Wall clock time and date at job start Tue Mar 31 2020 10:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 119.99747 * 2 1 4 4 H 1.48501 * 109.47090 * 274.98989 * 3 2 1 5 5 H 1.48498 * 109.47372 * 34.99169 * 3 2 1 6 6 H 1.48504 * 109.47599 * 154.99387 * 3 2 1 7 7 C 1.37878 * 120.00440 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00297 * 189.57281 * 7 2 1 9 9 C 1.50705 * 119.99986 * 9.57339 * 7 2 1 10 10 C 1.52993 * 109.47057 * 185.44538 * 9 7 2 11 11 C 1.53007 * 109.46751 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47211 * 60.00105 * 11 10 9 13 13 N 1.46898 * 109.47283 * 59.99742 * 12 11 10 14 14 C 1.46905 * 111.00249 * 154.99899 * 13 12 11 15 15 C 1.52993 * 109.47223 * 179.97438 * 14 13 12 16 16 N 1.46905 * 109.47223 * 179.97438 * 15 14 13 17 17 C 1.46844 * 110.99965 * 294.21544 * 16 15 14 18 18 C 1.53039 * 109.52313 * 174.15656 * 17 16 15 19 19 C 1.53120 * 109.27577 * 59.18105 * 18 17 16 20 20 F 1.39898 * 109.52105 * 182.44173 * 19 18 17 21 21 F 1.39900 * 109.57602 * 62.28029 * 19 18 17 22 22 C 1.53121 * 109.16136 * 302.34291 * 19 18 17 23 23 C 1.46843 * 110.99978 * 170.00438 * 16 15 14 24 24 C 1.53005 * 109.47053 * 299.99852 * 12 11 10 25 25 C 1.52997 * 109.46983 * 60.00135 * 24 12 11 26 26 H 0.96989 * 120.00547 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.46532 * 305.44882 * 9 7 2 28 28 H 1.08999 * 109.47557 * 60.00361 * 10 9 7 29 29 H 1.08996 * 109.47250 * 299.99408 * 10 9 7 30 30 H 1.08997 * 109.47289 * 299.99789 * 11 10 9 31 31 H 1.09003 * 109.46997 * 179.97438 * 11 10 9 32 32 H 1.08997 * 109.46975 * 179.97438 * 12 11 10 33 33 H 1.00899 * 111.00060 * 278.95619 * 13 12 11 34 34 H 1.09003 * 109.46348 * 60.00012 * 14 13 12 35 35 H 1.08998 * 109.46872 * 300.00211 * 14 13 12 36 36 H 1.08993 * 109.47778 * 300.00495 * 15 14 13 37 37 H 1.09004 * 109.47263 * 60.00264 * 15 14 13 38 38 H 1.09008 * 109.46331 * 294.17178 * 17 16 15 39 39 H 1.08999 * 109.46348 * 54.13946 * 17 16 15 40 40 H 1.08996 * 109.50304 * 299.23785 * 18 17 16 41 41 H 1.09004 * 109.50219 * 179.11817 * 18 17 16 42 42 H 1.09002 * 109.50202 * 297.71894 * 22 19 18 43 43 H 1.08991 * 109.53786 * 177.61712 * 22 19 18 44 44 H 1.08999 * 109.46299 * 305.85207 * 23 16 15 45 45 H 1.09001 * 109.46719 * 65.83773 * 23 16 15 46 46 H 1.08998 * 109.46750 * 180.02562 * 24 12 11 47 47 H 1.08997 * 109.46935 * 300.00003 * 24 12 11 48 48 H 1.09003 * 109.46988 * 180.02562 * 25 24 12 49 49 H 1.08997 * 109.47393 * 60.00148 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.3910 2.1073 -1.3948 5 1 1.5032 2.6199 0.8029 6 1 3.5954 1.4122 0.5918 7 6 2.0046 -1.1940 0.0005 8 1 3.0733 -1.2004 0.1561 9 6 1.2669 -2.4902 -0.2159 10 6 2.2325 -3.6630 -0.0345 11 6 1.4834 -4.9790 -0.2537 12 6 0.9067 -5.0077 -1.6705 13 7 1.9993 -4.8978 -2.6462 14 6 1.6173 -5.4934 -3.9337 15 6 2.7776 -5.3596 -4.9218 16 7 2.3959 -5.9557 -6.2090 17 6 2.2044 -7.4060 -6.0811 18 6 1.6685 -7.9693 -7.3993 19 6 2.6645 -7.6642 -8.5215 20 9 2.1539 -8.1279 -9.7386 21 9 3.8820 -8.2988 -8.2530 22 6 2.8831 -6.1508 -8.6018 23 6 3.3838 -5.6402 -7.2487 24 6 -0.0590 -3.8348 -1.8520 25 6 0.6902 -2.5189 -1.6328 26 1 -0.4850 0.8399 0.0004 27 1 0.4559 -2.5718 0.5077 28 1 2.6430 -3.6429 0.9750 29 1 3.0434 -3.5813 -0.7582 30 1 0.6727 -5.0605 0.4703 31 1 2.1714 -5.8145 -0.1248 32 1 0.3734 -5.9453 -1.8267 33 1 2.2848 -3.9371 -2.7628 34 1 0.7430 -4.9757 -4.3282 35 1 1.3814 -6.5479 -3.7904 36 1 3.0133 -4.3051 -5.0650 37 1 3.6523 -5.8769 -4.5274 38 1 3.1578 -7.8788 -5.8450 39 1 1.4909 -7.6091 -5.2826 40 1 0.7085 -7.5070 -7.6290 41 1 1.5413 -9.0481 -7.3090 42 1 1.9422 -5.6599 -8.8504 43 1 3.6232 -5.9296 -9.3707 44 1 3.5267 -4.5608 -7.2982 45 1 4.3316 -6.1214 -7.0072 46 1 -0.4701 -3.8555 -2.8612 47 1 -0.8697 -3.9163 -1.1280 48 1 0.0021 -1.6833 -1.7617 49 1 1.5009 -2.4374 -2.3568 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173334889.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:06 Heat of formation + Delta-G solvation = -120.842351 kcal Electronic energy + Delta-G solvation = -27449.916930 eV Core-core repulsion = 23467.079319 eV Total energy + Delta-G solvation = -3982.837611 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.202 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.26613 -47.26755 -39.18843 -38.36049 -34.82669 -33.11914 -31.86016 -31.58368 -29.71343 -29.28181 -26.84262 -24.55184 -24.28200 -23.60367 -21.72390 -21.26508 -20.71174 -20.38103 -18.13814 -17.72504 -17.12698 -16.58979 -16.30098 -15.87977 -15.74117 -15.53628 -14.70285 -14.50964 -14.26987 -14.05667 -13.90341 -13.60818 -13.45273 -13.33316 -13.02600 -12.90260 -12.77233 -12.54189 -12.37274 -12.03651 -11.83686 -11.78681 -11.58809 -11.52972 -11.30952 -11.15752 -10.99265 -10.76048 -10.65951 -10.50925 -10.16548 -10.06277 -9.97590 -9.32246 -8.85611 -8.65761 -8.64503 -8.27839 -7.94997 -5.99417 -4.00419 3.30632 3.34158 3.38463 3.41535 3.47976 3.72497 3.98975 4.11574 4.45931 4.49153 4.66480 4.80581 4.89824 4.93006 5.09177 5.13680 5.19926 5.28768 5.32124 5.41601 5.47285 5.49992 5.50619 5.61669 5.65228 5.67296 5.73219 5.91042 6.00590 6.17858 6.24456 6.38564 6.48125 6.56308 6.65570 6.71230 6.73136 6.82404 6.96369 7.15439 7.20274 7.44633 7.47152 7.76688 7.80744 8.03155 8.06859 8.50165 9.04775 9.62990 11.09401 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.021356 B = 0.002497 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.801685 B =11210.873716 C =11842.135287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.884 3.116 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.047 3.953 10 C -0.106 4.106 11 C -0.104 4.104 12 C 0.096 3.904 13 N -0.685 5.685 14 C 0.062 3.938 15 C 0.058 3.942 16 N -0.540 5.540 17 C 0.052 3.948 18 C -0.154 4.154 19 C 0.284 3.716 20 F -0.203 7.203 21 F -0.202 7.202 22 C -0.154 4.154 23 C 0.056 3.944 24 C -0.148 4.148 25 C -0.100 4.100 26 H 0.258 0.742 27 H 0.030 0.970 28 H 0.043 0.957 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.350 0.650 34 H 0.037 0.963 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.046 0.954 38 H 0.045 0.955 39 H 0.094 0.906 40 H 0.103 0.897 41 H 0.090 0.910 42 H 0.103 0.897 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.045 0.955 46 H 0.040 0.960 47 H 0.059 0.941 48 H 0.071 0.929 49 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.164 -15.260 -15.469 21.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.712 3.288 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.551 4.551 8 H 0.072 0.928 9 C 0.028 3.972 10 C -0.144 4.144 11 C -0.142 4.142 12 C -0.014 4.014 13 N -0.320 5.320 14 C -0.068 4.068 15 C -0.069 4.069 16 N -0.265 5.265 17 C -0.076 4.076 18 C -0.192 4.192 19 C 0.248 3.752 20 F -0.184 7.184 21 F -0.183 7.183 22 C -0.192 4.192 23 C -0.072 4.072 24 C -0.187 4.187 25 C -0.138 4.138 26 H 0.068 0.932 27 H 0.048 0.952 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.172 0.828 34 H 0.055 0.945 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.112 0.888 40 H 0.122 0.878 41 H 0.109 0.891 42 H 0.122 0.878 43 H 0.109 0.891 44 H 0.110 0.890 45 H 0.063 0.937 46 H 0.058 0.942 47 H 0.078 0.922 48 H 0.090 0.910 49 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 2.918 -15.520 -15.404 22.061 hybrid contribution 0.561 1.194 -0.344 1.363 sum 3.478 -14.326 -15.748 21.572 Atomic orbital electron populations 1.69965 1.05903 1.26326 1.50600 1.24964 0.94720 0.98946 0.95226 0.86716 0.80141 0.84066 0.77906 1.20822 1.21423 1.19922 1.21226 0.94067 0.91133 1.48685 0.92793 1.18665 0.94133 0.91796 0.92584 1.21564 0.98856 0.94133 0.99821 1.21530 0.99354 0.98824 0.94483 1.21453 0.90300 0.96900 0.92733 1.60678 1.38052 1.25406 1.07852 1.21880 0.95976 0.99662 0.89286 1.22050 0.97418 1.00017 0.87441 1.61906 1.46491 1.10925 1.07159 1.22112 1.01101 0.87806 0.96583 1.22597 0.99458 1.03361 0.93807 1.21222 0.80321 0.91789 0.81852 1.93007 1.87287 1.90602 1.47505 1.92996 1.46990 1.84361 1.93945 1.22590 1.05356 0.91682 0.99571 1.22030 0.93407 1.02011 0.89786 1.22243 0.98994 0.97780 0.99723 1.21510 0.98317 0.94508 0.99483 0.93176 0.95213 0.93809 0.92928 0.92716 0.93128 0.92264 0.82768 0.94477 0.91697 0.90374 0.93583 0.93676 0.88784 0.87844 0.89108 0.87821 0.89082 0.89030 0.93703 0.94159 0.92244 0.91029 0.94817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.33 12.16 55.43 0.67 -24.66 16 2 C 0.06 1.72 5.20 -17.82 -0.09 1.63 16 3 Si 0.88 21.11 29.55 -169.99 -5.02 16.09 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.51 -13.82 8.48 -34.44 -0.29 -14.11 16 8 H 0.05 1.45 7.77 -52.49 -0.41 1.04 16 9 C 0.05 1.12 1.96 -91.77 -0.18 0.94 16 10 C -0.11 -2.15 4.91 -26.73 -0.13 -2.28 16 11 C -0.10 -1.78 5.64 -26.73 -0.15 -1.93 16 12 C 0.10 1.53 2.86 -67.71 -0.19 1.34 16 13 N -0.69 -10.16 5.77 -106.73 -0.62 -10.78 16 14 C 0.06 0.76 5.41 -3.83 -0.02 0.74 16 15 C 0.06 0.63 5.22 -3.83 -0.02 0.61 16 16 N -0.54 -5.14 4.66 -234.67 -1.09 -6.23 16 17 C 0.05 0.45 5.18 -3.83 -0.02 0.43 16 18 C -0.15 -1.20 5.62 -26.65 -0.15 -1.35 16 19 C 0.28 2.55 2.12 -26.61 -0.06 2.50 16 20 F -0.20 -2.08 17.07 2.25 0.04 -2.04 16 21 F -0.20 -2.14 16.23 2.25 0.04 -2.11 16 22 C -0.15 -1.18 5.62 -26.65 -0.15 -1.33 16 23 C 0.06 0.47 5.35 -3.83 -0.02 0.45 16 24 C -0.15 -2.68 5.52 -26.73 -0.15 -2.83 16 25 C -0.10 -2.19 4.79 -26.73 -0.13 -2.32 16 26 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 27 H 0.03 0.80 8.09 -51.93 -0.42 0.38 16 28 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.05 1.06 7.21 -51.93 -0.37 0.69 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.87 7.80 -51.93 -0.40 0.46 16 33 H 0.35 5.72 5.56 -39.29 -0.22 5.50 16 34 H 0.04 0.49 7.44 -51.93 -0.39 0.11 16 35 H 0.06 0.75 6.34 -51.93 -0.33 0.42 16 36 H 0.08 0.87 7.99 -51.93 -0.41 0.45 16 37 H 0.05 0.52 8.12 -51.93 -0.42 0.10 16 38 H 0.05 0.42 7.88 -51.92 -0.41 0.01 16 39 H 0.09 0.78 6.21 -51.93 -0.32 0.46 16 40 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.09 0.71 8.02 -51.93 -0.42 0.29 16 45 H 0.04 0.40 7.88 -51.93 -0.41 -0.01 16 46 H 0.04 0.68 7.45 -51.93 -0.39 0.29 16 47 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 48 H 0.07 1.80 6.91 -51.93 -0.36 1.45 16 49 H 0.03 0.71 6.26 -51.93 -0.32 0.39 16 LS Contribution 370.97 15.07 5.59 5.59 Total: -1.00 -27.99 370.97 -10.67 -38.66 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -8.52 Total: 3.00 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: -1.75 Total: -17.52 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: -1.03 Total: -41.67 kcal Atomic # 9 Polarization: -4.22 SS G_CDS: 0.07 Total: -4.14 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -27.99 -10.67 -38.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173334889.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.182 kcal (2) G-P(sol) polarization free energy of solvation -27.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds