Wall clock time and date at job start Tue Mar 31 2020 10:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99575 * 2 1 4 4 H 1.48501 * 109.47230 * 240.00066 * 3 2 1 5 5 H 1.48498 * 109.47332 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47355 * 119.99948 * 3 2 1 7 7 C 1.37872 * 120.00404 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99905 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99725 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46986 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47249 * 300.00055 * 10 9 7 12 12 C 1.53003 * 109.47334 * 299.99978 * 11 10 9 13 13 N 1.46899 * 109.47404 * 179.97438 * 12 11 10 14 14 C 1.46954 * 111.00078 * 174.99957 * 13 12 11 15 15 C 1.53044 * 109.36481 * 183.18977 * 14 13 12 16 16 N 1.46956 * 109.36476 * 301.59798 * 15 14 13 17 17 C 1.39742 * 111.00520 * 183.18788 * 16 15 14 18 18 C 1.39262 * 120.87790 * 179.97438 * 17 16 15 19 19 N 1.32264 * 119.01188 * 180.02562 * 18 17 16 20 20 C 1.31797 * 120.89453 * 0.02562 * 19 18 17 21 21 N 1.31789 * 121.93589 * 359.97438 * 20 19 18 22 22 C 1.32271 * 120.89524 * 0.02562 * 21 20 19 23 23 C 1.46959 * 110.88266 * 59.31947 * 16 15 14 24 24 C 1.46953 * 110.99745 * 298.79927 * 13 12 11 25 25 C 1.53000 * 109.46935 * 59.99830 * 12 11 10 26 26 C 1.52999 * 109.47219 * 60.00003 * 9 7 2 27 27 H 0.96997 * 120.00267 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47020 * 299.99546 * 9 7 2 29 29 H 1.08996 * 109.47139 * 179.97438 * 10 9 7 30 30 H 1.09000 * 109.47345 * 60.00085 * 10 9 7 31 31 H 1.09001 * 109.47264 * 179.97438 * 11 10 9 32 32 H 1.09005 * 109.46946 * 59.99900 * 11 10 9 33 33 H 1.08996 * 109.46978 * 300.00012 * 12 11 10 34 34 H 1.08999 * 109.48761 * 63.21860 * 14 13 12 35 35 H 1.09001 * 109.50736 * 303.16829 * 14 13 12 36 36 H 1.08998 * 109.49062 * 181.63480 * 15 14 13 37 37 H 1.08996 * 109.49345 * 61.56569 * 15 14 13 38 38 H 1.08001 * 120.50070 * 0.05026 * 18 17 16 39 39 H 1.07997 * 119.03142 * 179.97438 * 20 19 18 40 40 H 1.08000 * 120.48850 * 180.02562 * 22 21 20 41 41 H 1.09003 * 109.48155 * 60.64685 * 23 16 15 42 42 H 1.08993 * 109.49213 * 180.71188 * 23 16 15 43 43 H 1.08998 * 109.49534 * 296.77779 * 24 13 12 44 44 H 1.08999 * 109.49340 * 56.82676 * 24 13 12 45 45 H 1.09005 * 109.47229 * 60.00149 * 25 12 11 46 46 H 1.09000 * 109.47345 * 180.02562 * 25 12 11 47 47 H 1.08996 * 109.47141 * 179.97438 * 26 9 7 48 48 H 1.08998 * 109.46877 * 299.99986 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 3.1241 -3.5803 -1.2517 12 6 2.2435 -3.6609 -2.5003 13 7 3.0871 -3.5819 -3.7004 14 6 2.2888 -3.7749 -4.9189 15 6 3.2135 -3.7650 -6.1383 16 7 3.9428 -2.4901 -6.1865 17 6 4.7454 -2.4149 -7.3280 18 6 5.5272 -1.2902 -7.5791 19 7 6.2726 -1.2579 -8.6713 20 6 6.2810 -2.2704 -9.5150 21 7 5.5556 -3.3520 -9.3132 22 6 4.7834 -3.4624 -8.2450 23 6 4.7412 -2.2970 -4.9679 24 6 3.8163 -2.3070 -3.7484 25 6 1.2492 -2.4980 -2.4990 26 6 0.3710 -2.5799 -1.2494 27 1 -0.4850 0.8400 0.0004 28 1 0.6249 -2.5571 0.8897 29 1 1.7005 -4.6059 -0.0014 30 1 2.8728 -3.6046 0.8877 31 1 3.8327 -4.4085 -1.2523 32 1 3.6690 -2.6363 -1.2516 33 1 1.6986 -4.6048 -2.5003 34 1 1.5606 -2.9687 -5.0081 35 1 1.7680 -4.7310 -4.8653 36 1 2.6203 -3.8790 -7.0456 37 1 3.9243 -4.5879 -6.0625 38 1 5.5253 -0.4567 -6.8922 39 1 6.9006 -2.2120 -10.3976 40 1 4.1919 -4.3519 -8.0859 41 1 5.4693 -3.1032 -4.8787 42 1 5.2617 -1.3408 -5.0218 43 1 3.1057 -1.4840 -3.8243 44 1 4.4094 -2.1927 -2.8410 45 1 1.7942 -1.5539 -2.4990 46 1 0.6216 -2.5556 -3.3883 47 1 -0.1736 -3.5240 -1.2497 48 1 -0.3373 -1.7514 -1.2489 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173337052.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:48 Heat of formation + Delta-G solvation = 43.437477 kcal Electronic energy + Delta-G solvation = -27472.207554 eV Core-core repulsion = 23947.182838 eV Total energy + Delta-G solvation = -3525.024717 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.30521 -40.84451 -39.05428 -36.48101 -34.76959 -34.13712 -32.20828 -31.96463 -31.19820 -29.88029 -27.37939 -26.49843 -26.02666 -24.23275 -23.98702 -23.18270 -22.21498 -20.94584 -19.95143 -18.90538 -18.41397 -17.86058 -17.67951 -16.77692 -16.48051 -16.21342 -15.89299 -15.80409 -15.36228 -15.19281 -14.98346 -14.76166 -14.55672 -14.52590 -14.43987 -13.64328 -13.32114 -13.16611 -12.91143 -12.84160 -12.59339 -12.55547 -12.49173 -12.38046 -12.19635 -12.08358 -11.86906 -11.77108 -11.52978 -11.44426 -11.29900 -10.89967 -10.69934 -10.49429 -10.30168 -10.23030 -9.19454 -9.08411 -8.02012 -6.11883 -0.09318 0.02855 1.40603 1.42127 1.47744 2.45313 2.45498 2.80891 2.95653 3.26148 3.26459 3.31138 3.47537 3.69303 3.80507 3.93479 4.11812 4.21762 4.26347 4.30535 4.35673 4.40696 4.49928 4.51562 4.63004 4.73792 4.76655 4.81078 4.82530 4.90585 4.90906 4.96064 5.02457 5.09949 5.13899 5.25156 5.30082 5.45893 5.55649 5.62686 5.66667 5.71725 5.72276 5.75934 5.94595 6.08188 6.19874 6.23333 6.25340 6.47871 6.98678 7.08737 7.54095 9.02251 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.017525 B = 0.003528 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.343160 B = 7935.161900 C = 8902.862597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.015 3.985 3 Si 0.935 3.065 4 H -0.269 1.269 5 H -0.292 1.292 6 H -0.274 1.274 7 C -0.501 4.501 8 H 0.054 0.946 9 C 0.038 3.962 10 C -0.101 4.101 11 C -0.089 4.089 12 C 0.101 3.899 13 N -0.527 5.527 14 C 0.051 3.949 15 C 0.055 3.945 16 N -0.486 5.486 17 C 0.017 3.983 18 C 0.118 3.882 19 N -0.514 5.514 20 C 0.250 3.750 21 N -0.512 5.512 22 C 0.095 3.905 23 C 0.069 3.931 24 C 0.052 3.948 25 C -0.115 4.115 26 C -0.100 4.100 27 H 0.255 0.745 28 H -0.015 1.015 29 H 0.050 0.950 30 H 0.046 0.954 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.081 0.919 34 H 0.031 0.969 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.069 0.931 38 H 0.177 0.823 39 H 0.219 0.781 40 H 0.188 0.812 41 H 0.059 0.941 42 H 0.094 0.906 43 H 0.029 0.971 44 H 0.084 0.916 45 H 0.047 0.953 46 H 0.038 0.962 47 H 0.025 0.975 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.523 -8.599 -15.296 19.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.183 4.183 3 Si 0.762 3.238 4 H -0.194 1.194 5 H -0.218 1.218 6 H -0.199 1.199 7 C -0.539 4.539 8 H 0.073 0.927 9 C 0.019 3.981 10 C -0.139 4.139 11 C -0.127 4.127 12 C -0.007 4.007 13 N -0.250 5.250 14 C -0.077 4.077 15 C -0.071 4.071 16 N -0.201 5.201 17 C -0.086 4.086 18 C -0.051 4.051 19 N -0.228 5.228 20 C -0.038 4.038 21 N -0.225 5.225 22 C -0.074 4.074 23 C -0.056 4.056 24 C -0.077 4.077 25 C -0.154 4.154 26 C -0.139 4.139 27 H 0.064 0.936 28 H 0.003 0.997 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.049 0.951 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.087 0.913 38 H 0.194 0.806 39 H 0.235 0.765 40 H 0.205 0.795 41 H 0.077 0.923 42 H 0.112 0.888 43 H 0.047 0.953 44 H 0.102 0.898 45 H 0.066 0.934 46 H 0.057 0.943 47 H 0.044 0.956 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.934 -8.441 -16.044 20.672 hybrid contribution -0.856 1.513 1.182 2.102 sum 9.078 -6.928 -14.862 18.742 Atomic orbital electron populations 1.70009 1.07103 1.26542 1.52424 1.25589 0.95349 1.01694 0.95668 0.85963 0.78632 0.80372 0.78856 1.19447 1.21836 1.19913 1.21365 0.92695 0.91355 1.48523 0.92744 1.18690 0.93205 0.93255 0.92902 1.21449 0.97722 0.97502 0.97261 1.21361 0.97230 1.01220 0.92883 1.21558 0.92316 0.97370 0.89429 1.62550 1.27831 1.32488 1.02151 1.22232 0.94781 1.02015 0.88687 1.22457 0.97041 0.88482 0.99140 1.59141 1.25253 1.34747 1.01006 1.20825 0.95437 0.96593 0.95781 1.23215 0.91017 0.96427 0.94419 1.68402 1.20358 1.30205 1.03788 1.25333 0.95416 0.84524 0.98550 1.68364 1.06981 1.26550 1.20631 1.23794 0.95918 0.97541 0.90162 1.22329 0.94221 1.02645 0.86383 1.22186 0.96713 0.90954 0.97822 1.21801 0.97767 0.99386 0.96466 1.21302 0.98385 0.98340 0.95850 0.93566 0.99678 0.93099 0.93560 0.91466 0.92710 0.90121 0.95060 0.88324 0.87865 0.91322 0.80581 0.76477 0.79483 0.92293 0.88789 0.95303 0.89762 0.93428 0.94338 0.95584 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.56 11.32 21.45 0.24 -52.31 16 2 C 0.01 0.79 5.30 84.65 0.45 1.24 16 3 Si 0.93 42.71 29.54 68.60 2.03 44.74 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 6 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.50 -25.88 6.61 25.60 0.17 -25.71 16 8 H 0.05 2.75 6.71 -2.91 -0.02 2.73 16 9 C 0.04 1.81 2.59 -11.54 -0.03 1.78 16 10 C -0.10 -3.87 5.41 30.59 0.17 -3.71 16 11 C -0.09 -2.98 4.78 30.59 0.15 -2.84 16 12 C 0.10 3.18 2.23 44.92 0.10 3.28 16 13 N -0.53 -13.84 4.70 -870.50 -4.09 -17.93 16 14 C 0.05 1.13 5.25 86.31 0.45 1.59 16 15 C 0.06 0.97 4.32 86.31 0.37 1.34 16 16 N -0.49 -9.94 4.77 -694.02 -3.31 -13.25 16 17 C 0.02 0.33 5.66 38.37 0.22 0.55 16 18 C 0.12 2.42 10.49 84.87 0.89 3.31 16 19 N -0.51 -11.00 10.43 -199.57 -2.08 -13.08 16 20 C 0.25 4.71 12.28 180.89 2.22 6.93 16 21 N -0.51 -10.34 10.43 -199.56 -2.08 -12.42 16 22 C 0.10 1.74 10.09 84.87 0.86 2.60 16 23 C 0.07 1.47 5.39 86.31 0.47 1.94 16 24 C 0.05 1.41 4.81 86.31 0.42 1.82 16 25 C -0.12 -4.46 4.28 30.58 0.13 -4.33 16 26 C -0.10 -4.54 5.23 30.58 0.16 -4.38 16 27 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 28 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 29 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.05 2.02 4.84 -2.38 -0.01 2.01 16 33 H 0.08 2.40 8.11 -2.39 -0.02 2.39 16 34 H 0.03 0.83 6.60 -2.39 -0.02 0.81 16 35 H 0.10 1.88 8.12 -2.39 -0.02 1.86 16 36 H 0.10 1.45 7.22 -2.39 -0.02 1.43 16 37 H 0.07 1.08 7.63 -2.39 -0.02 1.06 16 38 H 0.18 3.13 7.28 -2.91 -0.02 3.11 16 39 H 0.22 2.65 8.06 -2.91 -0.02 2.63 16 40 H 0.19 2.53 5.98 -2.91 -0.02 2.51 16 41 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.09 1.79 6.91 -2.39 -0.02 1.78 16 43 H 0.03 0.94 6.46 -2.39 -0.02 0.93 16 44 H 0.08 2.43 6.17 -2.39 -0.01 2.41 16 45 H 0.05 2.11 5.53 -2.38 -0.01 2.09 16 46 H 0.04 1.41 6.59 -2.39 -0.02 1.39 16 47 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.05 2.76 6.07 -2.39 -0.01 2.75 16 Total: -1.00 -61.02 352.66 -1.15 -62.17 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 0.96 Total: 16.67 kcal Atomic # 6 Polarization: -21.77 SS G_CDS: 7.18 Total: -14.59 kcal Atomic # 7 Polarization: -97.68 SS G_CDS: -11.32 Total: -109.00 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -61.02 -1.15 -62.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173337052.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.612 kcal (2) G-P(sol) polarization free energy of solvation -61.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds