 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7002 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6364 -0.0001 11 6 5.5517 -2.6363 -0.0001 12 6 6.0616 -1.9150 -1.2494 13 7 7.5306 -1.9154 -1.2498 14 6 8.0567 -1.7958 -2.6161 15 1 7.3824 -1.2121 -3.2428 16 6 8.3235 -3.1951 -3.2376 17 6 9.4325 -2.9111 -4.2724 18 7 10.1051 -1.6651 -3.8610 19 6 11.4692 -1.8690 -3.6887 20 6 12.2472 -2.3247 -4.7510 21 7 13.5416 -2.5163 -4.5831 22 6 14.1005 -2.2769 -3.4084 23 6 13.3324 -1.8249 -2.3527 24 7 12.0349 -1.6257 -2.5137 25 6 9.4794 -1.1830 -2.6112 26 6 5.5515 -0.4725 -1.2493 27 6 4.0220 -0.4719 -1.2486 28 1 -0.4850 0.8400 -0.0004 29 1 3.8746 -0.6806 0.8905 30 1 3.6587 -3.1501 -0.8903 31 1 3.6581 -3.1503 0.8898 32 1 5.9150 -3.6640 -0.0007 33 1 5.9150 -2.1225 0.8899 34 1 5.6982 -2.4288 -2.1394 35 1 7.8924 -1.1830 -0.6575 36 1 7.4275 -3.5762 -3.7277 37 1 8.6740 -3.8958 -2.4796 38 1 8.9930 -2.7859 -5.2620 39 1 10.1492 -3.7322 -4.2863 40 1 11.7913 -2.5211 -5.7102 41 1 15.1604 -2.4351 -3.2741 42 1 13.7929 -1.6303 -1.3954 43 1 10.0410 -1.5344 -1.7456 44 1 9.4238 -0.0945 -2.6101 45 1 5.9148 0.0413 -0.3594 46 1 5.9144 0.0412 -2.1395 47 1 3.6589 -0.9852 -2.1390 48 1 3.6586 0.5558 -1.2481 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173334473.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:43 Heat of formation + Delta-G solvation = 58.096578 kcal Electronic energy + Delta-G solvation = -26389.685329 eV Core-core repulsion = 22865.296279 eV Total energy + Delta-G solvation = -3524.389050 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.69294 -39.48562 -38.16648 -35.17520 -34.35515 -32.70834 -31.70529 -30.15800 -29.62206 -29.55814 -27.38557 -24.88628 -24.27881 -23.77456 -22.07793 -21.70842 -20.87275 -20.43707 -18.99771 -17.92045 -17.67945 -16.94031 -16.69773 -16.61168 -15.59537 -15.31565 -14.91905 -14.53186 -14.29966 -13.92644 -13.69263 -13.55955 -13.29741 -13.07754 -13.03011 -12.77247 -12.62161 -12.13851 -12.03739 -11.96627 -11.69176 -11.52751 -11.42726 -11.22969 -10.91562 -10.84131 -10.58576 -10.41776 -10.24384 -10.05515 -9.83639 -9.56537 -9.49256 -9.14190 -8.90291 -8.65599 -8.53135 -8.24552 -6.05902 -4.04278 0.42878 0.77465 2.97647 3.26315 3.36446 3.37296 3.39685 3.78894 3.93872 4.10304 4.24195 4.33830 4.41683 4.43404 4.75093 4.81475 4.87509 5.01230 5.11270 5.15074 5.18735 5.27265 5.31572 5.37071 5.57391 5.61624 5.66833 5.75613 5.83839 5.85188 5.94704 6.01790 6.07195 6.15216 6.21174 6.25323 6.39474 6.52335 6.55954 6.62488 6.74284 6.91034 6.97938 7.00947 7.16378 7.32425 7.41738 7.43661 7.59126 7.80894 8.55289 8.99106 9.57367 11.07584 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.030613 B = 0.002454 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.418021 B =11405.116456 C =11615.689911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.299 1.299 6 H -0.266 1.266 7 C -0.511 4.511 8 H 0.073 0.927 9 C 0.014 3.986 10 C -0.098 4.098 11 C -0.103 4.103 12 C 0.093 3.907 13 N -0.675 5.675 14 C 0.076 3.924 15 H 0.066 0.934 16 C -0.129 4.129 17 C 0.047 3.953 18 N -0.463 5.463 19 C 0.266 3.734 20 C 0.041 3.959 21 N -0.420 5.420 22 C 0.009 3.991 23 C 0.081 3.919 24 N -0.476 5.476 25 C 0.040 3.960 26 C -0.148 4.148 27 C -0.115 4.115 28 H 0.262 0.738 29 H 0.025 0.975 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.342 0.658 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.065 0.935 40 H 0.169 0.831 41 H 0.168 0.832 42 H 0.170 0.830 43 H 0.092 0.908 44 H 0.083 0.917 45 H 0.056 0.944 46 H 0.046 0.954 47 H 0.058 0.942 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.514 -5.076 -7.557 28.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.227 1.227 6 H -0.191 1.191 7 C -0.549 4.549 8 H 0.091 0.909 9 C -0.005 4.005 10 C -0.137 4.137 11 C -0.141 4.141 12 C -0.016 4.016 13 N -0.306 5.306 14 C -0.035 4.035 15 H 0.084 0.916 16 C -0.168 4.168 17 C -0.078 4.078 18 N -0.180 5.180 19 C 0.030 3.970 20 C -0.124 4.124 21 N -0.134 5.134 22 C -0.150 4.150 23 C -0.079 4.079 24 N -0.195 5.195 25 C -0.087 4.087 26 C -0.187 4.187 27 C -0.153 4.153 28 H 0.072 0.928 29 H 0.043 0.957 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.160 0.840 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.110 0.890 39 H 0.083 0.917 40 H 0.187 0.813 41 H 0.185 0.815 42 H 0.187 0.813 43 H 0.110 0.890 44 H 0.101 0.899 45 H 0.075 0.925 46 H 0.064 0.936 47 H 0.077 0.923 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 26.305 -5.286 -7.939 27.981 hybrid contribution 0.282 1.675 0.234 1.715 sum 26.587 -3.611 -7.705 27.916 Atomic orbital electron populations 1.69907 1.06282 1.26822 1.51178 1.25046 0.94683 0.99042 0.94633 0.86826 0.79880 0.83653 0.77704 1.20814 1.22696 1.19103 1.21106 0.89071 0.94351 1.50410 0.90926 1.19148 0.96345 0.92053 0.92938 1.21441 0.92248 0.98908 1.01065 1.21529 0.96855 0.99322 0.96420 1.21643 0.84976 0.95350 0.99629 1.60668 1.08532 1.52896 1.08456 1.22684 0.94323 0.95251 0.91269 0.91618 1.22864 0.98209 0.98032 0.97692 1.23021 0.96207 0.88065 1.00539 1.60672 0.98740 1.27373 1.31245 1.21077 0.92726 0.93031 0.90125 1.23289 0.89853 0.99783 0.99482 1.68358 1.10893 1.10631 1.23530 1.23563 1.01989 0.99762 0.89707 1.23631 0.89363 0.94308 1.00608 1.68347 1.12536 1.16703 1.21964 1.23256 0.93887 1.00579 0.90974 1.22299 0.99151 0.96851 1.00433 1.21901 0.91670 1.00232 1.01510 0.92770 0.95732 0.92874 0.92570 0.92530 0.92639 0.90668 0.83963 0.90102 0.90076 0.88969 0.91685 0.81348 0.81464 0.81329 0.88966 0.89878 0.92479 0.93565 0.92303 0.93725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 2 C 0.07 1.93 5.45 -17.82 -0.10 1.83 16 3 Si 0.89 22.08 24.37 -169.99 -4.14 17.94 16 4 H -0.28 -6.82 6.87 56.52 0.39 -6.43 16 5 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 6 H -0.27 -6.31 6.53 56.52 0.37 -5.94 16 7 C -0.51 -14.23 9.14 -34.44 -0.31 -14.54 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 9 C 0.01 0.32 1.69 -91.77 -0.16 0.16 16 10 C -0.10 -1.89 5.14 -26.73 -0.14 -2.03 16 11 C -0.10 -1.62 5.53 -26.73 -0.15 -1.77 16 12 C 0.09 1.35 2.34 -67.71 -0.16 1.19 16 13 N -0.68 -8.19 6.17 -97.35 -0.60 -8.79 16 14 C 0.08 0.82 3.13 -65.42 -0.20 0.61 16 15 H 0.07 0.77 7.25 -51.93 -0.38 0.40 16 16 C -0.13 -1.23 6.65 -24.75 -0.16 -1.39 16 17 C 0.05 0.39 6.45 -2.83 -0.02 0.37 16 18 N -0.46 -4.58 5.21 -169.85 -0.88 -5.47 16 19 C 0.27 2.70 6.16 -154.74 -0.95 1.74 16 20 C 0.04 0.38 10.17 -17.10 -0.17 0.20 16 21 N -0.42 -3.99 10.49 -12.88 -0.14 -4.12 16 22 C 0.01 0.06 11.21 -17.39 -0.19 -0.13 16 23 C 0.08 0.62 11.21 -17.40 -0.20 0.43 16 24 N -0.48 -4.90 8.36 -12.24 -0.10 -5.00 16 25 C 0.04 0.42 5.76 -2.30 -0.01 0.41 16 26 C -0.15 -2.44 5.16 -26.75 -0.14 -2.58 16 27 C -0.12 -2.40 4.68 -26.75 -0.13 -2.52 16 28 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.02 0.58 7.20 -51.93 -0.37 0.21 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.08 1.12 7.86 -51.93 -0.41 0.71 16 35 H 0.34 4.01 8.18 -39.29 -0.32 3.69 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.50 7.14 -51.93 -0.37 0.13 16 40 H 0.17 1.21 7.98 -52.48 -0.42 0.79 16 41 H 0.17 0.69 8.06 -52.49 -0.42 0.27 16 42 H 0.17 0.75 8.06 -52.49 -0.42 0.33 16 43 H 0.09 1.05 6.59 -51.93 -0.34 0.71 16 44 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.06 0.94 8.13 -51.93 -0.42 0.52 16 46 H 0.05 0.70 7.53 -51.93 -0.39 0.31 16 47 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 48 H 0.04 1.01 3.27 -51.93 -0.17 0.84 16 LS Contribution 365.76 15.07 5.51 5.51 Total: -1.00 -31.50 365.76 -10.62 -42.12 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -7.85 Total: 2.78 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -3.19 Total: -18.00 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: -0.95 Total: -50.34 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.14 Total: 17.94 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.50 -10.62 -42.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173334473.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.213 kcal (2) G-P(sol) polarization free energy of solvation -31.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds