Wall clock time and date at job start Tue Mar 31 2020 11:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 119.99985 * 2 1 4 4 H 1.48496 * 109.47217 * 265.00424 * 3 2 1 5 5 H 1.48503 * 109.46610 * 25.00274 * 3 2 1 6 6 H 1.48493 * 109.47083 * 145.00029 * 3 2 1 7 7 C 1.37874 * 120.00393 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00447 * 186.21522 * 7 2 1 9 9 C 1.50703 * 119.99674 * 6.21067 * 7 2 1 10 10 C 1.52999 * 109.47123 * 185.08698 * 9 7 2 11 11 C 1.52998 * 109.47397 * 179.97438 * 10 9 7 12 12 C 1.53008 * 109.47031 * 59.99818 * 11 10 9 13 13 N 1.46497 * 109.46799 * 60.00088 * 12 11 10 14 14 C 1.36221 * 120.13993 * 13.09260 * 13 12 11 15 15 C 1.35712 * 119.26223 * 179.76005 * 14 13 12 16 16 C 1.40078 * 119.51757 * 0.51284 * 15 14 13 17 17 C 1.50697 * 119.87183 * 179.76242 * 16 15 14 18 18 H 1.09007 * 110.01331 * 4.38357 * 17 16 15 19 19 C 1.54315 * 109.89008 * 125.50015 * 17 16 15 20 20 C 1.55430 * 103.04666 * 141.69115 * 19 17 16 21 21 C 1.54914 * 101.51813 * 324.36469 * 20 19 17 22 22 N 1.47440 * 109.88821 * 243.27009 * 17 16 15 23 23 N 1.31380 * 120.25016 * 359.48331 * 16 15 14 24 24 C 1.34334 * 120.77469 * 0.25738 * 23 16 15 25 25 N 1.31437 * 119.76678 * 179.97438 * 24 23 16 26 26 C 1.52998 * 109.46812 * 300.00237 * 12 11 10 27 27 C 1.52998 * 109.47516 * 60.00060 * 26 12 11 28 28 H 0.97006 * 120.00538 * 359.97438 * 1 2 3 29 29 H 1.09006 * 109.47335 * 305.08303 * 9 7 2 30 30 H 1.09007 * 109.47495 * 59.99991 * 10 9 7 31 31 H 1.09000 * 109.46925 * 299.99631 * 10 9 7 32 32 H 1.08994 * 109.47217 * 300.00173 * 11 10 9 33 33 H 1.08999 * 109.47218 * 179.97438 * 11 10 9 34 34 H 1.08991 * 109.46920 * 179.97438 * 12 11 10 35 35 H 1.08007 * 120.36663 * 0.02888 * 14 13 12 36 36 H 1.07989 * 120.24288 * 180.27504 * 15 14 13 37 37 H 1.09003 * 110.70605 * 260.07212 * 19 17 16 38 38 H 1.08996 * 110.70427 * 23.13016 * 19 17 16 39 39 H 1.09005 * 111.10385 * 206.30259 * 20 19 17 40 40 H 1.08994 * 111.00156 * 82.39043 * 20 19 17 41 41 H 1.08997 * 110.37137 * 278.17737 * 21 20 19 42 42 H 1.09002 * 110.36973 * 155.94941 * 21 20 19 43 43 H 1.00899 * 111.00045 * 3.85570 * 22 17 16 44 44 H 0.97007 * 120.00212 * 0.02562 * 25 24 23 45 45 H 1.09004 * 109.46642 * 179.97438 * 26 12 11 46 46 H 1.08994 * 109.47326 * 299.99578 * 26 12 11 47 47 H 1.08999 * 109.47218 * 179.97438 * 27 26 12 48 48 H 1.09000 * 109.47633 * 59.99481 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6022 1.9855 -1.3947 5 1 1.3976 2.6808 0.5918 6 1 3.4898 1.4730 0.8030 7 6 2.0045 -1.1940 -0.0005 8 1 3.0798 -1.1968 0.1007 9 6 1.2577 -2.4952 -0.1423 10 6 2.2336 -3.6631 0.0142 11 6 1.4753 -4.9842 -0.1291 12 6 0.8199 -5.0488 -1.5101 13 7 1.8530 -4.9640 -2.5453 14 6 3.1660 -5.1153 -2.2153 15 6 4.1079 -5.0382 -3.1893 16 6 3.7151 -4.7943 -4.5115 17 6 4.7548 -4.7018 -5.5985 18 1 5.7410 -4.9250 -5.1914 19 6 4.4184 -5.6928 -6.7325 20 6 4.7999 -4.9015 -8.0147 21 6 4.4015 -3.4581 -7.6175 22 7 4.7487 -3.3489 -6.1846 23 7 2.4433 -4.6512 -4.8085 24 6 1.5015 -4.7307 -3.8540 25 7 0.2349 -4.5841 -4.1731 26 6 -0.1560 -3.8809 -1.6666 27 6 0.6023 -2.5598 -1.5233 28 1 -0.4851 0.8401 0.0004 29 1 0.4887 -2.5586 0.6277 30 1 2.7002 -3.6173 0.9983 31 1 3.0025 -3.5997 -0.7558 32 1 0.7067 -5.0473 0.6411 33 1 2.1707 -5.8162 -0.0180 34 1 0.2801 -5.9901 -1.6124 35 1 3.4538 -5.2989 -1.1906 36 1 5.1530 -5.1602 -2.9461 37 1 5.0201 -6.5975 -6.6449 38 1 3.3560 -5.9364 -6.7288 39 1 4.2223 -5.2436 -8.8735 40 1 5.8695 -4.9709 -8.2128 41 1 3.3318 -3.3066 -7.7615 42 1 4.9688 -2.7336 -8.2017 43 1 4.0992 -2.7478 -5.7000 44 1 -0.0170 -4.4195 -5.0954 45 1 -0.6226 -3.9268 -2.6507 46 1 -0.9247 -3.9441 -0.8964 47 1 -0.0930 -1.7279 -1.6352 48 1 1.3710 -2.4966 -2.2935 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173339404.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:22 Heat of formation + Delta-G solvation = 74.414719 kcal Electronic energy + Delta-G solvation = -27893.551592 eV Core-core repulsion = 24369.870150 eV Total energy + Delta-G solvation = -3523.681443 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.33422 -38.99932 -37.31743 -34.34865 -34.22608 -32.34732 -30.37473 -30.18232 -29.77819 -29.44215 -28.40522 -25.06385 -24.09513 -22.76839 -21.66478 -21.24867 -21.11995 -20.44840 -19.18476 -17.91699 -17.03002 -16.37764 -15.93198 -15.77068 -15.62949 -15.51677 -14.65296 -14.22880 -14.12970 -13.77792 -13.41388 -13.25699 -12.95524 -12.78278 -12.54324 -12.16550 -12.04986 -11.78381 -11.72334 -11.58204 -11.45579 -11.27742 -11.05777 -10.93126 -10.85159 -10.71775 -10.44341 -10.29945 -10.08227 -9.91914 -9.71807 -9.52285 -9.05801 -8.87704 -8.55557 -8.41551 -8.25392 -7.28043 -6.00131 -4.03401 0.92382 1.97325 2.75905 3.31106 3.37720 3.39619 3.86458 4.07966 4.32983 4.44163 4.47791 4.61776 4.70571 4.83005 4.98543 5.08446 5.26890 5.31716 5.32633 5.38254 5.39062 5.45509 5.63568 5.68724 5.75529 5.77737 5.84620 5.90778 5.94188 6.05193 6.10777 6.14009 6.17699 6.36163 6.49036 6.59121 6.68166 6.72440 6.83824 7.00008 7.07717 7.18194 7.22036 7.30984 7.55998 7.74871 7.97459 8.05822 8.13888 8.44345 8.77425 9.00267 9.60631 11.08131 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.013151 B = 0.004463 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.646894 B = 6272.838367 C = 7322.613155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.065 3.935 3 Si 0.885 3.115 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.517 4.517 8 H 0.052 0.948 9 C 0.049 3.951 10 C -0.119 4.119 11 C -0.137 4.137 12 C 0.147 3.853 13 N -0.476 5.476 14 C 0.208 3.792 15 C -0.318 4.318 16 C 0.243 3.757 17 C 0.123 3.877 18 H 0.103 0.897 19 C -0.131 4.131 20 C -0.126 4.126 21 C 0.045 3.955 22 N -0.666 5.666 23 N -0.561 5.561 24 C 0.542 3.458 25 N -0.757 5.757 26 C -0.150 4.150 27 C -0.092 4.092 28 H 0.260 0.740 29 H 0.031 0.969 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.084 0.916 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.177 0.823 36 H 0.147 0.853 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.046 0.954 42 H 0.078 0.922 43 H 0.348 0.652 44 H 0.341 0.659 45 H 0.114 0.886 46 H 0.060 0.940 47 H 0.074 0.926 48 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.626 -13.801 -9.266 18.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.137 4.137 3 Si 0.713 3.287 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.555 4.555 8 H 0.070 0.930 9 C 0.030 3.970 10 C -0.157 4.157 11 C -0.175 4.175 12 C 0.045 3.955 13 N -0.172 5.172 14 C 0.068 3.932 15 C -0.348 4.348 16 C 0.072 3.928 17 C 0.012 3.988 18 H 0.121 0.879 19 C -0.170 4.170 20 C -0.164 4.164 21 C -0.084 4.084 22 N -0.297 5.297 23 N -0.283 5.283 24 C 0.175 3.825 25 N -0.395 5.395 26 C -0.188 4.188 27 C -0.130 4.130 28 H 0.069 0.931 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.103 0.897 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.194 0.806 36 H 0.165 0.835 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.065 0.935 42 H 0.096 0.904 43 H 0.165 0.835 44 H 0.158 0.842 45 H 0.131 0.869 46 H 0.079 0.921 47 H 0.092 0.908 48 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 7.519 -13.474 -9.509 18.125 hybrid contribution 0.293 0.875 0.152 0.935 sum 7.812 -12.599 -9.357 17.530 Atomic orbital electron populations 1.69935 1.05861 1.26447 1.50290 1.24935 0.94758 0.98927 0.95065 0.86729 0.79910 0.83834 0.78260 1.20666 1.21304 1.19993 1.21133 0.93195 0.90941 1.50219 0.93011 1.18675 0.93409 0.91152 0.93734 1.21916 0.99061 0.94305 1.00406 1.22072 1.00747 0.99138 0.95529 1.21571 0.88078 1.00813 0.85030 1.44691 1.06421 1.58072 1.08027 1.22554 0.82670 0.87059 1.00892 1.21051 1.00830 1.20106 0.92838 1.22272 0.92218 0.84546 0.93737 1.21407 0.95561 0.90134 0.91653 0.87935 1.22903 1.02744 0.97817 0.93532 1.22722 1.01603 0.94784 0.97308 1.22840 0.99314 0.97030 0.89225 1.62249 1.55296 1.08972 1.03160 1.69594 1.01310 1.24537 1.32888 1.19981 0.90882 0.91651 0.80004 1.70059 1.10307 1.32994 1.26163 1.22377 0.97307 0.94135 1.05016 1.21390 0.98478 0.94874 0.98276 0.93062 0.95100 0.92603 0.93168 0.89704 0.92756 0.90591 0.80559 0.83495 0.90769 0.90190 0.90864 0.90746 0.93513 0.90388 0.83476 0.84164 0.86884 0.92123 0.90765 0.95630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.68 11.98 55.43 0.66 -25.01 16 2 C 0.06 1.81 5.25 -17.82 -0.09 1.71 16 3 Si 0.88 21.55 29.54 -169.99 -5.02 16.53 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.04 8.49 -34.44 -0.29 -14.33 16 8 H 0.05 1.39 7.75 -52.49 -0.41 0.99 16 9 C 0.05 1.16 1.97 -91.77 -0.18 0.98 16 10 C -0.12 -2.22 4.52 -26.73 -0.12 -2.34 16 11 C -0.14 -2.04 4.89 -26.73 -0.13 -2.17 16 12 C 0.15 2.39 3.17 -67.93 -0.22 2.18 16 13 N -0.48 -7.69 2.19 -111.16 -0.24 -7.93 16 14 C 0.21 2.82 7.78 -16.51 -0.13 2.69 16 15 C -0.32 -3.97 9.68 -39.80 -0.39 -4.36 16 16 C 0.24 3.31 5.34 -82.10 -0.44 2.87 16 17 C 0.12 1.38 3.81 -67.88 -0.26 1.12 16 18 H 0.10 1.00 7.94 -51.93 -0.41 0.59 16 19 C -0.13 -1.30 6.43 -24.75 -0.16 -1.46 16 20 C -0.13 -1.12 7.10 -24.43 -0.17 -1.29 16 21 C 0.04 0.48 7.56 -2.30 -0.02 0.46 16 22 N -0.67 -8.21 7.37 -105.03 -0.77 -8.98 16 23 N -0.56 -9.03 9.66 -10.02 -0.10 -9.13 16 24 C 0.54 9.61 7.56 -323.05 -2.44 7.17 16 25 N -0.76 -14.02 10.41 29.72 0.31 -13.71 16 26 C -0.15 -2.97 5.02 -26.73 -0.13 -3.10 16 27 C -0.09 -2.17 4.85 -26.73 -0.13 -2.30 16 28 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.03 0.82 8.12 -51.93 -0.42 0.39 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.05 0.92 5.18 -51.93 -0.27 0.65 16 32 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.05 0.63 6.86 -51.93 -0.36 0.27 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.18 1.97 5.06 -52.48 -0.27 1.70 16 36 H 0.15 1.39 7.99 -52.49 -0.42 0.97 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.95 7.33 -51.93 -0.38 0.56 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.35 4.94 8.19 -39.29 -0.32 4.62 16 44 H 0.34 6.07 8.90 -40.82 -0.36 5.71 16 45 H 0.11 2.33 5.06 -51.93 -0.26 2.07 16 46 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 47 H 0.07 2.03 6.74 -51.93 -0.35 1.68 16 48 H 0.02 0.63 7.13 -51.93 -0.37 0.26 16 LS Contribution 359.72 15.07 5.42 5.42 Total: -1.00 -30.34 359.72 -12.58 -42.92 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -7.54 Total: 12.05 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -5.30 Total: -12.15 kcal Atomic # 7 Polarization: -64.63 SS G_CDS: -0.14 Total: -64.77 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.34 -12.58 -42.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173339404.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.332 kcal (2) G-P(sol) polarization free energy of solvation -30.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds