Wall clock time and date at job start Tue Mar 31 2020 11:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99562 * 2 1 4 4 H 1.48492 * 109.47541 * 269.99812 * 3 2 1 5 5 H 1.48501 * 109.47136 * 29.99985 * 3 2 1 6 6 H 1.48502 * 109.46813 * 149.99484 * 3 2 1 7 7 C 1.37871 * 120.00335 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00012 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00011 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47201 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47216 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.46967 * 299.99628 * 11 10 9 13 13 N 1.46901 * 109.47294 * 180.02562 * 12 11 10 14 14 C 1.46899 * 111.00311 * 155.00080 * 13 12 11 15 15 H 1.08998 * 110.90316 * 31.13687 * 14 13 12 16 16 C 1.55422 * 111.10449 * 267.17238 * 14 13 12 17 17 C 1.54321 * 103.04810 * 206.29649 * 16 14 13 18 18 N 1.47448 * 107.23159 * 22.28093 * 17 16 14 19 19 C 1.38992 * 110.99816 * 123.25856 * 18 17 16 20 20 C 1.39340 * 120.09693 * 59.16019 * 19 18 17 21 21 N 1.31918 * 119.89373 * 179.97438 * 20 19 18 22 22 C 1.32275 * 120.08534 * 0.02562 * 21 20 19 23 23 C 1.38156 * 120.19250 * 359.97438 * 22 21 20 24 24 N 1.32254 * 120.11205 * 359.78850 * 23 22 21 25 25 C 1.47846 * 108.56553 * 0.99350 * 18 17 16 26 26 C 1.53000 * 109.47172 * 60.00325 * 12 11 10 27 27 C 1.52998 * 109.46900 * 299.99437 * 9 7 2 28 28 H 0.97000 * 119.99975 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47407 * 59.99888 * 9 7 2 30 30 H 1.09005 * 109.47248 * 59.99602 * 10 9 7 31 31 H 1.09006 * 109.46660 * 299.99559 * 10 9 7 32 32 H 1.09002 * 109.46659 * 180.02562 * 11 10 9 33 33 H 1.08997 * 109.47325 * 60.00071 * 11 10 9 34 34 H 1.09005 * 109.47190 * 300.00119 * 12 11 10 35 35 H 1.00902 * 110.99349 * 278.95351 * 13 12 11 36 36 H 1.09004 * 110.69757 * 87.90523 * 16 14 13 37 37 H 1.09005 * 110.84788 * 324.75404 * 16 14 13 38 38 H 1.08999 * 109.88748 * 262.87827 * 17 16 14 39 39 H 1.08997 * 110.02694 * 141.76299 * 17 16 14 40 40 H 1.08005 * 120.05420 * 359.95289 * 20 19 18 41 41 H 1.08000 * 119.90771 * 179.97438 * 22 21 20 42 42 H 1.08000 * 119.94680 * 180.02562 * 23 22 21 43 43 H 1.09002 * 110.37464 * 94.73346 * 25 18 17 44 44 H 1.08999 * 110.37318 * 216.96123 * 25 18 17 45 45 H 1.08991 * 109.47293 * 59.99736 * 26 12 11 46 46 H 1.08999 * 109.47250 * 180.02562 * 26 12 11 47 47 H 1.09005 * 109.47190 * 300.00178 * 27 9 7 48 48 H 1.08999 * 109.47296 * 60.00093 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7002 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6364 -0.0001 11 6 5.5517 -2.6363 -0.0001 12 6 6.0616 -1.9150 -1.2494 13 7 7.5306 -1.9154 -1.2498 14 6 8.0567 -1.7958 -2.6161 15 1 7.3824 -1.2121 -3.2428 16 6 8.3235 -3.1951 -3.2376 17 6 9.4325 -2.9111 -4.2724 18 7 10.1051 -1.6651 -3.8610 19 6 11.4692 -1.8690 -3.6887 20 6 12.2472 -2.3247 -4.7510 21 7 13.5416 -2.5163 -4.5831 22 6 14.1005 -2.2769 -3.4084 23 6 13.3324 -1.8249 -2.3527 24 7 12.0349 -1.6257 -2.5137 25 6 9.4794 -1.1830 -2.6112 26 6 5.5515 -0.4725 -1.2493 27 6 4.0220 -0.4719 -1.2486 28 1 -0.4850 0.8400 -0.0004 29 1 3.8746 -0.6806 0.8905 30 1 3.6587 -3.1501 -0.8903 31 1 3.6581 -3.1503 0.8898 32 1 5.9150 -3.6640 -0.0007 33 1 5.9150 -2.1225 0.8899 34 1 5.6982 -2.4288 -2.1394 35 1 7.8924 -1.1830 -0.6575 36 1 7.4275 -3.5762 -3.7277 37 1 8.6740 -3.8958 -2.4796 38 1 8.9930 -2.7859 -5.2620 39 1 10.1492 -3.7322 -4.2863 40 1 11.7913 -2.5211 -5.7102 41 1 15.1604 -2.4351 -3.2741 42 1 13.7929 -1.6303 -1.3954 43 1 10.0410 -1.5344 -1.7456 44 1 9.4238 -0.0945 -2.6101 45 1 5.9148 0.0413 -0.3594 46 1 5.9144 0.0412 -2.1395 47 1 3.6589 -0.9852 -2.1390 48 1 3.6586 0.5558 -1.2481 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173334473.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:42 Heat of formation + Delta-G solvation = 36.155745 kcal Electronic energy + Delta-G solvation = -26390.636755 eV Core-core repulsion = 22865.296279 eV Total energy + Delta-G solvation = -3525.340476 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.32937 -40.39473 -39.37219 -36.34186 -35.12360 -34.38022 -32.85270 -31.63790 -30.78045 -30.30242 -28.52577 -25.97241 -25.27017 -24.77506 -23.55577 -22.52854 -22.08288 -21.44546 -20.50765 -18.75933 -18.59665 -18.33355 -17.56862 -17.46990 -17.01638 -16.25140 -15.95435 -15.55774 -15.15290 -15.09468 -14.93190 -14.65858 -14.56583 -14.43901 -14.41393 -13.78798 -13.68570 -13.55158 -13.18671 -12.99722 -12.79963 -12.63234 -12.49211 -12.18429 -12.17200 -12.10661 -11.94276 -11.83355 -11.64944 -11.63179 -11.19672 -10.91421 -10.88700 -10.77349 -10.58972 -10.10835 -9.35646 -9.27991 -8.29626 -6.32291 -0.16476 0.14522 1.28101 1.33827 1.44597 2.31610 2.31751 2.74261 3.05260 3.07200 3.34792 3.43365 3.43850 3.67311 3.73812 3.86531 4.00198 4.12043 4.22818 4.26060 4.28287 4.31233 4.43700 4.49746 4.52085 4.58376 4.66616 4.71061 4.72697 4.76645 4.82859 4.88012 4.89842 5.01933 5.05926 5.14859 5.20148 5.23573 5.31100 5.38131 5.42602 5.43910 5.63296 5.72314 5.83382 5.88762 6.12736 6.34601 6.37514 6.45821 6.76122 6.82803 7.33119 8.87467 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.030613 B = 0.002454 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.418021 B =11405.116456 C =11615.689911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.007 3.993 3 Si 0.953 3.047 4 H -0.269 1.269 5 H -0.302 1.302 6 H -0.246 1.246 7 C -0.517 4.517 8 H 0.031 0.969 9 C 0.013 3.987 10 C -0.094 4.094 11 C -0.093 4.093 12 C 0.104 3.896 13 N -0.669 5.669 14 C 0.077 3.923 15 H 0.061 0.939 16 C -0.125 4.125 17 C 0.051 3.949 18 N -0.468 5.468 19 C 0.248 3.752 20 C 0.035 3.965 21 N -0.442 5.442 22 C 0.013 3.987 23 C 0.078 3.922 24 N -0.499 5.499 25 C 0.049 3.951 26 C -0.140 4.140 27 C -0.114 4.114 28 H 0.264 0.736 29 H 0.020 0.980 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.347 0.653 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.107 0.893 39 H 0.070 0.930 40 H 0.182 0.818 41 H 0.200 0.800 42 H 0.200 0.800 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.061 0.939 46 H 0.064 0.936 47 H 0.052 0.948 48 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.091 -4.728 -8.070 31.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.189 4.189 3 Si 0.780 3.220 4 H -0.196 1.196 5 H -0.231 1.231 6 H -0.169 1.169 7 C -0.555 4.555 8 H 0.049 0.951 9 C -0.006 4.006 10 C -0.133 4.133 11 C -0.131 4.131 12 C -0.006 4.006 13 N -0.299 5.299 14 C -0.034 4.034 15 H 0.079 0.921 16 C -0.164 4.164 17 C -0.075 4.075 18 N -0.186 5.186 19 C 0.014 3.986 20 C -0.130 4.130 21 N -0.156 5.156 22 C -0.146 4.146 23 C -0.082 4.082 24 N -0.219 5.219 25 C -0.079 4.079 26 C -0.179 4.179 27 C -0.152 4.152 28 H 0.073 0.927 29 H 0.038 0.962 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.166 0.834 36 H 0.104 0.896 37 H 0.091 0.909 38 H 0.125 0.875 39 H 0.088 0.912 40 H 0.199 0.801 41 H 0.217 0.783 42 H 0.216 0.784 43 H 0.102 0.898 44 H 0.096 0.904 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.071 0.929 48 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 29.907 -4.958 -8.467 31.475 hybrid contribution -0.811 1.460 0.429 1.725 sum 29.096 -3.498 -8.037 30.387 Atomic orbital electron populations 1.70065 1.08229 1.27848 1.53260 1.25925 0.95428 1.03080 0.94504 0.85780 0.79128 0.78669 0.78413 1.19579 1.23062 1.16941 1.21494 0.92037 0.92718 1.49236 0.95057 1.19125 0.92905 0.94729 0.93830 1.21346 0.95128 0.96337 1.00447 1.21403 0.93696 1.00685 0.97306 1.21432 0.86419 0.93846 0.98881 1.60615 1.06692 1.53165 1.09441 1.22683 0.94305 0.96080 0.90316 0.92072 1.22818 0.98812 0.97006 0.97740 1.23057 0.95855 0.87810 1.00742 1.60730 0.98926 1.28109 1.30809 1.21181 0.92825 0.94054 0.90562 1.23472 0.89914 0.99727 0.99847 1.68402 1.11096 1.11434 1.24697 1.24123 1.03418 0.98189 0.88900 1.24175 0.88631 0.93449 1.01988 1.68339 1.13923 1.17333 1.22335 1.23090 0.93441 1.00185 0.91139 1.22233 0.95524 0.98544 1.01587 1.21767 0.95025 0.98607 0.99787 0.92736 0.96213 0.93419 0.93468 0.90895 0.92256 0.90696 0.83417 0.89631 0.90925 0.87525 0.91161 0.80107 0.78332 0.78373 0.89849 0.90363 0.92002 0.91742 0.92937 0.95264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.54 13.96 21.45 0.30 -60.24 16 2 C 0.01 0.41 5.45 84.65 0.46 0.87 16 3 Si 0.95 45.73 24.37 68.60 1.67 47.40 16 4 H -0.27 -12.35 6.87 99.48 0.68 -11.67 16 5 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 6 H -0.25 -10.86 6.53 99.48 0.65 -10.21 16 7 C -0.52 -29.63 9.14 25.60 0.23 -29.40 16 8 H 0.03 1.99 7.99 -2.91 -0.02 1.96 16 9 C 0.01 0.58 1.69 -11.54 -0.02 0.56 16 10 C -0.09 -3.58 5.14 30.59 0.16 -3.42 16 11 C -0.09 -2.71 5.53 30.59 0.17 -2.54 16 12 C 0.10 2.74 2.34 44.91 0.10 2.85 16 13 N -0.67 -14.37 6.17 -461.91 -2.85 -17.22 16 14 C 0.08 1.48 3.13 46.40 0.15 1.62 16 15 H 0.06 1.27 7.25 -2.39 -0.02 1.26 16 16 C -0.12 -2.10 6.65 31.88 0.21 -1.89 16 17 C 0.05 0.73 6.45 86.65 0.56 1.29 16 18 N -0.47 -8.45 5.21 -691.29 -3.60 -12.05 16 19 C 0.25 4.65 6.16 133.04 0.82 5.46 16 20 C 0.03 0.58 10.17 84.95 0.86 1.45 16 21 N -0.44 -7.57 10.49 -194.67 -2.04 -9.61 16 22 C 0.01 0.16 11.21 84.61 0.95 1.10 16 23 C 0.08 1.00 11.21 84.61 0.95 1.95 16 24 N -0.50 -9.40 8.36 -192.64 -1.61 -11.01 16 25 C 0.05 0.93 5.76 86.77 0.50 1.43 16 26 C -0.14 -4.21 5.16 30.58 0.16 -4.05 16 27 C -0.11 -4.57 4.68 30.58 0.14 -4.43 16 28 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 29 H 0.02 0.92 7.20 -2.39 -0.02 0.90 16 30 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 31 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 32 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.07 2.03 7.86 -2.38 -0.02 2.01 16 35 H 0.35 7.09 8.18 -89.69 -0.73 6.36 16 36 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 38 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.07 0.95 7.14 -2.39 -0.02 0.93 16 40 H 0.18 2.32 7.98 -2.91 -0.02 2.30 16 41 H 0.20 0.96 8.06 -2.91 -0.02 0.93 16 42 H 0.20 1.13 8.06 -2.91 -0.02 1.11 16 43 H 0.08 1.76 6.59 -2.39 -0.02 1.74 16 44 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.06 1.83 8.13 -2.39 -0.02 1.81 16 46 H 0.06 1.74 7.53 -2.39 -0.02 1.72 16 47 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 48 H 0.03 1.26 3.27 -2.39 -0.01 1.25 16 Total: -1.00 -69.99 365.76 -1.59 -71.58 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 0.14 Total: 18.28 kcal Atomic # 6 Polarization: -33.54 SS G_CDS: 6.40 Total: -27.13 kcal Atomic # 7 Polarization: -100.32 SS G_CDS: -9.80 Total: -110.13 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.67 Total: 47.40 kcal Total: -69.99 -1.59 -71.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173334473.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.737 kcal (2) G-P(sol) polarization free energy of solvation -69.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds