Wall clock time and date at job start Tue Mar 31 2020 11:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 119.99985 * 2 1 4 4 H 1.48496 * 109.47217 * 265.00424 * 3 2 1 5 5 H 1.48503 * 109.46610 * 25.00274 * 3 2 1 6 6 H 1.48493 * 109.47083 * 145.00029 * 3 2 1 7 7 C 1.37874 * 120.00393 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00447 * 186.21522 * 7 2 1 9 9 C 1.50703 * 119.99674 * 6.21067 * 7 2 1 10 10 C 1.52999 * 109.47123 * 185.08698 * 9 7 2 11 11 C 1.52998 * 109.47397 * 179.97438 * 10 9 7 12 12 C 1.53008 * 109.47031 * 59.99818 * 11 10 9 13 13 N 1.46497 * 109.46799 * 60.00088 * 12 11 10 14 14 C 1.36221 * 120.13993 * 13.09260 * 13 12 11 15 15 C 1.35712 * 119.26223 * 179.76005 * 14 13 12 16 16 C 1.40078 * 119.51757 * 0.51284 * 15 14 13 17 17 C 1.50697 * 119.87183 * 179.76242 * 16 15 14 18 18 H 1.09007 * 110.01331 * 4.38357 * 17 16 15 19 19 C 1.54315 * 109.89008 * 125.50015 * 17 16 15 20 20 C 1.55430 * 103.04666 * 141.69115 * 19 17 16 21 21 C 1.54914 * 101.51813 * 324.36469 * 20 19 17 22 22 N 1.47440 * 109.88821 * 243.27009 * 17 16 15 23 23 N 1.31380 * 120.25016 * 359.48331 * 16 15 14 24 24 C 1.34334 * 120.77469 * 0.25738 * 23 16 15 25 25 N 1.31437 * 119.76678 * 179.97438 * 24 23 16 26 26 C 1.52998 * 109.46812 * 300.00237 * 12 11 10 27 27 C 1.52998 * 109.47516 * 60.00060 * 26 12 11 28 28 H 0.97006 * 120.00538 * 359.97438 * 1 2 3 29 29 H 1.09006 * 109.47335 * 305.08303 * 9 7 2 30 30 H 1.09007 * 109.47495 * 59.99991 * 10 9 7 31 31 H 1.09000 * 109.46925 * 299.99631 * 10 9 7 32 32 H 1.08994 * 109.47217 * 300.00173 * 11 10 9 33 33 H 1.08999 * 109.47218 * 179.97438 * 11 10 9 34 34 H 1.08991 * 109.46920 * 179.97438 * 12 11 10 35 35 H 1.08007 * 120.36663 * 0.02888 * 14 13 12 36 36 H 1.07989 * 120.24288 * 180.27504 * 15 14 13 37 37 H 1.09003 * 110.70605 * 260.07212 * 19 17 16 38 38 H 1.08996 * 110.70427 * 23.13016 * 19 17 16 39 39 H 1.09005 * 111.10385 * 206.30259 * 20 19 17 40 40 H 1.08994 * 111.00156 * 82.39043 * 20 19 17 41 41 H 1.08997 * 110.37137 * 278.17737 * 21 20 19 42 42 H 1.09002 * 110.36973 * 155.94941 * 21 20 19 43 43 H 1.00899 * 111.00045 * 3.85570 * 22 17 16 44 44 H 0.97007 * 120.00212 * 0.02562 * 25 24 23 45 45 H 1.09004 * 109.46642 * 179.97438 * 26 12 11 46 46 H 1.08994 * 109.47326 * 299.99578 * 26 12 11 47 47 H 1.08999 * 109.47218 * 179.97438 * 27 26 12 48 48 H 1.09000 * 109.47633 * 59.99481 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6022 1.9855 -1.3947 5 1 1.3976 2.6808 0.5918 6 1 3.4898 1.4730 0.8030 7 6 2.0045 -1.1940 -0.0005 8 1 3.0798 -1.1968 0.1007 9 6 1.2577 -2.4952 -0.1423 10 6 2.2336 -3.6631 0.0142 11 6 1.4753 -4.9842 -0.1291 12 6 0.8199 -5.0488 -1.5101 13 7 1.8530 -4.9640 -2.5453 14 6 3.1660 -5.1153 -2.2153 15 6 4.1079 -5.0382 -3.1893 16 6 3.7151 -4.7943 -4.5115 17 6 4.7548 -4.7018 -5.5985 18 1 5.7410 -4.9250 -5.1914 19 6 4.4184 -5.6928 -6.7325 20 6 4.7999 -4.9015 -8.0147 21 6 4.4015 -3.4581 -7.6175 22 7 4.7487 -3.3489 -6.1846 23 7 2.4433 -4.6512 -4.8085 24 6 1.5015 -4.7307 -3.8540 25 7 0.2349 -4.5841 -4.1731 26 6 -0.1560 -3.8809 -1.6666 27 6 0.6023 -2.5598 -1.5233 28 1 -0.4851 0.8401 0.0004 29 1 0.4887 -2.5586 0.6277 30 1 2.7002 -3.6173 0.9983 31 1 3.0025 -3.5997 -0.7558 32 1 0.7067 -5.0473 0.6411 33 1 2.1707 -5.8162 -0.0180 34 1 0.2801 -5.9901 -1.6124 35 1 3.4538 -5.2989 -1.1906 36 1 5.1530 -5.1602 -2.9461 37 1 5.0201 -6.5975 -6.6449 38 1 3.3560 -5.9364 -6.7288 39 1 4.2223 -5.2436 -8.8735 40 1 5.8695 -4.9709 -8.2128 41 1 3.3318 -3.3066 -7.7615 42 1 4.9688 -2.7336 -8.2017 43 1 4.0992 -2.7478 -5.7000 44 1 -0.0170 -4.4195 -5.0954 45 1 -0.6226 -3.9268 -2.6507 46 1 -0.9247 -3.9441 -0.8964 47 1 -0.0930 -1.7279 -1.6352 48 1 1.3710 -2.4966 -2.2935 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173339404.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:21 Heat of formation + Delta-G solvation = 56.878700 kcal Electronic energy + Delta-G solvation = -27894.312011 eV Core-core repulsion = 24369.870150 eV Total energy + Delta-G solvation = -3524.441861 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.53165 -40.05338 -38.59228 -35.84470 -35.46444 -34.10861 -31.74814 -31.28236 -31.08026 -30.63594 -29.62616 -26.83419 -25.35050 -24.00953 -23.15080 -22.67966 -22.00223 -21.45886 -20.70793 -19.09086 -18.42137 -18.04180 -17.23687 -17.01205 -16.75289 -16.54694 -16.45941 -15.54945 -15.42002 -14.89420 -14.59803 -14.51755 -14.24724 -14.20439 -13.74681 -13.51963 -13.42291 -13.23789 -12.97631 -12.93855 -12.76402 -12.67259 -12.45185 -12.27009 -12.04803 -12.04276 -11.98337 -11.67212 -11.64469 -11.37787 -11.21010 -10.86439 -10.77619 -10.59333 -10.44364 -9.90740 -9.47847 -8.51920 -8.13478 -6.22928 -0.16535 0.86727 1.35035 1.37302 1.45175 1.56558 2.39647 2.72519 3.05926 3.17210 3.39743 3.53412 3.65403 3.79133 3.84041 3.89593 3.98654 4.08042 4.22835 4.37290 4.49221 4.51805 4.54317 4.59414 4.64663 4.67824 4.75548 4.81410 4.93378 4.97351 4.98619 5.00040 5.04094 5.10944 5.12541 5.20910 5.32901 5.35560 5.36567 5.43545 5.61507 5.71284 5.80626 5.84916 5.96652 6.03894 6.10424 6.15629 6.37829 6.92085 6.96592 7.44509 7.47886 8.93672 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.013151 B = 0.004463 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.646894 B = 6272.838367 C = 7322.613155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.012 3.988 3 Si 0.943 3.057 4 H -0.283 1.283 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.531 4.531 8 H 0.053 0.947 9 C 0.045 3.955 10 C -0.111 4.111 11 C -0.127 4.127 12 C 0.153 3.847 13 N -0.483 5.483 14 C 0.193 3.807 15 C -0.308 4.308 16 C 0.237 3.763 17 C 0.121 3.879 18 H 0.128 0.872 19 C -0.128 4.128 20 C -0.117 4.117 21 C 0.040 3.960 22 N -0.672 5.672 23 N -0.584 5.584 24 C 0.533 3.467 25 N -0.789 5.789 26 C -0.145 4.145 27 C -0.071 4.071 28 H 0.257 0.743 29 H -0.002 1.002 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.208 0.792 36 H 0.186 0.814 37 H 0.098 0.902 38 H 0.056 0.944 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.028 0.972 42 H 0.087 0.913 43 H 0.332 0.668 44 H 0.337 0.663 45 H 0.103 0.897 46 H 0.056 0.944 47 H 0.023 0.977 48 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.963 -15.866 -8.925 21.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.186 4.186 3 Si 0.769 3.231 4 H -0.209 1.209 5 H -0.211 1.211 6 H -0.185 1.185 7 C -0.569 4.569 8 H 0.071 0.929 9 C 0.027 3.973 10 C -0.149 4.149 11 C -0.164 4.164 12 C 0.051 3.949 13 N -0.179 5.179 14 C 0.055 3.945 15 C -0.338 4.338 16 C 0.069 3.931 17 C 0.011 3.989 18 H 0.146 0.854 19 C -0.166 4.166 20 C -0.155 4.155 21 C -0.089 4.089 22 N -0.300 5.300 23 N -0.308 5.308 24 C 0.166 3.834 25 N -0.429 5.429 26 C -0.183 4.183 27 C -0.109 4.109 28 H 0.066 0.934 29 H 0.017 0.983 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.124 0.876 34 H 0.113 0.887 35 H 0.224 0.776 36 H 0.203 0.797 37 H 0.116 0.884 38 H 0.075 0.925 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.047 0.953 42 H 0.105 0.895 43 H 0.148 0.852 44 H 0.153 0.847 45 H 0.121 0.879 46 H 0.074 0.926 47 H 0.042 0.958 48 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges 10.928 -15.559 -9.158 21.104 hybrid contribution -0.679 1.554 -0.009 1.696 sum 10.248 -14.005 -9.167 19.627 Atomic orbital electron populations 1.70077 1.07299 1.26901 1.51576 1.25714 0.95486 1.02315 0.95133 0.85802 0.79159 0.80077 0.78081 1.20926 1.21109 1.18525 1.21618 0.93491 0.92573 1.49236 0.92866 1.18643 0.93657 0.92631 0.92418 1.21759 0.98071 0.93920 1.01125 1.22031 1.01453 0.98580 0.94344 1.21465 0.87863 0.99507 0.86106 1.44722 1.07487 1.58438 1.07251 1.23169 0.81552 0.87093 1.02670 1.21555 1.02574 1.17756 0.91866 1.22835 0.91839 0.83094 0.95333 1.21668 0.95807 0.89938 0.91507 0.85444 1.22878 1.01725 0.98567 0.93476 1.22721 1.02720 0.92958 0.97143 1.22930 0.98438 0.98828 0.88706 1.62370 1.54532 1.09364 1.03780 1.69604 1.02368 1.26121 1.32675 1.20239 0.91156 0.91064 0.80954 1.70028 1.11452 1.35504 1.25940 1.22218 0.97903 0.93832 1.04366 1.21061 0.96938 0.95346 0.97598 0.93390 0.98337 0.91713 0.92528 0.89260 0.87614 0.88735 0.77562 0.79674 0.88378 0.92547 0.89929 0.89057 0.95340 0.89467 0.85220 0.84711 0.87908 0.92561 0.95797 0.97633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.38 11.98 21.44 0.26 -55.12 16 2 C 0.01 0.68 5.25 84.65 0.44 1.13 16 3 Si 0.94 44.84 29.54 68.60 2.03 46.86 16 4 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 5 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 6 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.53 -29.20 8.49 25.60 0.22 -28.98 16 8 H 0.05 2.84 7.75 -2.91 -0.02 2.82 16 9 C 0.04 2.18 1.97 -11.54 -0.02 2.16 16 10 C -0.11 -3.89 4.52 30.59 0.14 -3.75 16 11 C -0.13 -3.33 4.89 30.60 0.15 -3.18 16 12 C 0.15 4.72 3.17 44.99 0.14 4.87 16 13 N -0.48 -14.81 2.19 -505.58 -1.11 -15.92 16 14 C 0.19 4.56 7.78 83.43 0.65 5.21 16 15 C -0.31 -6.58 9.68 22.13 0.21 -6.37 16 16 C 0.24 6.03 5.34 43.07 0.23 6.26 16 17 C 0.12 2.43 3.81 44.51 0.17 2.59 16 18 H 0.13 1.95 7.94 -2.38 -0.02 1.93 16 19 C -0.13 -2.24 6.43 31.88 0.20 -2.04 16 20 C -0.12 -1.82 7.10 32.08 0.23 -1.60 16 21 C 0.04 0.81 7.56 86.78 0.66 1.47 16 22 N -0.67 -15.74 7.37 -486.21 -3.58 -19.32 16 23 N -0.58 -18.78 9.66 -185.60 -1.79 -20.57 16 24 C 0.53 18.98 7.56 261.57 1.98 20.96 16 25 N -0.79 -30.45 10.41 -59.87 -0.62 -31.07 16 26 C -0.15 -5.88 5.02 30.59 0.15 -5.72 16 27 C -0.07 -3.50 4.85 30.59 0.15 -3.35 16 28 H 0.26 14.91 8.31 -92.70 -0.77 14.14 16 29 H 0.00 -0.09 8.12 -2.38 -0.02 -0.10 16 30 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 31 H 0.06 1.91 5.18 -2.39 -0.01 1.89 16 32 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.11 1.81 6.86 -2.39 -0.02 1.79 16 34 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.21 3.49 5.06 -2.91 -0.01 3.47 16 36 H 0.19 2.47 7.99 -2.92 -0.02 2.45 16 37 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.06 1.28 7.33 -2.39 -0.02 1.26 16 39 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 40 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.33 9.46 8.19 -89.69 -0.73 8.73 16 44 H 0.34 12.79 8.90 -92.70 -0.82 11.97 16 45 H 0.10 4.45 5.06 -2.38 -0.01 4.44 16 46 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 47 H 0.02 1.38 6.74 -2.39 -0.02 1.36 16 48 H 0.00 0.26 7.13 -2.39 -0.02 0.24 16 Total: -1.00 -70.82 359.72 0.30 -70.52 By element: Atomic # 1 Polarization: 35.54 SS G_CDS: -0.57 Total: 34.97 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: 5.70 Total: -10.35 kcal Atomic # 7 Polarization: -135.15 SS G_CDS: -6.85 Total: -142.00 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -70.82 0.30 -70.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173339404.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.398 kcal (2) G-P(sol) polarization free energy of solvation -70.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds