Wall clock time and date at job start Tue Mar 31 2020 10:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99575 * 2 1 4 4 H 1.48501 * 109.47230 * 240.00066 * 3 2 1 5 5 H 1.48498 * 109.47332 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47355 * 119.99948 * 3 2 1 7 7 C 1.37872 * 120.00404 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99905 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99725 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46986 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47249 * 300.00055 * 10 9 7 12 12 C 1.53003 * 109.47334 * 299.99978 * 11 10 9 13 13 N 1.46899 * 109.47404 * 179.97438 * 12 11 10 14 14 C 1.46954 * 111.00078 * 174.99957 * 13 12 11 15 15 C 1.53044 * 109.36481 * 183.18977 * 14 13 12 16 16 N 1.46956 * 109.36476 * 301.59798 * 15 14 13 17 17 C 1.39742 * 111.00520 * 183.18788 * 16 15 14 18 18 C 1.39262 * 120.87790 * 179.97438 * 17 16 15 19 19 N 1.32264 * 119.01188 * 180.02562 * 18 17 16 20 20 C 1.31797 * 120.89453 * 0.02562 * 19 18 17 21 21 N 1.31789 * 121.93589 * 359.97438 * 20 19 18 22 22 C 1.32271 * 120.89524 * 0.02562 * 21 20 19 23 23 C 1.46959 * 110.88266 * 59.31947 * 16 15 14 24 24 C 1.46953 * 110.99745 * 298.79927 * 13 12 11 25 25 C 1.53000 * 109.46935 * 59.99830 * 12 11 10 26 26 C 1.52999 * 109.47219 * 60.00003 * 9 7 2 27 27 H 0.96997 * 120.00267 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47020 * 299.99546 * 9 7 2 29 29 H 1.08996 * 109.47139 * 179.97438 * 10 9 7 30 30 H 1.09000 * 109.47345 * 60.00085 * 10 9 7 31 31 H 1.09001 * 109.47264 * 179.97438 * 11 10 9 32 32 H 1.09005 * 109.46946 * 59.99900 * 11 10 9 33 33 H 1.08996 * 109.46978 * 300.00012 * 12 11 10 34 34 H 1.08999 * 109.48761 * 63.21860 * 14 13 12 35 35 H 1.09001 * 109.50736 * 303.16829 * 14 13 12 36 36 H 1.08998 * 109.49062 * 181.63480 * 15 14 13 37 37 H 1.08996 * 109.49345 * 61.56569 * 15 14 13 38 38 H 1.08001 * 120.50070 * 0.05026 * 18 17 16 39 39 H 1.07997 * 119.03142 * 179.97438 * 20 19 18 40 40 H 1.08000 * 120.48850 * 180.02562 * 22 21 20 41 41 H 1.09003 * 109.48155 * 60.64685 * 23 16 15 42 42 H 1.08993 * 109.49213 * 180.71188 * 23 16 15 43 43 H 1.08998 * 109.49534 * 296.77779 * 24 13 12 44 44 H 1.08999 * 109.49340 * 56.82676 * 24 13 12 45 45 H 1.09005 * 109.47229 * 60.00149 * 25 12 11 46 46 H 1.09000 * 109.47345 * 180.02562 * 25 12 11 47 47 H 1.08996 * 109.47141 * 179.97438 * 26 9 7 48 48 H 1.08998 * 109.46877 * 299.99986 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 3.1241 -3.5803 -1.2517 12 6 2.2435 -3.6609 -2.5003 13 7 3.0871 -3.5819 -3.7004 14 6 2.2888 -3.7749 -4.9189 15 6 3.2135 -3.7650 -6.1383 16 7 3.9428 -2.4901 -6.1865 17 6 4.7454 -2.4149 -7.3280 18 6 5.5272 -1.2902 -7.5791 19 7 6.2726 -1.2579 -8.6713 20 6 6.2810 -2.2704 -9.5150 21 7 5.5556 -3.3520 -9.3132 22 6 4.7834 -3.4624 -8.2450 23 6 4.7412 -2.2970 -4.9679 24 6 3.8163 -2.3070 -3.7484 25 6 1.2492 -2.4980 -2.4990 26 6 0.3710 -2.5799 -1.2494 27 1 -0.4850 0.8400 0.0004 28 1 0.6249 -2.5571 0.8897 29 1 1.7005 -4.6059 -0.0014 30 1 2.8728 -3.6046 0.8877 31 1 3.8327 -4.4085 -1.2523 32 1 3.6690 -2.6363 -1.2516 33 1 1.6986 -4.6048 -2.5003 34 1 1.5606 -2.9687 -5.0081 35 1 1.7680 -4.7310 -4.8653 36 1 2.6203 -3.8790 -7.0456 37 1 3.9243 -4.5879 -6.0625 38 1 5.5253 -0.4567 -6.8922 39 1 6.9006 -2.2120 -10.3976 40 1 4.1919 -4.3519 -8.0859 41 1 5.4693 -3.1032 -4.8787 42 1 5.2617 -1.3408 -5.0218 43 1 3.1057 -1.4840 -3.8243 44 1 4.4094 -2.1927 -2.8410 45 1 1.7942 -1.5539 -2.4990 46 1 0.6216 -2.5556 -3.3883 47 1 -0.1736 -3.5240 -1.2497 48 1 -0.3373 -1.7514 -1.2489 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173337052.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:49 Heat of formation + Delta-G solvation = 59.908621 kcal Electronic energy + Delta-G solvation = -27471.493312 eV Core-core repulsion = 23947.182838 eV Total energy + Delta-G solvation = -3524.310474 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.48292 -39.69667 -37.79568 -35.15004 -33.96416 -32.34922 -31.22914 -30.84661 -29.59710 -28.54329 -26.10058 -25.40967 -24.51272 -23.28247 -23.02679 -21.69841 -20.87486 -19.59245 -18.42224 -18.11308 -17.57822 -16.97809 -15.81871 -15.48217 -15.25676 -14.90945 -14.82778 -14.51711 -14.38745 -13.94025 -13.80845 -13.66526 -13.61754 -13.18415 -12.75361 -12.37082 -11.92054 -11.84989 -11.58871 -11.42752 -11.25514 -11.16122 -11.04566 -10.98729 -10.89283 -10.83659 -10.62823 -10.44324 -10.18233 -9.99535 -9.75173 -9.42033 -9.20835 -8.98520 -8.69032 -8.34561 -8.31500 -7.84347 -5.98982 -4.03771 0.69966 0.83104 3.27658 3.28784 3.34056 3.35747 3.61047 3.99853 4.03146 4.10247 4.25235 4.41409 4.52456 4.68999 4.93032 5.10521 5.14451 5.19823 5.30624 5.31734 5.40223 5.45346 5.53872 5.64326 5.71978 5.86219 5.95520 5.98706 6.06478 6.13507 6.28598 6.38520 6.43725 6.48819 6.52592 6.57231 6.68654 6.73122 6.82968 6.89874 7.02331 7.10614 7.28514 7.41121 7.43494 7.55328 7.72366 7.87594 7.92332 8.13782 8.46470 8.98664 9.59554 11.06693 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.017525 B = 0.003528 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.343160 B = 7935.161900 C = 8902.862597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.882 3.118 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.501 4.501 8 H 0.054 0.946 9 C 0.043 3.957 10 C -0.107 4.107 11 C -0.097 4.097 12 C 0.091 3.909 13 N -0.536 5.536 14 C 0.053 3.947 15 C 0.051 3.949 16 N -0.477 5.477 17 C 0.022 3.978 18 C 0.126 3.874 19 N -0.497 5.497 20 C 0.252 3.748 21 N -0.498 5.498 22 C 0.094 3.906 23 C 0.061 3.939 24 C 0.049 3.951 25 C -0.129 4.129 26 C -0.104 4.104 27 H 0.259 0.741 28 H 0.023 0.977 29 H 0.033 0.967 30 H 0.047 0.953 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.050 0.950 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.057 0.943 38 H 0.169 0.831 39 H 0.193 0.807 40 H 0.169 0.831 41 H 0.053 0.947 42 H 0.084 0.916 43 H 0.056 0.944 44 H 0.093 0.907 45 H 0.075 0.925 46 H 0.031 0.969 47 H 0.012 0.988 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.907 -7.195 -13.582 17.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.710 3.290 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.539 4.539 8 H 0.072 0.928 9 C 0.025 3.975 10 C -0.145 4.145 11 C -0.134 4.134 12 C -0.016 4.016 13 N -0.259 5.259 14 C -0.076 4.076 15 C -0.076 4.076 16 N -0.192 5.192 17 C -0.082 4.082 18 C -0.044 4.044 19 N -0.210 5.210 20 C -0.036 4.036 21 N -0.211 5.211 22 C -0.076 4.076 23 C -0.064 4.064 24 C -0.079 4.079 25 C -0.168 4.168 26 C -0.143 4.143 27 H 0.069 0.931 28 H 0.041 0.959 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.075 0.925 38 H 0.186 0.814 39 H 0.210 0.790 40 H 0.186 0.814 41 H 0.071 0.929 42 H 0.103 0.897 43 H 0.074 0.926 44 H 0.111 0.889 45 H 0.093 0.907 46 H 0.049 0.951 47 H 0.031 0.969 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.298 -7.032 -14.322 17.984 hybrid contribution -0.323 1.091 0.647 1.308 sum 7.976 -5.942 -13.675 16.909 Atomic orbital electron populations 1.69852 1.05829 1.26288 1.51012 1.24928 0.94728 0.98729 0.95486 0.86826 0.79753 0.83862 0.78568 1.20359 1.21427 1.20377 1.21090 0.92589 0.90434 1.49832 0.92831 1.18686 0.92699 0.92109 0.94000 1.21545 0.98283 0.98605 0.96032 1.21457 0.97321 1.01105 0.93560 1.21731 0.92908 0.98458 0.88489 1.62521 1.28373 1.32790 1.02261 1.22128 0.94746 1.01907 0.88800 1.22433 0.97069 0.88580 0.99474 1.59158 1.25022 1.33922 1.01078 1.20878 0.95135 0.96357 0.95813 1.23002 0.91090 0.96007 0.94292 1.68349 1.19767 1.29594 1.03309 1.24769 0.95663 0.85038 0.98115 1.68286 1.06409 1.26173 1.20210 1.23456 0.96288 0.97142 0.90692 1.22448 0.94882 1.01802 0.87301 1.22252 0.97007 0.91926 0.96746 1.21978 0.97765 0.99207 0.97820 1.21445 0.98683 0.99280 0.94854 0.93106 0.95864 0.94821 0.93432 0.93848 0.91136 0.91316 0.93160 0.90000 0.89778 0.92515 0.81356 0.79007 0.81428 0.92864 0.89748 0.92602 0.88900 0.90677 0.95050 0.96885 0.89233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.54 11.32 55.43 0.63 -23.91 16 2 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 3 Si 0.88 20.50 29.54 -169.99 -5.02 15.48 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.50 -12.69 6.61 -34.44 -0.23 -12.92 16 8 H 0.05 1.34 6.71 -52.49 -0.35 0.99 16 9 C 0.04 1.02 2.59 -91.77 -0.24 0.78 16 10 C -0.11 -2.08 5.41 -26.73 -0.14 -2.23 16 11 C -0.10 -1.70 4.78 -26.73 -0.13 -1.83 16 12 C 0.09 1.51 2.23 -67.71 -0.15 1.36 16 13 N -0.54 -7.59 4.70 -226.50 -1.06 -8.65 16 14 C 0.05 0.65 5.25 -3.77 -0.02 0.63 16 15 C 0.05 0.53 4.32 -3.77 -0.02 0.51 16 16 N -0.48 -5.39 4.77 -170.71 -0.81 -6.21 16 17 C 0.02 0.24 5.66 -83.49 -0.47 -0.23 16 18 C 0.13 1.39 10.49 -16.98 -0.18 1.21 16 19 N -0.50 -5.74 10.43 -14.43 -0.15 -5.89 16 20 C 0.25 2.65 12.28 -92.16 -1.13 1.52 16 21 N -0.50 -5.62 10.43 -14.43 -0.15 -5.77 16 22 C 0.09 0.99 10.09 -16.98 -0.17 0.81 16 23 C 0.06 0.70 5.39 -3.76 -0.02 0.68 16 24 C 0.05 0.69 4.81 -3.77 -0.02 0.67 16 25 C -0.13 -2.49 4.28 -26.76 -0.11 -2.61 16 26 C -0.10 -2.31 5.23 -26.76 -0.14 -2.45 16 27 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 1.33 4.84 -51.93 -0.25 1.08 16 33 H 0.07 1.13 8.11 -51.93 -0.42 0.71 16 34 H 0.05 0.70 6.60 -51.93 -0.34 0.36 16 35 H 0.08 0.92 8.12 -51.93 -0.42 0.50 16 36 H 0.08 0.74 7.22 -51.93 -0.37 0.36 16 37 H 0.06 0.56 7.63 -51.93 -0.40 0.16 16 38 H 0.17 1.61 7.28 -52.49 -0.38 1.23 16 39 H 0.19 1.40 8.06 -52.49 -0.42 0.98 16 40 H 0.17 1.43 5.98 -52.49 -0.31 1.11 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.08 0.87 6.91 -51.93 -0.36 0.51 16 43 H 0.06 0.91 6.46 -51.93 -0.34 0.57 16 44 H 0.09 1.37 6.17 -51.93 -0.32 1.05 16 45 H 0.07 1.63 5.53 -51.93 -0.29 1.34 16 46 H 0.03 0.57 6.59 -51.93 -0.34 0.23 16 47 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 48 H 0.09 2.28 6.07 -51.93 -0.32 1.97 16 LS Contribution 352.66 15.07 5.31 5.31 Total: -1.00 -27.82 352.66 -11.83 -39.65 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -7.31 Total: 2.54 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -3.27 Total: -12.56 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: -1.55 Total: -50.43 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -27.82 -11.83 -39.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173337052.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.560 kcal (2) G-P(sol) polarization free energy of solvation -27.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds