Wall clock time and date at job start Tue Mar 31 2020 11:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99651 * 2 1 4 4 H 1.48498 * 109.46935 * 270.00201 * 3 2 1 5 5 H 1.48506 * 109.47027 * 29.99953 * 3 2 1 6 6 H 1.48491 * 109.47063 * 149.99661 * 3 2 1 7 7 C 1.37871 * 120.00225 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99684 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00300 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47311 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47331 * 300.00213 * 10 9 7 12 12 C 1.53002 * 109.47310 * 300.00139 * 11 10 9 13 13 N 1.46892 * 109.47434 * 179.97438 * 12 11 10 14 14 C 1.46954 * 111.00212 * 174.99759 * 13 12 11 15 15 C 1.53058 * 109.36730 * 183.19197 * 14 13 12 16 16 N 1.46953 * 109.35926 * 301.59842 * 15 14 13 17 17 C 1.38543 * 110.99897 * 183.18517 * 16 15 14 18 18 C 1.39662 * 120.53715 * 180.02562 * 17 16 15 19 19 C 1.38075 * 118.33774 * 179.97438 * 18 17 16 20 20 N 1.32574 * 119.19616 * 359.73193 * 19 18 17 21 21 C 1.31760 * 121.01643 * 0.54715 * 20 19 18 22 22 N 1.31782 * 121.82877 * 359.43894 * 21 20 19 23 23 C 1.46961 * 110.88343 * 59.32440 * 16 15 14 24 24 C 1.46954 * 111.00342 * 298.79838 * 13 12 11 25 25 C 1.53003 * 109.47037 * 59.99681 * 12 11 10 26 26 C 1.52997 * 109.47331 * 300.00306 * 25 12 11 27 27 H 0.96991 * 120.00609 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47319 * 300.00126 * 9 7 2 29 29 H 1.08998 * 109.47284 * 180.02562 * 10 9 7 30 30 H 1.08999 * 109.46907 * 60.00296 * 10 9 7 31 31 H 1.08999 * 109.47314 * 179.97438 * 11 10 9 32 32 H 1.09006 * 109.47271 * 59.99792 * 11 10 9 33 33 H 1.09006 * 109.46670 * 300.00021 * 12 11 10 34 34 H 1.08995 * 109.48747 * 63.22259 * 14 13 12 35 35 H 1.09009 * 109.48802 * 303.15487 * 14 13 12 36 36 H 1.08993 * 109.49061 * 181.63141 * 15 14 13 37 37 H 1.09003 * 109.48542 * 61.56212 * 15 14 13 38 38 H 1.08000 * 120.82861 * 359.97438 * 18 17 16 39 39 H 1.07998 * 120.39865 * 180.02562 * 19 18 17 40 40 H 1.08002 * 119.08896 * 179.72121 * 21 20 19 41 41 H 1.08995 * 109.49013 * 60.64175 * 23 16 15 42 42 H 1.08995 * 109.48942 * 180.71185 * 23 16 15 43 43 H 1.09000 * 109.49198 * 296.77914 * 24 13 12 44 44 H 1.09007 * 109.48841 * 56.84115 * 24 13 12 45 45 H 1.08998 * 109.47284 * 60.00295 * 25 12 11 46 46 H 1.08999 * 109.46907 * 180.02562 * 25 12 11 47 47 H 1.09006 * 109.47271 * 300.00208 * 26 25 12 48 48 H 1.08999 * 109.47314 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.7001 6 1 3.5465 1.4404 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0018 11 6 3.1242 -3.5804 -1.2516 12 6 2.2437 -3.6608 -2.5003 13 7 3.0873 -3.5818 -3.7003 14 6 2.2890 -3.7749 -4.9189 15 6 3.2139 -3.7650 -6.1384 16 7 3.9431 -2.4901 -6.1864 17 6 4.7388 -2.4156 -7.3181 18 6 5.5210 -1.2847 -7.5625 19 6 6.2973 -1.2589 -8.7040 20 7 6.2795 -2.3021 -9.5219 21 6 5.5265 -3.3526 -9.2661 22 7 4.7704 -3.4200 -8.1889 23 6 4.7415 -2.2971 -4.9678 24 6 3.8166 -2.3070 -3.7484 25 6 1.2494 -2.4980 -2.4990 26 6 0.3707 -2.5796 -1.2492 27 1 -0.4850 0.8399 0.0004 28 1 0.6249 -2.5571 0.8897 29 1 1.7006 -4.6060 -0.0023 30 1 2.8728 -3.6046 0.8877 31 1 3.8329 -4.4085 -1.2523 32 1 3.6692 -2.6363 -1.2517 33 1 1.6987 -4.6049 -2.5003 34 1 1.5609 -2.9687 -5.0082 35 1 1.7685 -4.7312 -4.8650 36 1 2.6207 -3.8791 -7.0456 37 1 3.9246 -4.5879 -6.0624 38 1 5.5186 -0.4512 -6.8757 39 1 6.9151 -0.4012 -8.9254 40 1 5.5325 -4.1835 -9.9561 41 1 5.4696 -3.1033 -4.8786 42 1 5.2619 -1.3409 -5.0217 43 1 3.1059 -1.4840 -3.8244 44 1 4.4099 -2.1929 -2.8411 45 1 1.7943 -1.5540 -2.4990 46 1 0.6218 -2.5556 -3.3884 47 1 -0.1743 -3.5236 -1.2492 48 1 -0.3380 -1.7514 -1.2485 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173337594.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:39 Heat of formation + Delta-G solvation = 46.208361 kcal Electronic energy + Delta-G solvation = -27472.129872 eV Core-core repulsion = 23947.225310 eV Total energy + Delta-G solvation = -3524.904562 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.23667 -40.83599 -39.02745 -36.53495 -34.34261 -33.91709 -32.51465 -32.03132 -31.19090 -30.24763 -27.51116 -26.33590 -25.81203 -24.27761 -24.04200 -23.19703 -22.21749 -20.96234 -19.99183 -18.93983 -18.40938 -17.70220 -16.97848 -16.59937 -16.48981 -16.28158 -15.90387 -15.83208 -15.71975 -15.27942 -14.98781 -14.93229 -14.72963 -14.51610 -14.37242 -13.67004 -13.27123 -13.21886 -12.91116 -12.86346 -12.59026 -12.47174 -12.41183 -12.33041 -12.15129 -11.94407 -11.85507 -11.70766 -11.47441 -11.43622 -10.97608 -10.90429 -10.69852 -10.49498 -10.30452 -10.26892 -9.53948 -9.13923 -8.01309 -6.11313 -0.01067 0.12416 1.39852 1.42800 1.50468 2.29708 2.46125 2.84033 2.93877 3.23879 3.27191 3.36215 3.70565 3.86879 3.90081 4.10673 4.17906 4.21821 4.23448 4.28450 4.34560 4.47102 4.49481 4.51608 4.69068 4.71612 4.75724 4.77388 4.82249 4.90157 4.91882 4.94135 5.00919 5.08168 5.13400 5.27464 5.30955 5.44168 5.45409 5.54878 5.66477 5.67789 5.74302 5.90743 5.96129 6.13723 6.18390 6.20566 6.24744 6.48235 6.99301 7.16289 7.54699 9.03251 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.017531 B = 0.003538 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.785950 B = 7911.954788 C = 8878.905921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.013 3.987 3 Si 0.937 3.063 4 H -0.277 1.277 5 H -0.292 1.292 6 H -0.266 1.266 7 C -0.500 4.500 8 H 0.056 0.944 9 C 0.038 3.962 10 C -0.101 4.101 11 C -0.089 4.089 12 C 0.101 3.899 13 N -0.529 5.529 14 C 0.052 3.948 15 C 0.084 3.916 16 N -0.484 5.484 17 C 0.343 3.657 18 C -0.247 4.247 19 C 0.163 3.837 20 N -0.561 5.561 21 C 0.312 3.688 22 N -0.576 5.576 23 C 0.074 3.926 24 C 0.052 3.948 25 C -0.115 4.115 26 C -0.100 4.100 27 H 0.255 0.745 28 H -0.014 1.014 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.031 0.969 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.057 0.943 38 H 0.162 0.838 39 H 0.200 0.800 40 H 0.219 0.781 41 H 0.057 0.943 42 H 0.104 0.896 43 H 0.032 0.968 44 H 0.091 0.909 45 H 0.049 0.951 46 H 0.036 0.964 47 H 0.024 0.976 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.373 -6.026 -15.545 20.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.184 4.184 3 Si 0.764 3.236 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.190 1.190 7 C -0.538 4.538 8 H 0.074 0.926 9 C 0.020 3.980 10 C -0.139 4.139 11 C -0.126 4.126 12 C -0.007 4.007 13 N -0.252 5.252 14 C -0.077 4.077 15 C -0.043 4.043 16 N -0.202 5.202 17 C 0.103 3.897 18 C -0.272 4.272 19 C 0.000 4.000 20 N -0.278 5.278 21 C 0.023 3.977 22 N -0.297 5.297 23 C -0.051 4.051 24 C -0.077 4.077 25 C -0.154 4.154 26 C -0.139 4.139 27 H 0.064 0.936 28 H 0.004 0.996 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.050 0.950 35 H 0.113 0.887 36 H 0.106 0.894 37 H 0.075 0.925 38 H 0.180 0.820 39 H 0.216 0.784 40 H 0.235 0.765 41 H 0.075 0.925 42 H 0.123 0.877 43 H 0.050 0.950 44 H 0.109 0.891 45 H 0.068 0.932 46 H 0.054 0.946 47 H 0.043 0.957 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.218 -6.671 -16.078 20.709 hybrid contribution -0.525 2.030 0.898 2.280 sum 10.693 -4.641 -15.181 19.140 Atomic orbital electron populations 1.70019 1.07158 1.26484 1.52495 1.25612 0.95359 1.01785 0.95662 0.85874 0.79081 0.80603 0.78088 1.20322 1.21813 1.19042 1.21395 0.92749 0.91284 1.48406 0.92614 1.18693 0.93192 0.93324 0.92838 1.21450 0.97729 0.97491 0.97243 1.21362 0.97208 1.01327 0.92750 1.21570 0.92374 0.97374 0.89386 1.62545 1.27898 1.32679 1.02060 1.22261 0.94799 1.01787 0.88831 1.21963 0.96407 0.87929 0.98018 1.59048 1.24646 1.34932 1.01534 1.20374 0.87628 0.90130 0.91543 1.22620 1.01599 1.00199 1.02805 1.23568 0.92749 0.96195 0.87475 1.68498 1.23500 1.02772 1.33028 1.25312 0.85666 0.95681 0.91060 1.68421 1.25185 1.29037 1.07028 1.22353 0.94128 1.03040 0.85586 1.22215 0.96747 0.90958 0.97754 1.21808 0.97763 0.99384 0.96464 1.21313 0.98380 0.98319 0.95842 0.93585 0.99615 0.93202 0.93391 0.91495 0.92462 0.90342 0.95045 0.88733 0.89446 0.92498 0.82032 0.78367 0.76501 0.92478 0.87742 0.94982 0.89088 0.93216 0.94555 0.95704 0.92901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.69 11.32 21.45 0.24 -52.45 16 2 C 0.01 0.72 5.30 84.65 0.45 1.17 16 3 Si 0.94 42.55 29.54 68.60 2.03 44.57 16 4 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.50 -25.85 6.61 25.60 0.17 -25.68 16 8 H 0.06 2.81 6.71 -2.91 -0.02 2.80 16 9 C 0.04 1.83 2.59 -11.54 -0.03 1.80 16 10 C -0.10 -3.92 5.41 30.59 0.17 -3.75 16 11 C -0.09 -3.03 4.78 30.59 0.15 -2.89 16 12 C 0.10 3.32 2.23 44.92 0.10 3.42 16 13 N -0.53 -15.13 4.70 -870.46 -4.09 -19.22 16 14 C 0.05 1.35 5.25 86.31 0.45 1.80 16 15 C 0.08 2.02 4.80 86.31 0.41 2.44 16 16 N -0.48 -11.82 4.74 -700.80 -3.32 -15.13 16 17 C 0.34 7.88 6.41 133.18 0.85 8.73 16 18 C -0.25 -4.53 9.30 22.58 0.21 -4.32 16 19 C 0.16 2.63 11.29 84.54 0.95 3.58 16 20 N -0.56 -10.91 10.43 -200.33 -2.09 -13.00 16 21 C 0.31 5.97 12.28 180.90 2.22 8.20 16 22 N -0.58 -13.17 8.87 -197.60 -1.75 -14.92 16 23 C 0.07 1.71 5.37 86.31 0.46 2.17 16 24 C 0.05 1.46 4.81 86.31 0.42 1.88 16 25 C -0.12 -4.58 4.28 30.59 0.13 -4.45 16 26 C -0.10 -4.60 5.23 30.59 0.16 -4.44 16 27 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 28 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 29 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.06 2.12 4.84 -2.38 -0.01 2.11 16 33 H 0.08 2.49 8.11 -2.38 -0.02 2.47 16 34 H 0.03 0.94 6.60 -2.39 -0.02 0.92 16 35 H 0.09 2.23 8.12 -2.38 -0.02 2.21 16 36 H 0.09 2.10 7.84 -2.39 -0.02 2.08 16 37 H 0.06 1.42 8.07 -2.39 -0.02 1.40 16 38 H 0.16 2.39 7.26 -2.91 -0.02 2.37 16 39 H 0.20 1.73 8.06 -2.91 -0.02 1.70 16 40 H 0.22 2.70 8.06 -2.91 -0.02 2.68 16 41 H 0.06 1.30 8.14 -2.39 -0.02 1.29 16 42 H 0.10 1.99 6.86 -2.39 -0.02 1.98 16 43 H 0.03 1.07 6.46 -2.39 -0.02 1.05 16 44 H 0.09 2.63 6.17 -2.38 -0.01 2.61 16 45 H 0.05 2.23 5.53 -2.39 -0.01 2.22 16 46 H 0.04 1.38 6.59 -2.39 -0.02 1.37 16 47 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 48 H 0.05 2.83 6.07 -2.39 -0.01 2.82 16 Total: -1.00 -61.75 355.38 -0.75 -62.51 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.95 Total: 17.99 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: 7.28 Total: -10.35 kcal Atomic # 7 Polarization: -103.71 SS G_CDS: -11.01 Total: -114.72 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Total: -61.75 -0.75 -62.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173337594.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.714 kcal (2) G-P(sol) polarization free energy of solvation -61.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds