Wall clock time and date at job start Tue Mar 31 2020 11:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99666 * 2 1 4 4 H 1.48498 * 109.47408 * 270.00206 * 3 2 1 5 5 H 1.48501 * 109.47215 * 30.00538 * 3 2 1 6 6 H 1.48503 * 109.46699 * 150.00178 * 3 2 1 7 7 C 1.37873 * 120.00219 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00073 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99710 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46730 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.46982 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46988 * 299.99494 * 11 10 9 13 13 N 1.46498 * 109.47130 * 180.02562 * 12 11 10 14 14 C 1.36225 * 120.13289 * 300.27539 * 13 12 11 15 15 C 1.35715 * 119.25797 * 180.27236 * 14 13 12 16 16 C 1.40070 * 119.51854 * 359.72503 * 15 14 13 17 17 C 1.50703 * 119.87178 * 180.02562 * 16 15 14 18 18 H 1.08992 * 109.88289 * 357.93165 * 17 16 15 19 19 C 1.54317 * 109.88879 * 236.89470 * 17 16 15 20 20 C 1.55394 * 102.90234 * 218.41140 * 19 17 16 21 21 C 1.54904 * 101.74450 * 35.47753 * 20 19 17 22 22 N 1.47452 * 109.88750 * 118.95969 * 17 16 15 23 23 N 1.31390 * 120.25246 * 0.02562 * 16 15 14 24 24 C 1.34333 * 120.77104 * 0.02562 * 23 16 15 25 25 N 1.31445 * 119.76518 * 179.97438 * 24 23 16 26 26 C 1.53005 * 109.46555 * 60.00251 * 12 11 10 27 27 C 1.52995 * 109.47267 * 299.99578 * 26 12 11 28 28 H 0.96999 * 120.00044 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46732 * 60.01057 * 9 7 2 30 30 H 1.09000 * 109.47335 * 59.99988 * 10 9 7 31 31 H 1.09005 * 109.46911 * 299.99906 * 10 9 7 32 32 H 1.09001 * 109.47453 * 180.02562 * 11 10 9 33 33 H 1.09000 * 109.47545 * 59.99566 * 11 10 9 34 34 H 1.09000 * 109.47037 * 300.00384 * 12 11 10 35 35 H 1.08001 * 120.37684 * 359.97328 * 14 13 12 36 36 H 1.07995 * 120.24448 * 179.71013 * 15 14 13 37 37 H 1.09004 * 110.70713 * 336.69355 * 19 17 16 38 38 H 1.08998 * 110.70138 * 99.92807 * 19 17 16 39 39 H 1.09005 * 110.87231 * 277.39544 * 20 19 17 40 40 H 1.08998 * 111.02718 * 153.64008 * 20 19 17 41 41 H 1.08991 * 110.37898 * 204.19132 * 21 20 19 42 42 H 1.09006 * 110.37258 * 81.84812 * 21 20 19 43 43 H 1.00907 * 110.99762 * 356.15055 * 22 17 16 44 44 H 0.96993 * 119.99984 * 0.02562 * 25 24 23 45 45 H 1.09000 * 109.47340 * 60.00318 * 26 12 11 46 46 H 1.09005 * 109.46620 * 180.02562 * 26 12 11 47 47 H 1.09000 * 109.47545 * 300.00614 * 27 26 12 48 48 H 1.08996 * 109.47053 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4804 -4.9870 -0.0012 12 6 0.6004 -5.0685 1.2479 13 7 -0.1316 -6.3375 1.2476 14 6 -0.9790 -6.6379 0.2242 15 6 -1.6524 -7.8160 0.2447 16 6 -1.4601 -8.7023 1.3122 17 6 -2.2033 -10.0130 1.3427 18 1 -2.8662 -10.0834 0.4804 19 6 -3.0233 -10.1212 2.6455 20 6 -2.8686 -11.6190 3.0294 21 6 -1.4167 -11.9123 2.5764 22 7 -1.2449 -11.1335 1.3315 23 7 -0.6343 -8.3954 2.2869 24 6 0.0370 -7.2318 2.2781 25 7 0.8579 -6.9446 3.2637 26 6 -0.3939 -3.9055 1.2478 27 6 0.3711 -2.5805 1.2485 28 1 -0.4850 0.8400 0.0004 29 1 0.6242 -2.5567 -0.8904 30 1 2.8720 -3.6043 0.8894 31 1 2.8720 -3.6042 -0.8906 32 1 2.1887 -5.8155 -0.0007 33 1 0.8540 -5.0445 -0.8913 34 1 1.2269 -5.0109 2.1380 35 1 -1.1172 -5.9442 -0.5920 36 1 -2.3318 -8.0683 -0.5560 37 1 -2.6027 -9.4800 3.4201 38 1 -4.0691 -9.8732 2.4642 39 1 -3.5807 -12.2360 2.4813 40 1 -2.9784 -11.7605 4.1046 41 1 -1.2883 -12.9765 2.3789 42 1 -0.7079 -11.5779 3.3340 43 1 -0.2974 -10.7979 1.2426 44 1 0.9776 -7.5720 3.9937 45 1 -1.0203 -3.9631 0.3577 46 1 -1.0205 -3.9633 2.1379 47 1 0.9975 -2.5230 2.1386 48 1 -0.3373 -1.7521 1.2489 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173339406.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:25 Heat of formation + Delta-G solvation = 54.518026 kcal Electronic energy + Delta-G solvation = -26749.601826 eV Core-core repulsion = 23225.057598 eV Total energy + Delta-G solvation = -3524.544228 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.27509 -39.02420 -37.56029 -34.77782 -34.23755 -32.52866 -30.45335 -30.17823 -29.83333 -29.69849 -28.37440 -25.12417 -24.40193 -22.77419 -21.85280 -21.39151 -21.26320 -20.56348 -18.86633 -18.07322 -17.35991 -16.72340 -16.39827 -15.89648 -15.72801 -15.17633 -14.71329 -14.27227 -14.02136 -13.85680 -13.54080 -13.46800 -13.24375 -12.94181 -12.80357 -12.37014 -12.29680 -12.09948 -11.69721 -11.59195 -11.43687 -11.16301 -11.06259 -10.96181 -10.91297 -10.71808 -10.60266 -10.56045 -10.37719 -9.96851 -9.81527 -9.46701 -9.39767 -9.05606 -8.80233 -8.72673 -8.36969 -7.51552 -6.04570 -4.10367 0.71258 1.76867 2.58992 3.27335 3.34665 3.38075 3.65801 3.89148 4.12381 4.32898 4.39801 4.48535 4.55416 4.70218 4.88741 4.98444 5.16011 5.23127 5.25652 5.28093 5.29540 5.47433 5.50108 5.57392 5.62749 5.65790 5.69546 5.78335 5.87819 5.98551 5.99861 6.02677 6.15984 6.26151 6.35486 6.48689 6.52507 6.54650 6.66760 6.85008 6.94292 7.01830 7.05289 7.11923 7.36521 7.67575 7.90574 7.90988 8.05173 8.39248 8.57717 8.93372 9.54979 11.01325 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.036851 B = 0.002577 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.638824 B =10861.364017 C =10972.103837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.513 4.513 8 H 0.055 0.945 9 C 0.048 3.952 10 C -0.105 4.105 11 C -0.122 4.122 12 C 0.127 3.873 13 N -0.485 5.485 14 C 0.210 3.790 15 C -0.315 4.315 16 C 0.243 3.757 17 C 0.122 3.878 18 H 0.105 0.895 19 C -0.132 4.132 20 C -0.127 4.127 21 C 0.045 3.955 22 N -0.666 5.666 23 N -0.562 5.562 24 C 0.536 3.464 25 N -0.767 5.767 26 C -0.122 4.122 27 C -0.106 4.106 28 H 0.260 0.740 29 H 0.026 0.974 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.122 0.878 35 H 0.173 0.827 36 H 0.149 0.851 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.047 0.953 43 H 0.344 0.656 44 H 0.347 0.653 45 H 0.056 0.944 46 H 0.049 0.951 47 H 0.039 0.961 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.217 -20.234 1.200 21.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.551 4.551 8 H 0.074 0.926 9 C 0.029 3.971 10 C -0.143 4.143 11 C -0.160 4.160 12 C 0.026 3.974 13 N -0.180 5.180 14 C 0.070 3.930 15 C -0.346 4.346 16 C 0.073 3.927 17 C 0.012 3.988 18 H 0.122 0.878 19 C -0.171 4.171 20 C -0.165 4.165 21 C -0.084 4.084 22 N -0.296 5.296 23 N -0.284 5.284 24 C 0.168 3.832 25 N -0.405 5.405 26 C -0.161 4.161 27 C -0.144 4.144 28 H 0.070 0.930 29 H 0.044 0.956 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.140 0.860 35 H 0.190 0.810 36 H 0.167 0.833 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.065 0.935 43 H 0.161 0.839 44 H 0.164 0.836 45 H 0.075 0.925 46 H 0.068 0.932 47 H 0.058 0.942 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.661 -19.966 1.923 21.135 hybrid contribution 0.307 1.196 0.184 1.248 sum -6.355 -18.770 2.107 19.928 Atomic orbital electron populations 1.69849 1.05864 1.26446 1.50892 1.24960 0.94856 0.99074 0.95070 0.86628 0.79950 0.83563 0.78073 1.20732 1.21265 1.19930 1.21195 0.92964 0.90569 1.50365 0.92649 1.18690 0.92574 0.91688 0.94108 1.21607 0.98709 0.93046 1.00929 1.21968 0.98377 0.99877 0.95798 1.22017 0.94120 0.79092 1.02204 1.45036 1.36745 1.18656 1.17586 1.22449 0.85014 0.95659 0.89843 1.21086 1.11616 0.96989 1.04884 1.22339 0.88195 0.94401 0.87813 1.21436 0.93271 0.84458 0.99663 0.87764 1.22903 1.00268 0.97351 0.96529 1.22723 0.96762 0.95766 1.01224 1.22847 0.96442 0.98575 0.90542 1.62281 1.09292 1.21101 1.36891 1.69630 1.13654 1.17575 1.27570 1.20036 0.91360 0.82969 0.88852 1.69999 1.24814 1.38459 1.07235 1.22055 0.97375 0.95987 1.00644 1.21625 0.99771 0.93740 0.99298 0.93008 0.95573 0.92800 0.92682 0.92936 0.92288 0.85995 0.80969 0.83289 0.90263 0.90470 0.90663 0.90762 0.90301 0.93484 0.83861 0.83587 0.92540 0.93240 0.94189 0.88352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.44 11.32 55.43 0.63 -23.81 16 2 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 3 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.51 -13.48 8.56 -34.44 -0.29 -13.77 16 8 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 9 C 0.05 1.10 2.10 -91.77 -0.19 0.91 16 10 C -0.10 -2.04 5.14 -26.73 -0.14 -2.17 16 11 C -0.12 -1.99 5.17 -26.73 -0.14 -2.12 16 12 C 0.13 2.13 2.53 -67.93 -0.17 1.95 16 13 N -0.49 -7.28 2.62 -111.15 -0.29 -7.57 16 14 C 0.21 2.51 9.17 -16.50 -0.15 2.36 16 15 C -0.32 -3.29 9.67 -39.80 -0.38 -3.67 16 16 C 0.24 2.81 5.32 -82.09 -0.44 2.37 16 17 C 0.12 1.13 3.81 -67.87 -0.26 0.87 16 18 H 0.10 0.82 7.92 -51.93 -0.41 0.41 16 19 C -0.13 -1.14 6.45 -24.77 -0.16 -1.30 16 20 C -0.13 -0.94 7.08 -24.46 -0.17 -1.11 16 21 C 0.04 0.38 7.58 -2.30 -0.02 0.36 16 22 N -0.67 -6.41 7.37 -105.02 -0.77 -7.18 16 23 N -0.56 -7.96 9.71 -10.01 -0.10 -8.06 16 24 C 0.54 8.72 8.43 -323.05 -2.72 5.99 16 25 N -0.77 -13.47 12.62 29.72 0.37 -13.09 16 26 C -0.12 -2.20 5.18 -26.73 -0.14 -2.33 16 27 C -0.11 -2.33 4.98 -26.73 -0.13 -2.47 16 28 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 29 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.88 7.27 -51.93 -0.38 0.50 16 34 H 0.12 2.32 6.80 -51.93 -0.35 1.97 16 35 H 0.17 1.68 6.96 -52.49 -0.37 1.31 16 36 H 0.15 1.10 7.99 -52.49 -0.42 0.68 16 37 H 0.08 0.86 7.41 -51.93 -0.39 0.47 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.34 3.68 8.15 -39.29 -0.32 3.36 16 44 H 0.35 5.71 8.90 -40.82 -0.36 5.35 16 45 H 0.06 0.95 7.30 -51.93 -0.38 0.57 16 46 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.10 2.46 6.07 -51.93 -0.32 2.14 16 LS Contribution 371.33 15.07 5.60 5.60 Total: -1.00 -28.61 371.33 -13.07 -41.69 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -7.88 Total: 9.25 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -5.61 Total: -12.59 kcal Atomic # 7 Polarization: -59.56 SS G_CDS: -0.16 Total: -59.72 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -28.61 -13.07 -41.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173339406.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.204 kcal (2) G-P(sol) polarization free energy of solvation -28.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds