Wall clock time and date at job start Tue Mar 31 2020 10:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 119.99747 * 2 1 4 4 H 1.48501 * 109.47090 * 274.98989 * 3 2 1 5 5 H 1.48498 * 109.47372 * 34.99169 * 3 2 1 6 6 H 1.48504 * 109.47599 * 154.99387 * 3 2 1 7 7 C 1.37878 * 120.00440 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00297 * 189.57281 * 7 2 1 9 9 C 1.50705 * 119.99986 * 9.57339 * 7 2 1 10 10 C 1.52993 * 109.47057 * 185.44538 * 9 7 2 11 11 C 1.53007 * 109.46751 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47211 * 60.00105 * 11 10 9 13 13 N 1.46898 * 109.47283 * 59.99742 * 12 11 10 14 14 C 1.46905 * 111.00249 * 154.99899 * 13 12 11 15 15 C 1.52993 * 109.47223 * 179.97438 * 14 13 12 16 16 N 1.46905 * 109.47223 * 179.97438 * 15 14 13 17 17 C 1.46844 * 110.99965 * 294.21544 * 16 15 14 18 18 C 1.53039 * 109.52313 * 174.15656 * 17 16 15 19 19 C 1.53120 * 109.27577 * 59.18105 * 18 17 16 20 20 F 1.39898 * 109.52105 * 182.44173 * 19 18 17 21 21 F 1.39900 * 109.57602 * 62.28029 * 19 18 17 22 22 C 1.53121 * 109.16136 * 302.34291 * 19 18 17 23 23 C 1.46843 * 110.99978 * 170.00438 * 16 15 14 24 24 C 1.53005 * 109.47053 * 299.99852 * 12 11 10 25 25 C 1.52997 * 109.46983 * 60.00135 * 24 12 11 26 26 H 0.96989 * 120.00547 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.46532 * 305.44882 * 9 7 2 28 28 H 1.08999 * 109.47557 * 60.00361 * 10 9 7 29 29 H 1.08996 * 109.47250 * 299.99408 * 10 9 7 30 30 H 1.08997 * 109.47289 * 299.99789 * 11 10 9 31 31 H 1.09003 * 109.46997 * 179.97438 * 11 10 9 32 32 H 1.08997 * 109.46975 * 179.97438 * 12 11 10 33 33 H 1.00899 * 111.00060 * 278.95619 * 13 12 11 34 34 H 1.09003 * 109.46348 * 60.00012 * 14 13 12 35 35 H 1.08998 * 109.46872 * 300.00211 * 14 13 12 36 36 H 1.08993 * 109.47778 * 300.00495 * 15 14 13 37 37 H 1.09004 * 109.47263 * 60.00264 * 15 14 13 38 38 H 1.09008 * 109.46331 * 294.17178 * 17 16 15 39 39 H 1.08999 * 109.46348 * 54.13946 * 17 16 15 40 40 H 1.08996 * 109.50304 * 299.23785 * 18 17 16 41 41 H 1.09004 * 109.50219 * 179.11817 * 18 17 16 42 42 H 1.09002 * 109.50202 * 297.71894 * 22 19 18 43 43 H 1.08991 * 109.53786 * 177.61712 * 22 19 18 44 44 H 1.08999 * 109.46299 * 305.85207 * 23 16 15 45 45 H 1.09001 * 109.46719 * 65.83773 * 23 16 15 46 46 H 1.08998 * 109.46750 * 180.02562 * 24 12 11 47 47 H 1.08997 * 109.46935 * 300.00003 * 24 12 11 48 48 H 1.09003 * 109.46988 * 180.02562 * 25 24 12 49 49 H 1.08997 * 109.47393 * 60.00148 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.3910 2.1073 -1.3948 5 1 1.5032 2.6199 0.8029 6 1 3.5954 1.4122 0.5918 7 6 2.0046 -1.1940 0.0005 8 1 3.0733 -1.2004 0.1561 9 6 1.2669 -2.4902 -0.2159 10 6 2.2325 -3.6630 -0.0345 11 6 1.4834 -4.9790 -0.2537 12 6 0.9067 -5.0077 -1.6705 13 7 1.9993 -4.8978 -2.6462 14 6 1.6173 -5.4934 -3.9337 15 6 2.7776 -5.3596 -4.9218 16 7 2.3959 -5.9557 -6.2090 17 6 2.2044 -7.4060 -6.0811 18 6 1.6685 -7.9693 -7.3993 19 6 2.6645 -7.6642 -8.5215 20 9 2.1539 -8.1279 -9.7386 21 9 3.8820 -8.2988 -8.2530 22 6 2.8831 -6.1508 -8.6018 23 6 3.3838 -5.6402 -7.2487 24 6 -0.0590 -3.8348 -1.8520 25 6 0.6902 -2.5189 -1.6328 26 1 -0.4850 0.8399 0.0004 27 1 0.4559 -2.5718 0.5077 28 1 2.6430 -3.6429 0.9750 29 1 3.0434 -3.5813 -0.7582 30 1 0.6727 -5.0605 0.4703 31 1 2.1714 -5.8145 -0.1248 32 1 0.3734 -5.9453 -1.8267 33 1 2.2848 -3.9371 -2.7628 34 1 0.7430 -4.9757 -4.3282 35 1 1.3814 -6.5479 -3.7904 36 1 3.0133 -4.3051 -5.0650 37 1 3.6523 -5.8769 -4.5274 38 1 3.1578 -7.8788 -5.8450 39 1 1.4909 -7.6091 -5.2826 40 1 0.7085 -7.5070 -7.6290 41 1 1.5413 -9.0481 -7.3090 42 1 1.9422 -5.6599 -8.8504 43 1 3.6232 -5.9296 -9.3707 44 1 3.5267 -4.5608 -7.2982 45 1 4.3316 -6.1214 -7.0072 46 1 -0.4701 -3.8555 -2.8612 47 1 -0.8697 -3.9163 -1.1280 48 1 0.0021 -1.6833 -1.7617 49 1 1.5009 -2.4374 -2.3568 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173334889.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:06 Heat of formation + Delta-G solvation = -136.529317 kcal Electronic energy + Delta-G solvation = -27450.597168 eV Core-core repulsion = 23467.079319 eV Total energy + Delta-G solvation = -3983.517849 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.202 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.00431 -48.02000 -40.23586 -39.50504 -36.15468 -34.57865 -33.16940 -32.25002 -31.30033 -30.76363 -27.97559 -26.35886 -25.03570 -24.35086 -23.21041 -22.43922 -22.20453 -21.07744 -19.62399 -18.47094 -18.36606 -17.85875 -17.29417 -17.10408 -16.56902 -16.50987 -16.30309 -15.50473 -15.43338 -15.08570 -14.92184 -14.81730 -14.63819 -14.33377 -14.14733 -13.88176 -13.81576 -13.60209 -13.46314 -13.40139 -13.13312 -12.97231 -12.83049 -12.69742 -12.52009 -12.41297 -12.31061 -12.15794 -12.01503 -11.78531 -11.69220 -11.65875 -11.26884 -11.07493 -10.59773 -10.46965 -10.34847 -9.40452 -9.17122 -8.09704 -6.17392 1.40036 1.42012 1.51570 2.44996 2.60662 2.79047 3.09543 3.20077 3.34407 3.41131 3.58178 3.86109 4.04012 4.11298 4.15597 4.21158 4.23009 4.28558 4.33873 4.49971 4.53921 4.57036 4.64590 4.66529 4.71916 4.81941 4.84022 4.88099 4.89961 4.92518 4.98888 5.00729 5.04021 5.09231 5.16189 5.29756 5.32570 5.43882 5.52587 5.66960 5.71079 5.93611 5.99635 6.08211 6.14842 6.29028 6.46489 6.55311 6.96748 7.49347 8.98198 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.021356 B = 0.002497 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.801685 B =11210.873716 C =11842.135287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.014 3.986 3 Si 0.945 3.055 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.269 1.269 7 C -0.531 4.531 8 H 0.049 0.951 9 C 0.045 3.955 10 C -0.097 4.097 11 C -0.099 4.099 12 C 0.104 3.896 13 N -0.686 5.686 14 C 0.066 3.934 15 C 0.066 3.934 16 N -0.542 5.542 17 C 0.053 3.947 18 C -0.149 4.149 19 C 0.277 3.723 20 F -0.211 7.211 21 F -0.213 7.213 22 C -0.149 4.149 23 C 0.056 3.944 24 C -0.139 4.139 25 C -0.089 4.089 26 H 0.258 0.742 27 H -0.009 1.009 28 H 0.034 0.966 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.341 0.659 34 H 0.030 0.970 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.042 0.958 38 H 0.039 0.961 39 H 0.100 0.900 40 H 0.111 0.889 41 H 0.100 0.900 42 H 0.111 0.889 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.039 0.961 46 H 0.054 0.946 47 H 0.048 0.952 48 H 0.032 0.968 49 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.708 -16.332 -16.575 23.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.184 4.184 3 Si 0.771 3.229 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.193 1.193 7 C -0.569 4.569 8 H 0.068 0.932 9 C 0.026 3.974 10 C -0.135 4.135 11 C -0.137 4.137 12 C -0.006 4.006 13 N -0.319 5.319 14 C -0.063 4.063 15 C -0.062 4.062 16 N -0.268 5.268 17 C -0.075 4.075 18 C -0.187 4.187 19 C 0.241 3.759 20 F -0.192 7.192 21 F -0.195 7.195 22 C -0.187 4.187 23 C -0.072 4.072 24 C -0.178 4.178 25 C -0.127 4.127 26 H 0.067 0.933 27 H 0.009 0.991 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.161 0.839 34 H 0.048 0.952 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.118 0.882 40 H 0.129 0.871 41 H 0.119 0.881 42 H 0.129 0.871 43 H 0.119 0.881 44 H 0.116 0.884 45 H 0.058 0.942 46 H 0.073 0.927 47 H 0.067 0.933 48 H 0.050 0.950 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 3.473 -16.609 -16.519 23.681 hybrid contribution 0.401 1.518 0.006 1.570 sum 3.874 -15.092 -16.513 22.703 Atomic orbital electron populations 1.70090 1.07245 1.26982 1.51558 1.25696 0.95475 1.02202 0.95074 0.85746 0.78998 0.80080 0.78072 1.20130 1.21316 1.19300 1.21621 0.94081 0.92776 1.48412 0.93235 1.18628 0.93561 0.92408 0.92757 1.21414 0.98262 0.94480 0.99344 1.21485 0.99379 0.97374 0.95421 1.21380 0.90073 0.96776 0.92373 1.60678 1.37454 1.24715 1.09027 1.21900 0.96161 0.99965 0.88280 1.21903 0.96637 0.99854 0.87820 1.61916 1.46739 1.11473 1.06640 1.22135 1.00978 0.87175 0.97235 1.22588 0.99269 1.04084 0.92808 1.21508 0.80141 0.92386 0.81873 1.92989 1.87364 1.90768 1.48106 1.92973 1.47802 1.84670 1.94007 1.22580 1.06048 0.90721 0.99369 1.22063 0.92942 1.02428 0.89791 1.22137 0.98828 0.96612 1.00236 1.21267 0.97841 0.95394 0.98212 0.93261 0.99078 0.94727 0.92675 0.92878 0.91056 0.89659 0.83856 0.95155 0.90377 0.90856 0.93973 0.94320 0.88190 0.87076 0.88119 0.87094 0.88109 0.88379 0.94248 0.92685 0.93272 0.94954 0.94309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.76 12.16 21.45 0.26 -53.50 16 2 C 0.01 0.78 5.20 84.66 0.44 1.22 16 3 Si 0.94 43.72 29.55 68.60 2.03 45.74 16 4 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 5 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 7 C -0.53 -29.14 8.48 25.60 0.22 -28.92 16 8 H 0.05 2.69 7.77 -2.91 -0.02 2.67 16 9 C 0.04 2.20 1.96 -11.54 -0.02 2.18 16 10 C -0.10 -3.91 4.91 30.59 0.15 -3.76 16 11 C -0.10 -3.20 5.64 30.60 0.17 -3.03 16 12 C 0.10 3.08 2.86 44.92 0.13 3.21 16 13 N -0.69 -18.79 5.77 -491.57 -2.83 -21.62 16 14 C 0.07 1.46 5.41 86.30 0.47 1.93 16 15 C 0.07 1.30 5.22 86.30 0.45 1.75 16 16 N -0.54 -9.23 4.66 -896.36 -4.17 -13.40 16 17 C 0.05 0.79 5.18 86.33 0.45 1.24 16 18 C -0.15 -2.01 5.62 30.65 0.17 -1.83 16 19 C 0.28 4.52 2.12 30.67 0.06 4.58 16 20 F -0.21 -4.01 17.07 44.97 0.77 -3.25 16 21 F -0.21 -4.27 16.23 44.97 0.73 -3.54 16 22 C -0.15 -2.01 5.62 30.65 0.17 -1.83 16 23 C 0.06 0.84 5.35 86.33 0.46 1.30 16 24 C -0.14 -4.90 5.52 30.60 0.17 -4.73 16 25 C -0.09 -3.94 4.79 30.59 0.15 -3.80 16 26 H 0.26 14.43 8.31 -92.72 -0.77 13.66 16 27 H -0.01 -0.51 8.09 -2.39 -0.02 -0.53 16 28 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.05 2.18 7.21 -2.39 -0.02 2.16 16 30 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.09 2.17 7.80 -2.39 -0.02 2.15 16 33 H 0.34 10.60 5.56 -89.69 -0.50 10.10 16 34 H 0.03 0.73 7.44 -2.39 -0.02 0.71 16 35 H 0.08 1.54 6.34 -2.39 -0.02 1.53 16 36 H 0.07 1.52 7.99 -2.39 -0.02 1.50 16 37 H 0.04 0.87 8.12 -2.39 -0.02 0.85 16 38 H 0.04 0.64 7.88 -2.38 -0.02 0.62 16 39 H 0.10 1.39 6.21 -2.39 -0.01 1.37 16 40 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 42 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.10 1.35 8.02 -2.39 -0.02 1.33 16 45 H 0.04 0.64 7.88 -2.39 -0.02 0.63 16 46 H 0.05 1.78 7.45 -2.39 -0.02 1.76 16 47 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 48 H 0.03 1.67 6.91 -2.39 -0.02 1.65 16 49 H 0.04 1.65 6.26 -2.39 -0.01 1.64 16 Total: -1.00 -60.72 370.97 0.84 -59.88 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.43 Total: 20.19 kcal Atomic # 6 Polarization: -34.15 SS G_CDS: 3.64 Total: -30.51 kcal Atomic # 7 Polarization: -81.77 SS G_CDS: -6.75 Total: -88.52 kcal Atomic # 9 Polarization: -8.28 SS G_CDS: 1.50 Total: -6.79 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Total: -60.72 0.84 -59.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173334889.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.652 kcal (2) G-P(sol) polarization free energy of solvation -60.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds