Wall clock time and date at job start Tue Mar 31 2020 11:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99651 * 2 1 4 4 H 1.48498 * 109.46935 * 270.00201 * 3 2 1 5 5 H 1.48506 * 109.47027 * 29.99953 * 3 2 1 6 6 H 1.48491 * 109.47063 * 149.99661 * 3 2 1 7 7 C 1.37871 * 120.00225 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99684 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00300 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47311 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47331 * 300.00213 * 10 9 7 12 12 C 1.53002 * 109.47310 * 300.00139 * 11 10 9 13 13 N 1.46892 * 109.47434 * 179.97438 * 12 11 10 14 14 C 1.46954 * 111.00212 * 174.99759 * 13 12 11 15 15 C 1.53058 * 109.36730 * 183.19197 * 14 13 12 16 16 N 1.46953 * 109.35926 * 301.59842 * 15 14 13 17 17 C 1.38543 * 110.99897 * 183.18517 * 16 15 14 18 18 C 1.39662 * 120.53715 * 180.02562 * 17 16 15 19 19 C 1.38075 * 118.33774 * 179.97438 * 18 17 16 20 20 N 1.32574 * 119.19616 * 359.73193 * 19 18 17 21 21 C 1.31760 * 121.01643 * 0.54715 * 20 19 18 22 22 N 1.31782 * 121.82877 * 359.43894 * 21 20 19 23 23 C 1.46961 * 110.88343 * 59.32440 * 16 15 14 24 24 C 1.46954 * 111.00342 * 298.79838 * 13 12 11 25 25 C 1.53003 * 109.47037 * 59.99681 * 12 11 10 26 26 C 1.52997 * 109.47331 * 300.00306 * 25 12 11 27 27 H 0.96991 * 120.00609 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47319 * 300.00126 * 9 7 2 29 29 H 1.08998 * 109.47284 * 180.02562 * 10 9 7 30 30 H 1.08999 * 109.46907 * 60.00296 * 10 9 7 31 31 H 1.08999 * 109.47314 * 179.97438 * 11 10 9 32 32 H 1.09006 * 109.47271 * 59.99792 * 11 10 9 33 33 H 1.09006 * 109.46670 * 300.00021 * 12 11 10 34 34 H 1.08995 * 109.48747 * 63.22259 * 14 13 12 35 35 H 1.09009 * 109.48802 * 303.15487 * 14 13 12 36 36 H 1.08993 * 109.49061 * 181.63141 * 15 14 13 37 37 H 1.09003 * 109.48542 * 61.56212 * 15 14 13 38 38 H 1.08000 * 120.82861 * 359.97438 * 18 17 16 39 39 H 1.07998 * 120.39865 * 180.02562 * 19 18 17 40 40 H 1.08002 * 119.08896 * 179.72121 * 21 20 19 41 41 H 1.08995 * 109.49013 * 60.64175 * 23 16 15 42 42 H 1.08995 * 109.48942 * 180.71185 * 23 16 15 43 43 H 1.09000 * 109.49198 * 296.77914 * 24 13 12 44 44 H 1.09007 * 109.48841 * 56.84115 * 24 13 12 45 45 H 1.08998 * 109.47284 * 60.00295 * 25 12 11 46 46 H 1.08999 * 109.46907 * 180.02562 * 25 12 11 47 47 H 1.09006 * 109.47271 * 300.00208 * 26 25 12 48 48 H 1.08999 * 109.47314 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.7001 6 1 3.5465 1.4404 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0018 11 6 3.1242 -3.5804 -1.2516 12 6 2.2437 -3.6608 -2.5003 13 7 3.0873 -3.5818 -3.7003 14 6 2.2890 -3.7749 -4.9189 15 6 3.2139 -3.7650 -6.1384 16 7 3.9431 -2.4901 -6.1864 17 6 4.7388 -2.4156 -7.3181 18 6 5.5210 -1.2847 -7.5625 19 6 6.2973 -1.2589 -8.7040 20 7 6.2795 -2.3021 -9.5219 21 6 5.5265 -3.3526 -9.2661 22 7 4.7704 -3.4200 -8.1889 23 6 4.7415 -2.2971 -4.9678 24 6 3.8166 -2.3070 -3.7484 25 6 1.2494 -2.4980 -2.4990 26 6 0.3707 -2.5796 -1.2492 27 1 -0.4850 0.8399 0.0004 28 1 0.6249 -2.5571 0.8897 29 1 1.7006 -4.6060 -0.0023 30 1 2.8728 -3.6046 0.8877 31 1 3.8329 -4.4085 -1.2523 32 1 3.6692 -2.6363 -1.2517 33 1 1.6987 -4.6049 -2.5003 34 1 1.5609 -2.9687 -5.0082 35 1 1.7685 -4.7312 -4.8650 36 1 2.6207 -3.8791 -7.0456 37 1 3.9246 -4.5879 -6.0624 38 1 5.5186 -0.4512 -6.8757 39 1 6.9151 -0.4012 -8.9254 40 1 5.5325 -4.1835 -9.9561 41 1 5.4696 -3.1033 -4.8786 42 1 5.2619 -1.3409 -5.0217 43 1 3.1059 -1.4840 -3.8244 44 1 4.4099 -2.1929 -2.8411 45 1 1.7943 -1.5540 -2.4990 46 1 0.6218 -2.5556 -3.3884 47 1 -0.1743 -3.5236 -1.2492 48 1 -0.3380 -1.7514 -1.2485 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173337594.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:40 Heat of formation + Delta-G solvation = 61.864309 kcal Electronic energy + Delta-G solvation = -27471.450979 eV Core-core repulsion = 23947.225310 eV Total energy + Delta-G solvation = -3524.225669 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.38626 -39.62308 -37.72564 -35.19028 -33.29287 -32.37314 -31.39399 -30.97010 -29.56856 -28.80435 -26.12733 -25.01450 -24.50036 -23.29591 -23.04004 -21.66946 -20.79868 -19.56486 -18.43920 -18.02371 -17.57001 -15.87158 -15.77664 -15.62717 -15.30952 -14.89911 -14.78695 -14.69343 -14.45236 -14.15757 -13.83678 -13.61497 -13.52488 -13.17150 -12.74897 -12.28917 -11.89507 -11.62314 -11.47634 -11.26711 -11.20772 -11.08708 -11.00699 -10.88702 -10.81017 -10.71631 -10.58239 -10.18776 -10.13137 -9.96512 -9.73049 -9.45317 -9.18496 -8.96434 -8.67322 -8.62157 -8.31288 -7.79760 -5.97976 -4.02592 0.77751 0.91674 3.18506 3.26439 3.34962 3.36661 3.64499 3.99811 4.06441 4.16342 4.42044 4.57010 4.84146 4.91244 5.04079 5.13602 5.25126 5.31183 5.32491 5.39517 5.43846 5.50862 5.59816 5.74466 5.81012 5.90945 6.02346 6.03935 6.10963 6.18160 6.31395 6.34341 6.41675 6.51532 6.52166 6.71146 6.75623 6.83418 6.85712 6.96763 7.05160 7.13286 7.32057 7.44621 7.47002 7.58171 7.74013 7.93926 7.95262 8.15430 8.47912 9.00032 9.60604 11.07753 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.017531 B = 0.003538 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.785950 B = 7911.954788 C = 8878.905921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.881 3.119 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.500 4.500 8 H 0.054 0.946 9 C 0.043 3.957 10 C -0.106 4.106 11 C -0.097 4.097 12 C 0.091 3.909 13 N -0.536 5.536 14 C 0.049 3.951 15 C 0.072 3.928 16 N -0.474 5.474 17 C 0.363 3.637 18 C -0.245 4.245 19 C 0.160 3.840 20 N -0.549 5.549 21 C 0.318 3.682 22 N -0.558 5.558 23 C 0.066 3.934 24 C 0.049 3.951 25 C -0.129 4.129 26 C -0.104 4.104 27 H 0.258 0.742 28 H 0.023 0.977 29 H 0.033 0.967 30 H 0.047 0.953 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.048 0.952 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.060 0.940 38 H 0.147 0.853 39 H 0.167 0.833 40 H 0.194 0.806 41 H 0.055 0.945 42 H 0.086 0.914 43 H 0.056 0.944 44 H 0.094 0.906 45 H 0.074 0.926 46 H 0.031 0.969 47 H 0.012 0.988 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.231 -5.563 -14.019 17.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.709 3.291 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.538 4.538 8 H 0.072 0.928 9 C 0.025 3.975 10 C -0.145 4.145 11 C -0.134 4.134 12 C -0.016 4.016 13 N -0.259 5.259 14 C -0.079 4.079 15 C -0.054 4.054 16 N -0.190 5.190 17 C 0.122 3.878 18 C -0.270 4.270 19 C -0.002 4.002 20 N -0.266 5.266 21 C 0.029 3.971 22 N -0.279 5.279 23 C -0.060 4.060 24 C -0.079 4.079 25 C -0.168 4.168 26 C -0.142 4.142 27 H 0.068 0.932 28 H 0.041 0.959 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.078 0.922 38 H 0.165 0.835 39 H 0.184 0.816 40 H 0.210 0.790 41 H 0.074 0.926 42 H 0.105 0.895 43 H 0.074 0.926 44 H 0.112 0.888 45 H 0.093 0.907 46 H 0.050 0.950 47 H 0.031 0.969 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.056 -6.200 -14.541 18.218 hybrid contribution 0.150 1.892 0.449 1.950 sum 9.206 -4.308 -14.092 17.375 Atomic orbital electron populations 1.69862 1.05821 1.26144 1.51146 1.24931 0.94725 0.98725 0.95534 0.86769 0.80048 0.84243 0.78021 1.20835 1.21358 1.19976 1.21130 0.92626 0.90430 1.49621 0.92779 1.18692 0.92708 0.92123 0.94006 1.21545 0.98276 0.98605 0.96028 1.21458 0.97331 1.01082 0.93575 1.21732 0.92906 0.98466 0.88509 1.62522 1.28480 1.32582 1.02363 1.22225 0.94939 1.01768 0.88999 1.22124 0.96770 0.87807 0.98741 1.59015 1.24029 1.34905 1.01084 1.20217 0.86784 0.89179 0.91605 1.22413 1.02009 1.00447 1.02166 1.23004 0.93177 0.95754 0.88309 1.68418 1.23311 1.02273 1.32569 1.24772 0.86273 0.94949 0.91143 1.68431 1.24472 1.28594 1.06418 1.22440 0.94879 1.01969 0.86711 1.22251 0.96999 0.92090 0.96550 1.21984 0.97786 0.99178 0.97828 1.21453 0.98663 0.99284 0.94844 0.93183 0.95864 0.94810 0.93436 0.93830 0.91170 0.91298 0.93423 0.90026 0.89541 0.92190 0.83489 0.81609 0.78976 0.92631 0.89545 0.92603 0.88765 0.90733 0.95034 0.96878 0.89249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.66 11.32 55.43 0.63 -24.03 16 2 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 3 Si 0.88 20.53 29.54 -169.99 -5.02 15.51 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.50 -12.75 6.61 -34.44 -0.23 -12.97 16 8 H 0.05 1.37 6.71 -52.48 -0.35 1.02 16 9 C 0.04 1.02 2.59 -91.77 -0.24 0.78 16 10 C -0.11 -2.11 5.41 -26.73 -0.14 -2.26 16 11 C -0.10 -1.73 4.78 -26.73 -0.13 -1.86 16 12 C 0.09 1.56 2.23 -67.71 -0.15 1.41 16 13 N -0.54 -8.07 4.70 -226.48 -1.06 -9.13 16 14 C 0.05 0.68 5.25 -3.76 -0.02 0.66 16 15 C 0.07 0.92 4.80 -3.77 -0.02 0.90 16 16 N -0.47 -6.11 4.74 -172.86 -0.82 -6.93 16 17 C 0.36 4.48 6.41 -154.78 -0.99 3.49 16 18 C -0.25 -2.53 9.30 -39.11 -0.36 -2.90 16 19 C 0.16 1.51 11.29 -17.29 -0.20 1.32 16 20 N -0.55 -5.98 10.43 -14.67 -0.15 -6.13 16 21 C 0.32 3.36 12.28 -92.19 -1.13 2.23 16 22 N -0.56 -6.85 8.87 -13.81 -0.12 -6.97 16 23 C 0.07 0.81 5.37 -3.76 -0.02 0.79 16 24 C 0.05 0.72 4.81 -3.77 -0.02 0.71 16 25 C -0.13 -2.56 4.28 -26.73 -0.11 -2.67 16 26 C -0.10 -2.35 5.23 -26.73 -0.14 -2.49 16 27 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 28 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 1.34 4.84 -51.93 -0.25 1.09 16 33 H 0.07 1.18 8.11 -51.93 -0.42 0.76 16 34 H 0.05 0.72 6.60 -51.93 -0.34 0.38 16 35 H 0.08 1.04 8.12 -51.92 -0.42 0.62 16 36 H 0.09 1.09 7.84 -51.93 -0.41 0.68 16 37 H 0.06 0.80 8.07 -51.93 -0.42 0.38 16 38 H 0.15 1.28 7.26 -52.49 -0.38 0.90 16 39 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.19 1.40 8.06 -52.49 -0.42 0.98 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 0.92 6.86 -51.93 -0.36 0.56 16 43 H 0.06 0.93 6.46 -51.93 -0.34 0.60 16 44 H 0.09 1.41 6.17 -51.93 -0.32 1.09 16 45 H 0.07 1.65 5.53 -51.93 -0.29 1.36 16 46 H 0.03 0.60 6.59 -51.93 -0.34 0.25 16 47 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 48 H 0.09 2.31 6.07 -51.93 -0.32 1.99 16 LS Contribution 355.38 15.07 5.36 5.36 Total: -1.00 -28.28 355.38 -12.66 -40.95 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -7.47 Total: 2.71 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -4.00 Total: -11.33 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: -1.53 Total: -53.20 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.28 -12.66 -40.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173337594.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.813 kcal (2) G-P(sol) polarization free energy of solvation -28.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds